186 homologs were found in PanDaTox collection
for query gene Pden_2108 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  100 
 
 		 243 aa  486  1e-136  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  42.86 
 
 		 246 aa  201  9.999999999999999e-51  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal  1 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  42.86 
 
 		 239 aa  198  7.999999999999999e-50  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal  1 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  47.03 
 
 		 244 aa  187  1e-46  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  43.4 
 
 		 254 aa  171  6.999999999999999e-42  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  36.97 
 
 		 247 aa  165  6.9999999999999995e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  40.54 
 
 		 250 aa  162  6e-39  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal  1 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  37.66 
 
 		 249 aa  147  1.0000000000000001e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  34.47 
 
 		 248 aa  146  3e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  41.55 
 
 		 226 aa  139  4.999999999999999e-32  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal  1 
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  34.19 
 
 		 245 aa  138  1e-31  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  34.38 
 
 		 234 aa  130  1.0000000000000001e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.0477074 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  31.62 
 
 		 244 aa  127  2.0000000000000002e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  31.62 
 
 		 244 aa  127  2.0000000000000002e-28  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal  1 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  36.21 
 
 		 384 aa  127  2.0000000000000002e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  37.08 
 
 		 254 aa  126  2.0000000000000002e-28  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  35.96 
 
 		 267 aa  124  1e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  33.33 
 
 		 247 aa  124  2e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  33.51 
 
 		 244 aa  123  3e-27  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal  1 
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  32.92 
 
 		 243 aa  122  4e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  33.48 
 
 		 259 aa  122  7e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  hitchhiker  0.00010652 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  35.74 
 
 		 255 aa  122  7e-27  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  30.6 
 
 		 247 aa  121  8e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal  1 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  32.06 
 
 		 225 aa  120  9.999999999999999e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.0893417 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  34.91 
 
 		 384 aa  121  9.999999999999999e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  32.77 
 
 		 246 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  33.47 
 
 		 255 aa  120  1.9999999999999998e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  38.92 
 
 		 293 aa  119  3.9999999999999996e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal  1 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  34.76 
 
 		 376 aa  119  4.9999999999999996e-26  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal  1 
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  35.71 
 
 		 259 aa  117  1.9999999999999998e-25  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  31.49 
 
 		 246 aa  117  1.9999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  35.56 
 
 		 259 aa  116  3e-25  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.996332 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  35.56 
 
 		 259 aa  116  3e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.161686 
 
 
-
 
NC_007958  RPD_3805  cyclic nucleotide-binding  32.02 
 
 		 263 aa  115  6e-25  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  31.56 
 
 		 274 aa  114  1.0000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  31.93 
 
 		 247 aa  113  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  29.24 
 
 		 241 aa  110  1.0000000000000001e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  33.33 
 
 		 249 aa  110  2.0000000000000002e-23  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  37.5 
 
 		 249 aa  109  3e-23  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1184  transcriptional regulator, Crp/Fnr family  28.44 
 
 		 243 aa  110  3e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  37.5 
 
 		 249 aa  110  3e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.371562 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  32.34 
 
 		 246 aa  108  6e-23  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  34.05 
 
 		 317 aa  107  1e-22  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal  1 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  34.05 
 
 		 298 aa  108  1e-22  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal  1 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  34.05 
 
 		 299 aa  107  2e-22  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  33.87 
 
 		 243 aa  106  3e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  hitchhiker  0.000118444 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  31.33 
 
 		 236 aa  103  3e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  36.23 
 
 		 263 aa  102  5e-21  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal  1 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  33.78 
 
 		 246 aa  102  6e-21  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  33.78 
 
 		 246 aa  102  8e-21  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  31.5 
 
 		 242 aa  101  1e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  34.76 
 
 		 268 aa  100  2e-20  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  29.57 
 
 		 244 aa  99  7e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  34.5 
 
 		 281 aa  98.6  8e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.999867 
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  32.46 
 
 		 257 aa  98.2  9e-20  Methylobacterium sp. 4-46  Bacteria  normal  1  decreased coverage  0.00106309 
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  33.62 
 
 		 243 aa  97.4  2e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  27.57 
 
 		 255 aa  95.1  9e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  28.7 
 
 		 244 aa  94.7  1e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  28.21 
 
 		 255 aa  94.4  1e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_010511  M446_5658  cyclic nucleotide-binding protein  29.57 
 
 		 245 aa  92.8  4e-18  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  29.47 
 
 		 307 aa  92.8  5e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  31.56 
 
 		 252 aa  92.4  6e-18  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  32.93 
 
 		 281 aa  90.9  2e-17  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  32.2 
 
 		 243 aa  88.6  7e-17  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.173486 
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  33.93 
 
 		 253 aa  84  0.000000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  28.34 
 
 		 315 aa  83.2  0.000000000000003  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  29.68 
 
 		 252 aa  82.8  0.000000000000005  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  29.68 
 
 		 252 aa  82.8  0.000000000000005  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  27.95 
 
 		 249 aa  79  0.00000000000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  45.24 
 
 		 235 aa  79  0.00000000000007  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  27.16 
 
 		 245 aa  78.6  0.00000000000008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  30.43 
 
 		 246 aa  77  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  35.47 
 
 		 243 aa  76.3  0.0000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  27.8 
 
 		 249 aa  76.3  0.0000000000005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  27.8 
 
 		 249 aa  75.5  0.0000000000006  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  44.05 
 
 		 253 aa  75.5  0.0000000000008  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  24.54 
 
 		 242 aa  73.9  0.000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  45.98 
 
 		 240 aa  68.2  0.0000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  26.79 
 
 		 250 aa  67.8  0.0000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_010172  Mext_3499  CRP/FNR family transcriptional regulator  25.58 
 
 		 286 aa  65.9  0.0000000005  Methylobacterium extorquens PA1  Bacteria  normal  0.519814  normal  1 
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  23.47 
 
 		 250 aa  62.8  0.000000005  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.0375093 
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  22.67 
 
 		 263 aa  62.4  0.000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  28.92 
 
 		 257 aa  62  0.000000008  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  27.03 
 
 		 230 aa  60.8  0.00000002  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  24.64 
 
 		 241 aa  60.8  0.00000002  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_008048  Sala_0394  cyclic nucleotide-binding protein  25.58 
 
 		 236 aa  60.5  0.00000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0638348  normal  0.718832 
 
 
-
 
NC_009952  Dshi_0447  transcriptional regulator  25.24 
 
 		 262 aa  60.5  0.00000003  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00494896  normal  1 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  24.87 
 
 		 250 aa  59.7  0.00000004  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  26.54 
 
 		 262 aa  59.7  0.00000004  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.586423 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  24.7 
 
 		 252 aa  58.9  0.00000006  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  28.4 
 
 		 256 aa  58.9  0.00000007  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  24.14 
 
 		 250 aa  58.5  0.00000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  26.32 
 
 		 276 aa  58.5  0.00000009  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  27.88 
 
 		 231 aa  58.5  0.0000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_008340  Mlg_2133  Crp/FNR family transcriptional regulator  24.59 
 
 		 256 aa  58.2  0.0000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.654857 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  26.4 
 
 		 249 aa  57.4  0.0000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  23.93 
 
 		 250 aa  57  0.0000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  25 
 
 		 262 aa  55.1  0.0000009  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  27.74 
 
 		 232 aa  55.1  0.000001  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_3034  Crp/FNR family transcriptional regulator  28.74 
 
 		 269 aa  55.1  0.000001  Pseudomonas putida W619  Bacteria  normal  0.369454  normal  1 
 
 
-
 
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