More than 300 homologs were found in PanDaTox collection
for query gene RSP_3616 on replicon NC_007494
Organism: Rhodobacter sphaeroides 2.4.1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  100 
 
 
243 aa  487  1e-137  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  88.07 
 
 
243 aa  436  1e-121  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  68.35 
 
 
246 aa  322  2e-87  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  68.35 
 
 
246 aa  322  5e-87  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  39.66 
 
 
235 aa  166  2.9999999999999998e-40  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  40 
 
 
252 aa  165  6.9999999999999995e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  40.18 
 
 
253 aa  163  3e-39  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  43.81 
 
 
253 aa  162  6e-39  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  41.45 
 
 
384 aa  157  1e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  37.55 
 
 
246 aa  154  1e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  39.91 
 
 
376 aa  153  2e-36  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  39.58 
 
 
247 aa  152  2.9999999999999998e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  39.32 
 
 
384 aa  153  2.9999999999999998e-36  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  37.9 
 
 
252 aa  152  4e-36  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  37.9 
 
 
252 aa  152  4e-36  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  39.83 
 
 
247 aa  152  5.9999999999999996e-36  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  39.75 
 
 
243 aa  152  5.9999999999999996e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  37.55 
 
 
246 aa  151  7e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  42.44 
 
 
240 aa  151  7e-36  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  37.93 
 
 
244 aa  151  1e-35  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  40.52 
 
 
255 aa  150  2e-35  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  39.09 
 
 
244 aa  148  6e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  39.55 
 
 
243 aa  148  9e-35  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  38.98 
 
 
244 aa  147  1.0000000000000001e-34  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  33.9 
 
 
250 aa  145  6e-34  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  34.78 
 
 
250 aa  145  8.000000000000001e-34  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  37.97 
 
 
255 aa  140  1.9999999999999998e-32  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  36.6 
 
 
259 aa  140  1.9999999999999998e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  35.4 
 
 
263 aa  139  3e-32  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  39.48 
 
 
249 aa  139  3.9999999999999997e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  35.5 
 
 
248 aa  137  1e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  31.98 
 
 
241 aa  136  3.0000000000000003e-31  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  36.32 
 
 
276 aa  136  3.0000000000000003e-31  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  36.74 
 
 
225 aa  135  4e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  38.46 
 
 
254 aa  135  6.0000000000000005e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  34.35 
 
 
259 aa  135  9e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  34.35 
 
 
259 aa  135  9e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  34.63 
 
 
244 aa  134  1.9999999999999998e-30  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  37.66 
 
 
247 aa  134  1.9999999999999998e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  34.58 
 
 
298 aa  133  3e-30  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  34.63 
 
 
259 aa  132  3.9999999999999996e-30  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  37.82 
 
 
268 aa  132  5e-30  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  40.5 
 
 
254 aa  132  5e-30  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  33.62 
 
 
249 aa  132  6.999999999999999e-30  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  35.34 
 
 
250 aa  131  7.999999999999999e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  38.24 
 
 
255 aa  131  7.999999999999999e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  34.5 
 
 
255 aa  130  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  35.04 
 
 
299 aa  131  1.0000000000000001e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  34.78 
 
 
249 aa  130  2.0000000000000002e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  34.78 
 
 
249 aa  130  2.0000000000000002e-29  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  35.04 
 
 
317 aa  130  3e-29  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  35.91 
 
 
230 aa  129  6e-29  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  34.68 
 
 
262 aa  128  8.000000000000001e-29  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  33.05 
 
 
243 aa  128  9.000000000000001e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  35.8 
 
 
246 aa  126  4.0000000000000003e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  33.47 
 
 
267 aa  125  8.000000000000001e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  34.36 
 
 
257 aa  122  5e-27  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  33.78 
 
 
257 aa  120  1.9999999999999998e-26  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  33.48 
 
 
250 aa  120  1.9999999999999998e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  35.17 
 
 
236 aa  119  4.9999999999999996e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  34.78 
 
 
274 aa  118  7e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  33.18 
 
 
256 aa  117  1.9999999999999998e-25  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  35.81 
 
 
245 aa  115  6e-25  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  32.9 
 
 
250 aa  114  1.0000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  35.47 
 
 
263 aa  114  2.0000000000000002e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  30.17 
 
 
245 aa  113  2.0000000000000002e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  33.48 
 
 
281 aa  113  2.0000000000000002e-24  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  32.77 
 
 
234 aa  112  5e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  33.64 
 
 
239 aa  112  6e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  37.16 
 
 
252 aa  112  7.000000000000001e-24  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  34.93 
 
 
249 aa  112  7.000000000000001e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  34.93 
 
 
249 aa  111  9e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  31.86 
 
 
250 aa  109  3e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  32.85 
 
 
246 aa  107  1e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  32.31 
 
 
281 aa  107  2e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  30.64 
 
 
307 aa  106  3e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  29.39 
 
 
244 aa  103  3e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  29.39 
 
 
244 aa  102  6e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  32.44 
 
 
242 aa  102  7e-21  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  33.76 
 
 
249 aa  102  7e-21  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  34.3 
 
 
293 aa  101  1e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal 
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  34.02 
 
 
226 aa  98.2  9e-20  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal 
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  32.82 
 
 
315 aa  97.1  2e-19  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  33.62 
 
 
243 aa  97.4  2e-19  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  32.02 
 
 
242 aa  96.7  3e-19  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2207  cyclic nucleotide-binding domain-containing protein  27.08 
 
 
260 aa  95.1  9e-19  Jannaschia sp. CCS1  Bacteria  normal  0.363509  normal 
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  27.71 
 
 
241 aa  94.7  1e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  29.63 
 
 
242 aa  94  2e-18  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  34.18 
 
 
256 aa  92.4  5e-18  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5658  cyclic nucleotide-binding protein  29.91 
 
 
245 aa  91.7  1e-17  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0447  transcriptional regulator  30.2 
 
 
262 aa  90.5  2e-17  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00494896  normal 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  30.73 
 
 
208 aa  84  0.000000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  34.02 
 
 
230 aa  84.3  0.000000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  30.99 
 
 
220 aa  82.8  0.000000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  32.82 
 
 
229 aa  81.6  0.00000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  25 
 
 
247 aa  81.3  0.00000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal 
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  33.51 
 
 
229 aa  80.1  0.00000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3805  cyclic nucleotide-binding  25.12 
 
 
263 aa  79.7  0.00000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  30.6 
 
 
231 aa  78.6  0.00000000000008  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  32.31 
 
 
229 aa  77.8  0.0000000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
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