More than 300 homologs were found in PanDaTox collection
for query gene Swit_0953 on replicon NC_009511
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  100 
 
 
254 aa  509  1e-143  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  45.96 
 
 
239 aa  213  2.9999999999999995e-54  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  43.46 
 
 
246 aa  211  7e-54  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  45.49 
 
 
244 aa  205  5e-52  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  46.08 
 
 
226 aa  187  2e-46  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  41.6 
 
 
250 aa  179  4.999999999999999e-44  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  43.69 
 
 
249 aa  176  4e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  39.22 
 
 
247 aa  172  5.999999999999999e-42  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  43.4 
 
 
243 aa  171  7.999999999999999e-42  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  38.89 
 
 
247 aa  171  1e-41  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  40.66 
 
 
245 aa  170  2e-41  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  40.91 
 
 
255 aa  169  4e-41  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  35.74 
 
 
244 aa  166  4e-40  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  35.74 
 
 
244 aa  166  4e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  36.64 
 
 
244 aa  164  1.0000000000000001e-39  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  38.72 
 
 
247 aa  164  1.0000000000000001e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  39 
 
 
384 aa  164  1.0000000000000001e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  40.3 
 
 
248 aa  162  4.0000000000000004e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  38.17 
 
 
384 aa  160  1e-38  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  38.24 
 
 
259 aa  156  3e-37  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  37.55 
 
 
246 aa  154  1e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  36.64 
 
 
246 aa  151  8e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  38.26 
 
 
259 aa  150  1e-35  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  38.36 
 
 
246 aa  150  1e-35  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  38.26 
 
 
259 aa  150  1e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  42.44 
 
 
249 aa  150  2e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  42.44 
 
 
249 aa  150  2e-35  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  38.14 
 
 
243 aa  149  5e-35  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  37.4 
 
 
255 aa  149  6e-35  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  37.76 
 
 
249 aa  149  6e-35  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  40.37 
 
 
254 aa  148  8e-35  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  38.17 
 
 
293 aa  148  1.0000000000000001e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal 
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  36.36 
 
 
234 aa  147  2.0000000000000003e-34  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  35.71 
 
 
376 aa  146  3e-34  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  34.72 
 
 
225 aa  144  1e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  39.71 
 
 
236 aa  140  9.999999999999999e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  38.2 
 
 
268 aa  141  9.999999999999999e-33  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  34.2 
 
 
307 aa  137  1e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  34.48 
 
 
259 aa  134  9.999999999999999e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  36.21 
 
 
255 aa  134  9.999999999999999e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  32.76 
 
 
243 aa  134  1.9999999999999998e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3805  cyclic nucleotide-binding  33.19 
 
 
263 aa  133  3e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  36.82 
 
 
257 aa  133  3e-30  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  40.5 
 
 
243 aa  132  5e-30  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  33.89 
 
 
315 aa  130  2.0000000000000002e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  34.22 
 
 
298 aa  130  2.0000000000000002e-29  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  38.92 
 
 
243 aa  130  2.0000000000000002e-29  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  33.77 
 
 
267 aa  129  5.0000000000000004e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  34.78 
 
 
244 aa  127  1.0000000000000001e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  35.82 
 
 
255 aa  126  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  37.11 
 
 
242 aa  126  3e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  34.35 
 
 
244 aa  126  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  31.2 
 
 
247 aa  126  4.0000000000000003e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal 
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  31.38 
 
 
241 aa  125  5e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1184  transcriptional regulator, Crp/Fnr family  31.9 
 
 
243 aa  124  1e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  33.05 
 
 
317 aa  123  3e-27  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  34.88 
 
 
246 aa  122  6e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  34.88 
 
 
246 aa  122  6e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  34.16 
 
 
299 aa  122  7e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  33.2 
 
 
281 aa  116  3e-25  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  34.54 
 
 
281 aa  115  6.9999999999999995e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  33.33 
 
 
274 aa  114  1.0000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  29.49 
 
 
252 aa  108  1e-22  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  29.49 
 
 
252 aa  108  1e-22  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  32.74 
 
 
253 aa  106  3e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  36.87 
 
 
263 aa  107  3e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  32.89 
 
 
253 aa  104  1e-21  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  32.89 
 
 
235 aa  104  1e-21  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  32.27 
 
 
243 aa  100  2e-20  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  28.93 
 
 
252 aa  98.6  8e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  35.29 
 
 
240 aa  95.9  6e-19  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  30.37 
 
 
276 aa  94.7  1e-18  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  28.45 
 
 
250 aa  93.6  3e-18  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  32.16 
 
 
257 aa  91.3  1e-17  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  28.44 
 
 
250 aa  87  2e-16  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  27.19 
 
 
245 aa  85.5  7e-16  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  33.5 
 
 
246 aa  85.1  9e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  31.09 
 
 
249 aa  83.6  0.000000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  29.91 
 
 
262 aa  84.3  0.000000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_010172  Mext_3499  CRP/FNR family transcriptional regulator  26.47 
 
 
286 aa  82  0.000000000000007  Methylobacterium extorquens PA1  Bacteria  normal  0.519814  normal 
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  25.13 
 
 
241 aa  80.1  0.00000000000004  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  30.05 
 
 
249 aa  79.3  0.00000000000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  30.05 
 
 
249 aa  79  0.00000000000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  28.8 
 
 
256 aa  77  0.0000000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_009952  Dshi_0447  transcriptional regulator  28.57 
 
 
262 aa  75.5  0.0000000000007  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00494896  normal 
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  25.48 
 
 
242 aa  73.9  0.000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2207  cyclic nucleotide-binding domain-containing protein  28.57 
 
 
260 aa  73.6  0.000000000003  Jannaschia sp. CCS1  Bacteria  normal  0.363509  normal 
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  28.77 
 
 
248 aa  73.2  0.000000000004  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  28.77 
 
 
251 aa  72.8  0.000000000005  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  28.8 
 
 
230 aa  71.6  0.00000000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  29.61 
 
 
256 aa  71.2  0.00000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  25.66 
 
 
242 aa  70.9  0.00000000002  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0270  transcriptional regulator, Crp/Fnr family  29.69 
 
 
233 aa  71.2  0.00000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.479827  n/a   
 
 
-
 
NC_011206  Lferr_0447  transcriptional regulator, Crp/Fnr family  29.69 
 
 
233 aa  71.2  0.00000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  hitchhiker  0.000251756 
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  25 
 
 
263 aa  70.5  0.00000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  24.64 
 
 
252 aa  70.1  0.00000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  30.62 
 
 
310 aa  69.3  0.00000000005  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  27.98 
 
 
229 aa  68.2  0.0000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  25.7 
 
 
250 aa  68.2  0.0000000001  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  28.71 
 
 
250 aa  68.2  0.0000000001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
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