More than 300 homologs were found in PanDaTox collection
for query gene Bfae_07120 on replicon NC_013172
Organism: Brachybacterium faecium DSM 4810



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013172  Bfae_07120  cold-shock DNA-binding protein family  100 
 
 
67 aa  139  1.9999999999999998e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  0.976007  n/a   
 
 
-
 
NC_013174  Jden_0301  cold-shock DNA-binding domain protein  78.46 
 
 
67 aa  107  4.0000000000000004e-23  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.00253542  normal  0.0688177 
 
 
-
 
NC_013530  Xcel_0103  cold-shock DNA-binding domain protein  74.63 
 
 
67 aa  107  4.0000000000000004e-23  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0668  cold-shock DNA-binding domain protein  74.63 
 
 
67 aa  107  6e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.16024  normal 
 
 
-
 
NC_014151  Cfla_0013  cold-shock DNA-binding domain protein  73.13 
 
 
67 aa  107  6e-23  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0641  cold-shock DNA-binding domain protein  73.13 
 
 
67 aa  107  6e-23  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_0472  cold-shock DNA-binding protein family protein  73.13 
 
 
67 aa  106  9.000000000000001e-23  Arthrobacter sp. FB24  Bacteria  normal  0.16014  n/a   
 
 
-
 
NC_013521  Sked_02480  cold-shock DNA-binding protein family  71.64 
 
 
67 aa  105  2e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.181166  normal 
 
 
-
 
NC_011879  Achl_4023  cold-shock DNA-binding domain protein  70.15 
 
 
67 aa  104  4e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00477592 
 
 
-
 
NC_011886  Achl_1131  cold-shock DNA-binding domain protein  68.66 
 
 
67 aa  102  1e-21  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.294478 
 
 
-
 
NC_013441  Gbro_0521  Cold-shock protein DNA-binding protein  73.13 
 
 
79 aa  101  3e-21  Gordonia bronchialis DSM 43247  Bacteria  normal  0.49245  n/a   
 
 
-
 
NC_008541  Arth_1055  cold-shock DNA-binding protein family protein  68.66 
 
 
67 aa  102  3e-21  Arthrobacter sp. FB24  Bacteria  normal  0.481948  n/a   
 
 
-
 
NC_013521  Sked_02500  cold-shock DNA-binding protein family  72.58 
 
 
62 aa  99.8  1e-20  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.169268  normal 
 
 
-
 
NC_014151  Cfla_3141  cold-shock DNA-binding domain protein  68.75 
 
 
67 aa  98.6  2e-20  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0244532  hitchhiker  0.00153434 
 
 
-
 
NC_014165  Tbis_0073  cold-shock DNA-binding domain-containing protein  67.16 
 
 
67 aa  99  2e-20  Thermobispora bispora DSM 43833  Bacteria  normal  0.621224  normal 
 
 
-
 
NC_012803  Mlut_19390  cold-shock DNA-binding protein family  65.67 
 
 
67 aa  99.4  2e-20  Micrococcus luteus NCTC 2665  Bacteria  normal  0.704539  n/a   
 
 
-
 
NC_008726  Mvan_5398  cold-shock DNA-binding domain-containing protein  67.16 
 
 
67 aa  97.8  4e-20  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.262283  normal  0.0908383 
 
 
-
 
NC_009077  Mjls_5184  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  97.4  6e-20  Mycobacterium sp. JLS  Bacteria  normal  hitchhiker  0.00427326 
 
 
-
 
NC_009338  Mflv_1392  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  97.4  6e-20  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.124556  normal  0.329269 
 
 
-
 
NC_008146  Mmcs_4798  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  97.4  6e-20  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4884  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  97.4  6e-20  Mycobacterium sp. KMS  Bacteria  normal  0.71911  normal  0.101787 
 
 
-
 
NC_009953  Sare_0948  cold-shock DNA-binding domain-containing protein  67.16 
 
 
67 aa  96.7  1e-19  Salinispora arenicola CNS-205  Bacteria  normal  0.360484  normal  0.128926 
 
 
-
 
NC_009380  Strop_0628  cold-shock DNA-binding domain-containing protein  67.16 
 
 
67 aa  96.3  1e-19  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1466  cold-shock DNA-binding domain protein  65.67 
 
 
67 aa  95.5  2e-19  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.00122582  normal 
 
 
-
 
NC_007348  Reut_B5134  cold-shock DNA-binding protein family protein  65.67 
 
 
67 aa  95.5  2e-19  Ralstonia eutropha JMP134  Bacteria  normal  0.984065  n/a   
 
 
-
 
NC_009338  Mflv_5230  cold-shock DNA-binding domain-containing protein  67.16 
 
 
67 aa  95.9  2e-19  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.244858  normal 
 
 
-
 
NC_013235  Namu_2053  cold-shock DNA-binding domain protein  65.62 
 
 
67 aa  95.1  3e-19  Nakamurella multipartita DSM 44233  Bacteria  normal  0.203977  normal  0.0111256 
 
 
-
 
NC_013131  Caci_2129  cold-shock DNA-binding domain protein  65.67 
 
 
69 aa  94.4  4e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_01731  hypothetical protein  65.67 
 
 
68 aa  94.4  4e-19  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2965  cold-shock DNA-binding domain protein  68.75 
 
 
68 aa  94  6e-19  Stenotrophomonas maltophilia R551-3  Bacteria  normal  hitchhiker  0.0000138264 
 
 
-
 
NC_013441  Gbro_0573  Cold-shock protein DNA-binding protein  65.67 
 
 
67 aa  94  6e-19  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1750  cold-shock DNA-binding domain-containing protein  64.62 
 
 
67 aa  93.6  7e-19  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.0957427  n/a   
 
 
-
 
NC_011901  Tgr7_0507  cold-shock DNA-binding domain protein  65.62 
 
 
67 aa  94  7e-19  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.804223  n/a   
 
 
-
 
NC_010531  Pnec_1465  cold-shock DNA-binding domain protein  64.62 
 
 
67 aa  93.6  7e-19  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  decreased coverage  0.000499386  normal  0.887495 
 
 
-
 
NC_009565  TBFG_13677  cold shock protein A cspA  61.19 
 
 
67 aa  93.6  8e-19  Mycobacterium tuberculosis F11  Bacteria  normal  0.0108357  normal  0.108106 
 
 
-
 
NC_011662  Tmz1t_1251  cold-shock DNA-binding domain protein  64.62 
 
 
67 aa  93.2  1e-18  Thauera sp. MZ1T  Bacteria  normal  0.791861  n/a   
 
 
-
 
NC_007348  Reut_B5342  cold-shock DNA-binding protein family protein  64.62 
 
 
67 aa  93.2  1e-18  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1900  cold-shock DNA-binding domain protein  65.67 
 
 
67 aa  92.8  1e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.030523  normal 
 
 
-
 
NC_007952  Bxe_B2951  cold-shock DNA-binding protein family protein  63.08 
 
 
77 aa  92.8  1e-18  Burkholderia xenovorans LB400  Bacteria  normal  0.15288  normal 
 
 
-
 
NC_011901  Tgr7_0172  cold-shock DNA-binding domain protein  65.62 
 
 
67 aa  92.8  1e-18  Thioalkalivibrio sp. HL-EbGR7  Bacteria  hitchhiker  0.0000163048  n/a   
 
 
-
 
NC_007974  Rmet_5818  cold-shock DNA-binding protein family  64.62 
 
 
67 aa  93.2  1e-18  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4269  cold-shock DNA-binding protein family protein  64.18 
 
 
67 aa  92.8  1e-18  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2140  cold-shock DNA-binding protein family protein  64.62 
 
 
67 aa  92.8  2e-18  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.000000000648799  normal 
 
 
-
 
NC_010676  Bphyt_6907  cold-shock DNA-binding domain protein  63.08 
 
 
67 aa  92.4  2e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  0.240211  normal  0.394944 
 
 
-
 
NC_007614  Nmul_A2246  cold-shock DNA-binding domain-containing protein  64.62 
 
 
67 aa  91.7  3e-18  Nitrosospira multiformis ATCC 25196  Bacteria  decreased coverage  0.000000157436  n/a   
 
 
-
 
NC_009338  Mflv_5227  cold-shock DNA-binding domain-containing protein  61.19 
 
 
67 aa  91.7  3e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.54507  normal 
 
 
-
 
NC_014158  Tpau_3880  cold-shock DNA-binding domain protein  64.18 
 
 
67 aa  91.7  3e-18  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.902071  n/a   
 
 
-
 
NC_011662  Tmz1t_1374  cold-shock DNA-binding domain protein  66.15 
 
 
67 aa  91.3  4e-18  Thauera sp. MZ1T  Bacteria  normal  0.287556  n/a   
 
 
-
 
NC_010678  Rpic_3782  cold-shock DNA-binding domain protein  63.08 
 
 
67 aa  90.9  5e-18  Ralstonia pickettii 12J  Bacteria  normal  0.0399631  normal  0.208523 
 
 
-
 
NC_007947  Mfla_1188  cold-shock DNA-binding protein family protein  65.15 
 
 
68 aa  90.9  5e-18  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.00084266  normal 
 
 
-
 
NC_008726  Mvan_1040  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  90.9  5e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.366618  normal 
 
 
-
 
NC_012669  Bcav_2426  cold-shock DNA-binding domain protein  62.69 
 
 
67 aa  91.3  5e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.386206  normal  0.184038 
 
 
-
 
NC_012857  Rpic12D_3895  cold-shock DNA-binding domain protein  63.08 
 
 
67 aa  90.9  5e-18  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0273  cold-shock DNA-binding domain protein  61.19 
 
 
67 aa  90.1  8e-18  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0252  cold-shock DNA-binding protein family protein  61.19 
 
 
67 aa  90.1  8e-18  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.994476  n/a   
 
 
-
 
NC_011145  AnaeK_0262  cold-shock DNA-binding domain protein  61.19 
 
 
67 aa  90.1  8e-18  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1388  cold-shock DNA-binding protein family protein  61.19 
 
 
67 aa  90.1  9e-18  Dechloromonas aromatica RCB  Bacteria  decreased coverage  0.0000000000000202704  normal  0.239262 
 
 
-
 
NC_010623  Bphy_4995  cold-shock DNA-binding domain-containing protein  58.21 
 
 
67 aa  90.1  9e-18  Burkholderia phymatum STM815  Bacteria  normal  0.833631  normal 
 
 
-
 
NC_010551  BamMC406_0434  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  90.1  1e-17  Burkholderia ambifaria MC40-6  Bacteria  normal  0.157399  normal  0.399503 
 
 
-
 
NC_003296  RSp0002  cold shock-like transcription regulator protein  61.54 
 
 
67 aa  90.1  1e-17  Ralstonia solanacearum GMI1000  Bacteria  unclonable  0.0000000106276  normal 
 
 
-
 
NC_010084  Bmul_2894  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  89.7  1e-17  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0694911  normal  0.905374 
 
 
-
 
NC_007510  Bcep18194_A3591  cold-shock DNA-binding protein family protein  62.69 
 
 
67 aa  90.1  1e-17  Burkholderia sp. 383  Bacteria  normal  normal  0.724551 
 
 
-
 
NC_007510  Bcep18194_A5852  cold-shock DNA-binding protein family protein  63.08 
 
 
67 aa  89.7  1e-17  Burkholderia sp. 383  Bacteria  decreased coverage  0.0000000000587256  normal  0.480668 
 
 
 
NC_007614  Nmul_A0840  cold-shock DNA-binding domain-containing protein  65.08 
 
 
69 aa  89.7  1e-17  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0431891  n/a   
 
 
-
 
NC_007614  Nmul_A1291  cold-shock DNA-binding domain-containing protein  63.08 
 
 
67 aa  89.4  1e-17  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.515471  n/a   
 
 
-
 
NC_010508  Bcenmc03_0476  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  90.1  1e-17  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.528893 
 
 
-
 
NC_008060  Bcen_1909  cold-shock DNA-binding domain-containing protein  63.08 
 
 
67 aa  89.7  1e-17  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000000083542  n/a   
 
 
-
 
NC_008060  Bcen_2602  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  90.1  1e-17  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0673828  n/a   
 
 
-
 
NC_010508  Bcenmc03_2545  cold-shock DNA-binding domain-containing protein  63.08 
 
 
67 aa  89.7  1e-17  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.000000242015  decreased coverage  0.000000000715587 
 
 
-
 
NC_009664  Krad_3637  putative cold-shock DNA-binding domain protein  62.69 
 
 
67 aa  89.4  1e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0408  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  90.1  1e-17  Burkholderia ambifaria AMMD  Bacteria  normal  0.125835  n/a   
 
 
-
 
NC_010627  Bphy_7382  cold-shock DNA-binding domain-containing protein  59.7 
 
 
67 aa  89.4  1e-17  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0708981 
 
 
-
 
NC_008542  Bcen2424_0503  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  90.1  1e-17  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2520  cold-shock DNA-binding domain-containing protein  63.08 
 
 
67 aa  89.7  1e-17  Burkholderia cenocepacia HI2424  Bacteria  unclonable  0.000000000000151269  n/a   
 
 
-
 
NC_008836  BMA10229_A1750  cold-shock domain-contain protein  61.19 
 
 
67 aa  89  2e-17  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2791  cold-shock domain-contain protein  61.19 
 
 
67 aa  89  2e-17  Burkholderia mallei ATCC 23344  Bacteria  normal  0.827238  n/a   
 
 
-
 
NC_007298  Daro_3093  cold-shock DNA-binding protein family protein  63.08 
 
 
72 aa  89.4  2e-17  Dechloromonas aromatica RCB  Bacteria  normal  0.475725  normal 
 
 
-
 
NC_007298  Daro_3392  cold-shock DNA-binding protein family protein  63.08 
 
 
68 aa  89  2e-17  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6014  cold-shock DNA-binding protein family protein  58.21 
 
 
67 aa  89  2e-17  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3184  cold-shock domain-contain protein  61.19 
 
 
67 aa  89  2e-17  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3609  cold shock transcription regulator protein  61.19 
 
 
67 aa  89  2e-17  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2936  cold-shock domain-contain protein  61.19 
 
 
67 aa  89  2e-17  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3622  cold-shock domain-contain protein  61.19 
 
 
67 aa  89  2e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3605  putative cold-shock DNA-binding domain protein  62.5 
 
 
67 aa  89  2e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.439248 
 
 
-
 
NC_008146  Mmcs_2295  cold-shock DNA-binding protein family protein  62.69 
 
 
67 aa  89  2e-17  Mycobacterium sp. MCS  Bacteria  normal  0.904352  n/a   
 
 
-
 
NC_014210  Ndas_4077  cold-shock DNA-binding domain protein  59.7 
 
 
67 aa  89.4  2e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.742445 
 
 
-
 
NC_009077  Mjls_2334  cold-shock DNA-binding protein family protein  62.69 
 
 
67 aa  89  2e-17  Mycobacterium sp. JLS  Bacteria  normal  0.213577  normal  0.0207687 
 
 
-
 
NC_008705  Mkms_2342  cold-shock DNA-binding protein family protein  62.69 
 
 
67 aa  89  2e-17  Mycobacterium sp. KMS  Bacteria  normal  normal  0.432439 
 
 
-
 
NC_009074  BURPS668_3598  CspE-related protein  61.19 
 
 
67 aa  89  2e-17  Burkholderia pseudomallei 668  Bacteria  normal  0.164204  n/a   
 
 
-
 
NC_011145  AnaeK_2588  cold-shock DNA-binding domain protein  60.61 
 
 
67 aa  88.2  3e-17  Anaeromyxobacter sp. K  Bacteria  normal  0.110334  n/a   
 
 
-
 
NC_011891  A2cp1_2681  cold-shock DNA-binding domain protein  60.61 
 
 
67 aa  88.2  3e-17  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0114675  n/a   
 
 
-
 
NC_007336  Reut_C6028  cold-shock DNA-binding protein family protein  58.21 
 
 
67 aa  88.2  3e-17  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_26130  cold-shock DNA-binding protein family  64.06 
 
 
67 aa  88.6  3e-17  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5269  cold-shock DNA-binding domain-containing protein  61.19 
 
 
67 aa  88.6  3e-17  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0859722 
 
 
-
 
NC_013093  Amir_6800  cold-shock DNA-binding domain protein  63.08 
 
 
67 aa  88.2  3e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1093  cold-shock DNA-binding domain-containing protein  65.15 
 
 
72 aa  88.6  3e-17  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_1274  cold-shock DNA-binding protein family protein  60.61 
 
 
67 aa  88.2  3e-17  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1668  cold-shock DNA-binding protein family protein  61.54 
 
 
67 aa  88.6  3e-17  Chromohalobacter salexigens DSM 3043  Bacteria  decreased coverage  0.0000281076  n/a   
 
 
-
 
NC_007973  Rmet_2894  cold-shock DNA-binding protein family protein  63.08 
 
 
69 aa  88.6  3e-17  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.620309 
 
 
-
 
NC_012856  Rpic12D_2345  cold-shock DNA-binding domain protein  61.54 
 
 
67 aa  88.6  3e-17  Ralstonia pickettii 12D  Bacteria  normal  0.574294  normal  0.405321 
 
 
-
 
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