More than 300 homologs were found in PanDaTox collection
for query gene PXO_01731 on replicon NC_010717
Organism: Xanthomonas oryzae pv. oryzae PXO99A



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010717  PXO_01731  hypothetical protein  100 
 
 
68 aa  141  3e-33  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2965  cold-shock DNA-binding domain protein  97.06 
 
 
68 aa  139  1.9999999999999998e-32  Stenotrophomonas maltophilia R551-3  Bacteria  normal  hitchhiker  0.0000138264 
 
 
-
 
NC_010577  XfasM23_1465  cold-shock DNA-binding domain-containing protein  76.12 
 
 
67 aa  112  1.0000000000000001e-24  Xylella fastidiosa M23  Bacteria  normal  0.359616  n/a   
 
 
-
 
NC_010513  Xfasm12_1522  cold-shock DNA-binding domain-containing protein  76.12 
 
 
67 aa  112  1.0000000000000001e-24  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4386  cold-shock DNA-binding domain protein  77.27 
 
 
67 aa  112  2.0000000000000002e-24  Ralstonia pickettii 12D  Bacteria  normal  normal  0.490734 
 
 
-
 
NC_010678  Rpic_4276  cold-shock DNA-binding domain protein  77.27 
 
 
67 aa  112  2.0000000000000002e-24  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1668  cold-shock DNA-binding protein family protein  74.63 
 
 
67 aa  108  2.0000000000000002e-23  Chromohalobacter salexigens DSM 3043  Bacteria  decreased coverage  0.0000281076  n/a   
 
 
-
 
NC_003296  RSp1053  cold shock-like transcription regulator protein  73.44 
 
 
67 aa  107  4.0000000000000004e-23  Ralstonia solanacearum GMI1000  Bacteria  normal  0.470883  normal 
 
 
-
 
NC_012669  Bcav_0668  cold-shock DNA-binding domain protein  76.12 
 
 
67 aa  108  4.0000000000000004e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.16024  normal 
 
 
-
 
NC_007614  Nmul_A2246  cold-shock DNA-binding domain-containing protein  73.44 
 
 
67 aa  107  5e-23  Nitrosospira multiformis ATCC 25196  Bacteria  decreased coverage  0.000000157436  n/a   
 
 
-
 
NC_010681  Bphyt_2202  cold-shock DNA-binding domain protein  70.15 
 
 
67 aa  107  5e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1251  cold-shock DNA-binding domain protein  75 
 
 
67 aa  107  5e-23  Thauera sp. MZ1T  Bacteria  normal  0.791861  n/a   
 
 
-
 
NC_007951  Bxe_A2061  cold-shock DNA-binding protein family protein  70.15 
 
 
67 aa  107  5e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.131927 
 
 
-
 
NC_007298  Daro_3093  cold-shock DNA-binding protein family protein  75 
 
 
72 aa  107  6e-23  Dechloromonas aromatica RCB  Bacteria  normal  0.475725  normal 
 
 
-
 
NC_009379  Pnuc_0586  cold-shock DNA-binding domain-containing protein  73.13 
 
 
67 aa  107  6e-23  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2466  cold shock-like transcription regulator protein  73.44 
 
 
67 aa  106  1e-22  Ralstonia solanacearum GMI1000  Bacteria  normal  0.4868  normal 
 
 
-
 
NC_007298  Daro_1388  cold-shock DNA-binding protein family protein  71.64 
 
 
67 aa  106  1e-22  Dechloromonas aromatica RCB  Bacteria  decreased coverage  0.0000000000000202704  normal  0.239262 
 
 
-
 
NC_007404  Tbd_0679  cold-shock DNA-binding protein family protein  73.13 
 
 
68 aa  106  1e-22  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.233328  normal  0.774201 
 
 
-
 
NC_007404  Tbd_0855  cold-shock DNA-binding protein family protein  71.21 
 
 
68 aa  105  2e-22  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.563444  normal  0.445485 
 
 
-
 
NC_010627  Bphy_7382  cold-shock DNA-binding domain-containing protein  70.15 
 
 
67 aa  105  2e-22  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0708981 
 
 
-
 
NC_007614  Nmul_A1291  cold-shock DNA-binding domain-containing protein  71.88 
 
 
67 aa  105  2e-22  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.515471  n/a   
 
 
-
 
NC_013521  Sked_02480  cold-shock DNA-binding protein family  71.64 
 
 
67 aa  105  3e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.181166  normal 
 
 
-
 
NC_011879  Achl_4023  cold-shock DNA-binding domain protein  71.64 
 
 
67 aa  104  4e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00477592 
 
 
-
 
NC_007947  Mfla_2140  cold-shock DNA-binding protein family protein  73.44 
 
 
67 aa  104  4e-22  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.000000000648799  normal 
 
 
-
 
NC_011886  Achl_0641  cold-shock DNA-binding domain protein  71.64 
 
 
67 aa  104  4e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011662  Tmz1t_1374  cold-shock DNA-binding domain protein  73.44 
 
 
67 aa  103  5e-22  Thauera sp. MZ1T  Bacteria  normal  0.287556  n/a   
 
 
-
 
NC_013174  Jden_0301  cold-shock DNA-binding domain protein  71.21 
 
 
67 aa  103  5e-22  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.00253542  normal  0.0688177 
 
 
-
 
NC_010623  Bphy_5269  cold-shock DNA-binding domain-containing protein  68.66 
 
 
67 aa  103  6e-22  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0859722 
 
 
-
 
NC_007434  BURPS1710b_1112  cold shock transcription regulator protein  70.31 
 
 
81 aa  103  6e-22  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.00000000170415  n/a   
 
 
-
 
NC_007651  BTH_I0761  cold-shock domain-contain protein  70.31 
 
 
81 aa  103  6e-22  Burkholderia thailandensis E264  Bacteria  unclonable  0.00000000000025188  n/a   
 
 
-
 
NC_008541  Arth_0472  cold-shock DNA-binding protein family protein  70.15 
 
 
67 aa  103  8e-22  Arthrobacter sp. FB24  Bacteria  normal  0.16014  n/a   
 
 
-
 
NC_014151  Cfla_0013  cold-shock DNA-binding domain protein  70.15 
 
 
67 aa  103  9e-22  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_0958  cold shock protein  70.31 
 
 
67 aa  103  1e-21  Burkholderia pseudomallei 668  Bacteria  unclonable  0.000000000000117939  n/a   
 
 
-
 
NC_006348  BMA2279  cold-shock domain-contain protein  70.31 
 
 
67 aa  103  1e-21  Burkholderia mallei ATCC 23344  Bacteria  decreased coverage  0.000000000750079  n/a   
 
 
-
 
NC_007336  Reut_C6028  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  102  1e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2156  cold-shock domain-contain protein  70.31 
 
 
67 aa  103  1e-21  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.00000351487  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0574  cold-shock domain-contain protein  70.31 
 
 
67 aa  103  1e-21  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.000000000000358394  n/a   
 
 
-
 
NC_009076  BURPS1106A_0962  cold shock protein  70.31 
 
 
67 aa  103  1e-21  Burkholderia pseudomallei 1106a  Bacteria  decreased coverage  0.000153995  n/a   
 
 
-
 
NC_010551  BamMC406_2438  cold-shock DNA-binding domain-containing protein  70.31 
 
 
67 aa  103  1e-21  Burkholderia ambifaria MC40-6  Bacteria  unclonable  0.00000000000180609  unclonable  0.0000000000176576 
 
 
-
 
NC_007963  Csal_2503  cold-shock DNA-binding protein family protein  67.65 
 
 
68 aa  102  1e-21  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00000079429  n/a   
 
 
-
 
NC_008836  BMA10229_A1051  cold-shock domain-contain protein  70.31 
 
 
67 aa  103  1e-21  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000000000117316  n/a   
 
 
-
 
NC_010084  Bmul_0775  cold-shock DNA-binding domain-containing protein  70.31 
 
 
67 aa  103  1e-21  Burkholderia multivorans ATCC 17616  Bacteria  decreased coverage  0.0000000000150831  hitchhiker  0.000000000149768 
 
 
-
 
NC_008390  Bamb_2568  cold-shock DNA-binding domain-containing protein  70.31 
 
 
67 aa  103  1e-21  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000000063088  n/a   
 
 
-
 
NC_010622  Bphy_0567  cold-shock DNA-binding domain-containing protein  70.31 
 
 
68 aa  102  2e-21  Burkholderia phymatum STM815  Bacteria  unclonable  0.0000000000101913  hitchhiker  0.000143899 
 
 
-
 
NC_014151  Cfla_3141  cold-shock DNA-binding domain protein  68.18 
 
 
67 aa  102  2e-21  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0244532  hitchhiker  0.00153434 
 
 
-
 
NC_011886  Achl_1131  cold-shock DNA-binding domain protein  70.15 
 
 
67 aa  102  2e-21  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.294478 
 
 
-
 
NC_010623  Bphy_5169  cold-shock DNA-binding domain-containing protein  68.18 
 
 
67 aa  102  2e-21  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0507  cold-shock DNA-binding domain protein  66.67 
 
 
67 aa  102  2e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.804223  n/a   
 
 
-
 
NC_011901  Tgr7_0492  putative cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  101  3e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3392  cold-shock DNA-binding protein family protein  66.18 
 
 
68 aa  101  3e-21  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A5852  cold-shock DNA-binding protein family protein  70.31 
 
 
67 aa  101  3e-21  Burkholderia sp. 383  Bacteria  decreased coverage  0.0000000000587256  normal  0.480668 
 
 
 
NC_007952  Bxe_B2951  cold-shock DNA-binding protein family protein  65.67 
 
 
77 aa  101  3e-21  Burkholderia xenovorans LB400  Bacteria  normal  0.15288  normal 
 
 
-
 
NC_010508  Bcenmc03_2545  cold-shock DNA-binding domain-containing protein  70.31 
 
 
67 aa  101  3e-21  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.000000242015  decreased coverage  0.000000000715587 
 
 
-
 
NC_008060  Bcen_1909  cold-shock DNA-binding domain-containing protein  70.31 
 
 
67 aa  101  3e-21  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000000083542  n/a   
 
 
-
 
NC_013530  Xcel_0103  cold-shock DNA-binding domain protein  65.67 
 
 
67 aa  102  3e-21  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2520  cold-shock DNA-binding domain-containing protein  70.31 
 
 
67 aa  101  3e-21  Burkholderia cenocepacia HI2424  Bacteria  unclonable  0.000000000000151269  n/a   
 
 
-
 
NC_007336  Reut_C6014  cold-shock DNA-binding protein family protein  65.67 
 
 
67 aa  101  4e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3167  cold-shock DNA-binding domain protein  68.75 
 
 
68 aa  100  5e-21  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000000493488  hitchhiker  0.00220171 
 
 
-
 
NC_007951  Bxe_A0798  cold-shock DNA-binding protein family protein  68.75 
 
 
68 aa  100  5e-21  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.0000000000000106482  normal 
 
 
-
 
NC_010676  Bphyt_6907  cold-shock DNA-binding domain protein  65.67 
 
 
67 aa  100  5e-21  Burkholderia phytofirmans PsJN  Bacteria  normal  0.240211  normal  0.394944 
 
 
-
 
NC_008541  Arth_1055  cold-shock DNA-binding protein family protein  68.66 
 
 
67 aa  100  5e-21  Arthrobacter sp. FB24  Bacteria  normal  0.481948  n/a   
 
 
-
 
NC_007348  Reut_B5340  cold-shock DNA-binding protein family protein  68.66 
 
 
83 aa  100  6e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2345  cold-shock DNA-binding domain protein  70.31 
 
 
67 aa  100  6e-21  Ralstonia pickettii 12D  Bacteria  normal  0.574294  normal  0.405321 
 
 
-
 
NC_010682  Rpic_2735  cold-shock DNA-binding domain protein  70.31 
 
 
67 aa  100  6e-21  Ralstonia pickettii 12J  Bacteria  normal  0.723886  normal  0.792546 
 
 
-
 
NC_008825  Mpe_A2463  cold-shock DNA-binding protein family protein  67.65 
 
 
89 aa  100  7e-21  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.843644 
 
 
-
 
NC_009675  Anae109_4042  cold-shock DNA-binding domain-containing protein  64.18 
 
 
67 aa  100  8e-21  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4361  cold-shock DNA-binding domain-containing protein  68.18 
 
 
67 aa  100  9e-21  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3900  cold-shock DNA-binding domain-containing protein  68.18 
 
 
67 aa  100  9e-21  Burkholderia ambifaria AMMD  Bacteria  normal  0.878106  normal 
 
 
-
 
NC_013131  Caci_1466  cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  99.8  1e-20  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.00122582  normal 
 
 
-
 
NC_007963  Csal_0751  cold-shock DNA-binding protein family protein  70.31 
 
 
67 aa  99.8  1e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3292  cold-shock DNA-binding domain protein  65.67 
 
 
67 aa  99.4  1e-20  Anaeromyxobacter sp. K  Bacteria  hitchhiker  0.0070619  n/a   
 
 
-
 
NC_009675  Anae109_2494  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  99.8  1e-20  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.170049  decreased coverage  0.000196654 
 
 
-
 
NC_010622  Bphy_2727  cold-shock DNA-binding domain-containing protein  66.67 
 
 
67 aa  99.8  1e-20  Burkholderia phymatum STM815  Bacteria  normal  0.312449  normal 
 
 
-
 
NC_007347  Reut_A2754  cold-shock DNA-binding protein family protein  67.19 
 
 
69 aa  99  2e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5342  cold-shock DNA-binding protein family protein  65.15 
 
 
67 aa  99  2e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_02500  cold-shock DNA-binding protein family  72.58 
 
 
62 aa  99  2e-20  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.169268  normal 
 
 
-
 
NC_007951  Bxe_A0430  cold-shock DNA-binding protein family protein  64.18 
 
 
67 aa  99.4  2e-20  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0000180464  normal 
 
 
-
 
NC_007974  Rmet_5818  cold-shock DNA-binding protein family  65.15 
 
 
67 aa  99  2e-20  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3528  cold-shock DNA-binding domain protein  64.18 
 
 
67 aa  99.4  2e-20  Burkholderia phytofirmans PsJN  Bacteria  decreased coverage  0.00720053  normal  0.332876 
 
 
-
 
NC_011891  A2cp1_3366  cold-shock DNA-binding domain protein  64.18 
 
 
67 aa  99  2e-20  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5838  cold-shock DNA-binding domain-containing protein  66.67 
 
 
67 aa  98.2  3e-20  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.284132  normal 
 
 
-
 
NC_010531  Pnec_1465  cold-shock DNA-binding domain protein  65.62 
 
 
67 aa  98.6  3e-20  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  decreased coverage  0.000499386  normal  0.887495 
 
 
-
 
NC_007510  Bcep18194_A3591  cold-shock DNA-binding protein family protein  65.67 
 
 
67 aa  98.2  3e-20  Burkholderia sp. 383  Bacteria  normal  normal  0.724551 
 
 
-
 
NC_007511  Bcep18194_B1449  cold-shock DNA-binding protein family protein  66.67 
 
 
67 aa  98.2  3e-20  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_0476  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  98.2  3e-20  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.528893 
 
 
-
 
NC_009379  Pnuc_1750  cold-shock DNA-binding domain-containing protein  65.62 
 
 
67 aa  98.6  3e-20  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.0957427  n/a   
 
 
-
 
NC_007760  Adeh_0252  cold-shock DNA-binding protein family protein  64.18 
 
 
67 aa  98.2  3e-20  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.994476  n/a   
 
 
-
 
NC_011145  AnaeK_0262  cold-shock DNA-binding domain protein  64.18 
 
 
67 aa  98.2  3e-20  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0434  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  98.2  3e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  0.157399  normal  0.399503 
 
 
-
 
NC_007973  Rmet_2894  cold-shock DNA-binding protein family protein  65.62 
 
 
69 aa  98.2  3e-20  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.620309 
 
 
-
 
NC_007974  Rmet_5816  major cold shock protein  65.67 
 
 
67 aa  98.2  3e-20  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2602  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  98.2  3e-20  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0673828  n/a   
 
 
-
 
NC_008061  Bcen_3904  cold-shock DNA-binding domain-containing protein  66.67 
 
 
67 aa  98.2  3e-20  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1681  cold-shock DNA-binding domain protein  69.23 
 
 
69 aa  98.6  3e-20  Thauera sp. MZ1T  Bacteria  normal  0.248337  n/a   
 
 
-
 
NC_008390  Bamb_0408  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  98.2  3e-20  Burkholderia ambifaria AMMD  Bacteria  normal  0.125835  n/a   
 
 
-
 
NC_008542  Bcen2424_0503  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  98.2  3e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4464  cold-shock DNA-binding domain-containing protein  66.67 
 
 
67 aa  98.2  3e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0273  cold-shock DNA-binding domain protein  64.18 
 
 
67 aa  98.2  3e-20  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1188  cold-shock DNA-binding protein family protein  68.66 
 
 
68 aa  98.2  4e-20  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.00084266  normal 
 
 
-
 
NC_008392  Bamb_5798  cold-shock DNA-binding domain-containing protein  64.18 
 
 
67 aa  97.8  4e-20  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.992183 
 
 
-
 
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