More than 300 homologs were found in PanDaTox collection
for query gene BBta_0859 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  100 
 
 
234 aa  472  1e-132  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  47.73 
 
 
249 aa  208  7e-53  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  47.39 
 
 
245 aa  208  7e-53  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  44.59 
 
 
247 aa  207  1e-52  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  41.13 
 
 
248 aa  204  6e-52  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  45.65 
 
 
255 aa  202  5e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  45.45 
 
 
250 aa  201  9e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  42.27 
 
 
246 aa  191  7e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  42.73 
 
 
239 aa  190  2e-47  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  39.66 
 
 
247 aa  170  1e-41  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  38.96 
 
 
244 aa  169  4e-41  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  38.14 
 
 
244 aa  169  4e-41  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  40 
 
 
384 aa  166  2.9999999999999998e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  39.13 
 
 
384 aa  166  4e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  38.03 
 
 
247 aa  164  2.0000000000000002e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  38.26 
 
 
259 aa  162  4.0000000000000004e-39  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  35.19 
 
 
247 aa  159  5e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  36.96 
 
 
259 aa  157  1e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  36.96 
 
 
259 aa  157  1e-37  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  35.93 
 
 
244 aa  155  3e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  35.93 
 
 
244 aa  155  4e-37  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_011004  Rpal_1184  transcriptional regulator, Crp/Fnr family  34.62 
 
 
243 aa  155  5.0000000000000005e-37  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  34.35 
 
 
241 aa  155  7e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  41.84 
 
 
255 aa  154  8e-37  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3805  cyclic nucleotide-binding  34.35 
 
 
263 aa  153  2e-36  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  36.96 
 
 
259 aa  153  2e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  40.39 
 
 
249 aa  151  8.999999999999999e-36  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  40.82 
 
 
376 aa  150  1e-35  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  37.39 
 
 
246 aa  149  4e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  36.36 
 
 
254 aa  147  1.0000000000000001e-34  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  36.49 
 
 
246 aa  147  1.0000000000000001e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  37.12 
 
 
299 aa  147  2.0000000000000003e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  37.44 
 
 
298 aa  147  2.0000000000000003e-34  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  39.51 
 
 
249 aa  147  2.0000000000000003e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  39.51 
 
 
249 aa  146  2.0000000000000003e-34  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  40.1 
 
 
225 aa  147  2.0000000000000003e-34  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  36.68 
 
 
317 aa  144  1e-33  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  40.1 
 
 
236 aa  144  1e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  38.69 
 
 
246 aa  143  2e-33  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  36.21 
 
 
255 aa  142  6e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  38.27 
 
 
255 aa  140  1.9999999999999998e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  37.12 
 
 
268 aa  138  7e-32  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  35.14 
 
 
226 aa  136  2e-31  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal 
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  37 
 
 
274 aa  137  2e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  36.05 
 
 
243 aa  136  3.0000000000000003e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  30.26 
 
 
267 aa  135  4e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  38.27 
 
 
257 aa  135  8e-31  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  34.38 
 
 
243 aa  130  1.0000000000000001e-29  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  37.25 
 
 
243 aa  130  2.0000000000000002e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  38.19 
 
 
254 aa  129  4.0000000000000003e-29  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  35.96 
 
 
293 aa  128  9.000000000000001e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal 
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  38.46 
 
 
281 aa  128  1.0000000000000001e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  33.04 
 
 
307 aa  125  5e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  38.07 
 
 
263 aa  121  9e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  32.89 
 
 
281 aa  120  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  39.01 
 
 
244 aa  121  9.999999999999999e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  31.58 
 
 
242 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  37.36 
 
 
244 aa  118  7e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  35.18 
 
 
315 aa  117  1.9999999999999998e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  32.77 
 
 
243 aa  112  5e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  33.78 
 
 
243 aa  108  5e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_010511  M446_5658  cyclic nucleotide-binding protein  28.51 
 
 
245 aa  108  7.000000000000001e-23  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  32.02 
 
 
246 aa  104  1e-21  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  32.02 
 
 
246 aa  104  1e-21  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3499  CRP/FNR family transcriptional regulator  31.34 
 
 
286 aa  102  5e-21  Methylobacterium extorquens PA1  Bacteria  normal  0.519814  normal 
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  34.17 
 
 
240 aa  101  8e-21  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  27.63 
 
 
245 aa  99  6e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  26.91 
 
 
263 aa  94.7  1e-18  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  27.83 
 
 
241 aa  94.7  1e-18  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  32.12 
 
 
262 aa  94.7  1e-18  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  28.14 
 
 
250 aa  92.8  4e-18  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  29.11 
 
 
230 aa  92.4  6e-18  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  31.21 
 
 
276 aa  90.1  2e-17  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  27.11 
 
 
250 aa  89.4  5e-17  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  29.53 
 
 
250 aa  88.6  8e-17  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  29.41 
 
 
243 aa  88.6  8e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  27.49 
 
 
252 aa  84.3  0.000000000000001  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  27.49 
 
 
252 aa  84.3  0.000000000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  30.11 
 
 
256 aa  84  0.000000000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  27.78 
 
 
250 aa  82.4  0.000000000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  28.57 
 
 
257 aa  82.4  0.000000000000005  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  26.84 
 
 
242 aa  80.5  0.00000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  27.62 
 
 
252 aa  79.7  0.00000000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  27.27 
 
 
250 aa  79.7  0.00000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0447  transcriptional regulator  32.07 
 
 
262 aa  79  0.00000000000007  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00494896  normal 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  26.7 
 
 
252 aa  77.4  0.0000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  29.9 
 
 
249 aa  76.6  0.0000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  29.9 
 
 
249 aa  77  0.0000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  29.84 
 
 
249 aa  75.5  0.0000000000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  32.09 
 
 
246 aa  75.5  0.0000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  27.04 
 
 
235 aa  74.7  0.000000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  27.08 
 
 
249 aa  74.7  0.000000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  30.46 
 
 
256 aa  73.6  0.000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  27.51 
 
 
253 aa  71.2  0.00000000001  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  23.64 
 
 
242 aa  70.5  0.00000000002  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  26.4 
 
 
253 aa  70.1  0.00000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  24.77 
 
 
226 aa  67.4  0.0000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  26.49 
 
 
211 aa  67.4  0.0000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  26.37 
 
 
240 aa  66.2  0.0000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  28.76 
 
 
224 aa  65.9  0.0000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
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