More than 300 homologs were found in PanDaTox collection
for query gene Dshi_3844 on replicon NC_009956
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  100 
 
 
242 aa  499  1e-140  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  58.68 
 
 
242 aa  295  4e-79  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  57.98 
 
 
249 aa  291  8e-78  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  58.16 
 
 
249 aa  287  1e-76  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  58.16 
 
 
249 aa  287  1e-76  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  44.12 
 
 
250 aa  218  7e-56  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  45.8 
 
 
262 aa  214  7e-55  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  44.12 
 
 
257 aa  205  4e-52  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  42.44 
 
 
250 aa  204  1e-51  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  41.6 
 
 
276 aa  203  2e-51  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  43.81 
 
 
250 aa  199  3.9999999999999996e-50  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  44.98 
 
 
263 aa  197  1.0000000000000001e-49  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  44.49 
 
 
230 aa  192  3e-48  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  42.68 
 
 
256 aa  191  1e-47  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  38.75 
 
 
241 aa  189  2.9999999999999997e-47  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  42.11 
 
 
256 aa  164  1.0000000000000001e-39  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  36.41 
 
 
247 aa  127  2.0000000000000002e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  33.78 
 
 
247 aa  125  4.0000000000000003e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  33.8 
 
 
384 aa  125  8.000000000000001e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  33.48 
 
 
384 aa  122  6e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  34.8 
 
 
244 aa  117  9.999999999999999e-26  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  34.8 
 
 
244 aa  117  9.999999999999999e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  32.74 
 
 
244 aa  116  3.9999999999999997e-25  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  33.33 
 
 
376 aa  115  5e-25  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  35.03 
 
 
225 aa  115  6e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  32.23 
 
 
268 aa  115  8.999999999999998e-25  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  33.03 
 
 
249 aa  114  1.0000000000000001e-24  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  32.86 
 
 
246 aa  114  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  36.22 
 
 
257 aa  113  3e-24  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  35.75 
 
 
259 aa  112  4.0000000000000004e-24  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  32.47 
 
 
249 aa  112  8.000000000000001e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  33.33 
 
 
255 aa  111  1.0000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  35.23 
 
 
259 aa  110  2.0000000000000002e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  35.23 
 
 
259 aa  110  2.0000000000000002e-23  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  31.67 
 
 
255 aa  109  3e-23  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  35.45 
 
 
246 aa  109  4.0000000000000004e-23  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  31.19 
 
 
246 aa  108  7.000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  36.51 
 
 
307 aa  108  8.000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  33.88 
 
 
255 aa  104  1e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  30.77 
 
 
249 aa  103  2e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  29.74 
 
 
245 aa  103  2e-21  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  30.77 
 
 
249 aa  103  2e-21  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  31.39 
 
 
243 aa  103  3e-21  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  32.74 
 
 
310 aa  103  3e-21  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  33.49 
 
 
259 aa  103  3e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  32.44 
 
 
243 aa  102  7e-21  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  28.02 
 
 
248 aa  102  8e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  29.57 
 
 
254 aa  101  1e-20  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  32.72 
 
 
298 aa  100  1e-20  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  32.83 
 
 
243 aa  101  1e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  30.28 
 
 
250 aa  100  2e-20  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  31.82 
 
 
243 aa  99.8  4e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  35.53 
 
 
236 aa  99  6e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  33.33 
 
 
315 aa  98.6  8e-20  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  28.76 
 
 
246 aa  97.1  2e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  31.58 
 
 
317 aa  97.4  2e-19  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  31.58 
 
 
299 aa  97.4  2e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  28.19 
 
 
247 aa  97.4  2e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  28.76 
 
 
246 aa  97.4  2e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  31.34 
 
 
263 aa  96.3  4e-19  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  29.52 
 
 
250 aa  96.3  4e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  30.17 
 
 
281 aa  95.1  9e-19  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  28.04 
 
 
246 aa  93.6  2e-18  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  27.57 
 
 
239 aa  93.6  3e-18  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  30.13 
 
 
230 aa  92.4  6e-18  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  27.52 
 
 
252 aa  92.4  6e-18  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  30.96 
 
 
253 aa  91.3  1e-17  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  30.96 
 
 
235 aa  91.7  1e-17  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  31.53 
 
 
293 aa  91.3  1e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal 
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  25 
 
 
250 aa  89.4  4e-17  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  27.95 
 
 
255 aa  86.7  3e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  27.04 
 
 
244 aa  86.3  4e-16  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  30.4 
 
 
262 aa  85.1  9e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  32.84 
 
 
222 aa  85.1  9e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  32.39 
 
 
250 aa  84.3  0.000000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  27.62 
 
 
281 aa  84  0.000000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  25.65 
 
 
267 aa  84.3  0.000000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  31.88 
 
 
242 aa  84.3  0.000000000000002  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  28.95 
 
 
248 aa  83.6  0.000000000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  28.51 
 
 
248 aa  82.8  0.000000000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  28.51 
 
 
248 aa  82.8  0.000000000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  28.98 
 
 
249 aa  83.2  0.000000000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2547  Crp/FNR family transcriptional regulator  28.69 
 
 
246 aa  80.9  0.00000000000002  Ruegeria sp. TM1040  Bacteria  normal  0.389339  normal  0.365128 
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  26.84 
 
 
234 aa  80.5  0.00000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  28.43 
 
 
253 aa  80.9  0.00000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  28.63 
 
 
242 aa  79.3  0.00000000000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  24.63 
 
 
245 aa  79.3  0.00000000000005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  33.33 
 
 
230 aa  79  0.00000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  29.52 
 
 
248 aa  78.6  0.00000000000008  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  28.19 
 
 
252 aa  78.6  0.00000000000009  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  27.52 
 
 
248 aa  77.8  0.0000000000002  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_007802  Jann_2207  cyclic nucleotide-binding domain-containing protein  24.52 
 
 
260 aa  77  0.0000000000002  Jannaschia sp. CCS1  Bacteria  normal  0.363509  normal 
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  31.53 
 
 
238 aa  77.8  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  31.53 
 
 
238 aa  77.8  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  27.52 
 
 
251 aa  76.6  0.0000000000003  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  27.87 
 
 
244 aa  75.9  0.0000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  28.11 
 
 
239 aa  75.9  0.0000000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  29.25 
 
 
250 aa  75.9  0.0000000000006  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  31.15 
 
 
211 aa  75.5  0.0000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  27.87 
 
 
244 aa  75.9  0.0000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
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