121 homologs were found in PanDaTox collection
for query gene BBta_2391 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  100 
 
 
274 aa  555  1e-157  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  38.89 
 
 
247 aa  171  1e-41  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  38.33 
 
 
249 aa  160  2e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  38.22 
 
 
250 aa  156  3e-37  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  32.77 
 
 
248 aa  154  2e-36  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  34.2 
 
 
267 aa  153  2.9999999999999998e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  38.2 
 
 
247 aa  150  2e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  37.34 
 
 
247 aa  147  2.0000000000000003e-34  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  35.96 
 
 
384 aa  146  4.0000000000000006e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  35.96 
 
 
317 aa  144  1e-33  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  35.96 
 
 
299 aa  144  1e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  35.53 
 
 
384 aa  143  2e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  35.56 
 
 
298 aa  143  3e-33  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  34.96 
 
 
255 aa  143  4e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  33.76 
 
 
244 aa  140  1.9999999999999998e-32  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  36.4 
 
 
281 aa  139  3.9999999999999997e-32  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  32.91 
 
 
246 aa  138  7.999999999999999e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  36.09 
 
 
255 aa  138  7.999999999999999e-32  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  36.71 
 
 
225 aa  138  1e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  34.04 
 
 
244 aa  137  1e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  32.91 
 
 
246 aa  137  2e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  37 
 
 
234 aa  137  2e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  34.04 
 
 
244 aa  137  2e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  34.18 
 
 
376 aa  135  5e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  34.93 
 
 
244 aa  134  9.999999999999999e-31  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  37.44 
 
 
249 aa  133  3.9999999999999996e-30  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  36.44 
 
 
249 aa  132  3.9999999999999996e-30  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  37.44 
 
 
249 aa  132  3.9999999999999996e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  36.52 
 
 
243 aa  132  6e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  33.65 
 
 
246 aa  131  1.0000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  33.04 
 
 
239 aa  131  1.0000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  33.49 
 
 
293 aa  130  2.0000000000000002e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal 
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  32.07 
 
 
245 aa  129  4.0000000000000003e-29  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  33.33 
 
 
259 aa  124  1e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  33.33 
 
 
259 aa  124  1e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  34.67 
 
 
268 aa  124  2e-27  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  33.77 
 
 
259 aa  120  1.9999999999999998e-26  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  34.78 
 
 
243 aa  118  9e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  33.33 
 
 
255 aa  118  9.999999999999999e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  30.13 
 
 
307 aa  115  7.999999999999999e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  31.56 
 
 
243 aa  114  1.0000000000000001e-24  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  32.63 
 
 
246 aa  115  1.0000000000000001e-24  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  33.33 
 
 
254 aa  114  2.0000000000000002e-24  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  33.48 
 
 
243 aa  114  2.0000000000000002e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  32.61 
 
 
243 aa  112  5e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  30.32 
 
 
259 aa  112  7.000000000000001e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  33.04 
 
 
254 aa  110  2.0000000000000002e-23  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  31.47 
 
 
255 aa  109  4.0000000000000004e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  32.16 
 
 
257 aa  109  5e-23  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  30.3 
 
 
315 aa  109  6e-23  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  32.87 
 
 
236 aa  108  7.000000000000001e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  31.3 
 
 
244 aa  106  5e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  30.9 
 
 
244 aa  103  2e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  30.87 
 
 
281 aa  103  3e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  31.58 
 
 
263 aa  102  6e-21  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  28.39 
 
 
241 aa  101  1e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  35.09 
 
 
226 aa  100  2e-20  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal 
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  26.29 
 
 
247 aa  100  3e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal 
 
 
-
 
NC_007958  RPD_3805  cyclic nucleotide-binding  25 
 
 
263 aa  96.3  5e-19  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1184  transcriptional regulator, Crp/Fnr family  27.5 
 
 
243 aa  93.2  4e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  31.28 
 
 
243 aa  92.4  7e-18  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  29.52 
 
 
252 aa  91.7  1e-17  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  29.52 
 
 
252 aa  91.7  1e-17  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  27.73 
 
 
252 aa  90.9  2e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  28.44 
 
 
245 aa  90.1  4e-17  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  28.14 
 
 
246 aa  89.7  4e-17  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  28.14 
 
 
246 aa  89.4  6e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  27.98 
 
 
250 aa  86.7  4e-16  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  26.55 
 
 
250 aa  85.9  6e-16  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  30.54 
 
 
242 aa  85.5  8e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5658  cyclic nucleotide-binding protein  27.71 
 
 
245 aa  84.7  0.000000000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  25.32 
 
 
235 aa  84.3  0.000000000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  25.41 
 
 
253 aa  83.2  0.000000000000005  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  27.78 
 
 
253 aa  82.4  0.000000000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  27.8 
 
 
240 aa  80.9  0.00000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  24.77 
 
 
263 aa  80.1  0.00000000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  32.97 
 
 
246 aa  77.4  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  28.25 
 
 
252 aa  77.8  0.0000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  27.44 
 
 
250 aa  77.8  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  30.77 
 
 
249 aa  76.3  0.0000000000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  25.81 
 
 
250 aa  70.5  0.00000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  29.94 
 
 
257 aa  70.1  0.00000000004  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0447  transcriptional regulator  27.06 
 
 
262 aa  69.3  0.00000000007  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00494896  normal 
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  25.81 
 
 
250 aa  68.9  0.00000000007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  28.95 
 
 
249 aa  66.2  0.0000000005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  25.59 
 
 
226 aa  66.2  0.0000000005  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  28.95 
 
 
249 aa  65.9  0.0000000006  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  23.3 
 
 
241 aa  65.1  0.000000001  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  31.52 
 
 
256 aa  63.5  0.000000004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  27.07 
 
 
276 aa  62  0.00000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  28.49 
 
 
242 aa  61.2  0.00000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  23.74 
 
 
230 aa  59.3  0.00000007  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3499  CRP/FNR family transcriptional regulator  27.87 
 
 
286 aa  58.9  0.00000008  Methylobacterium extorquens PA1  Bacteria  normal  0.519814  normal 
 
 
-
 
NC_007802  Jann_2207  cyclic nucleotide-binding domain-containing protein  21.94 
 
 
260 aa  57.8  0.0000002  Jannaschia sp. CCS1  Bacteria  normal  0.363509  normal 
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  24.74 
 
 
223 aa  56.2  0.0000005  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  25 
 
 
231 aa  53.5  0.000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  23 
 
 
262 aa  53.5  0.000004  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_008048  Sala_0394  cyclic nucleotide-binding protein  24.23 
 
 
236 aa  52.4  0.000009  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0638348  normal  0.718832 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  25.47 
 
 
230 aa  52  0.00001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  22.27 
 
 
256 aa  50.8  0.00002  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
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