More than 300 homologs were found in PanDaTox collection
for query gene Dshi_0447 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_0447  transcriptional regulator  100 
 
 
262 aa  526  1e-148  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00494896  normal 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  32.69 
 
 
249 aa  101  9e-21  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  33.01 
 
 
249 aa  101  1e-20  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  33.01 
 
 
249 aa  101  1e-20  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  35.12 
 
 
244 aa  100  2e-20  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  30.81 
 
 
244 aa  98.6  9e-20  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  30.81 
 
 
244 aa  98.6  1e-19  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  34.43 
 
 
262 aa  95.1  1e-18  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  32.69 
 
 
246 aa  93.6  3e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  34.52 
 
 
247 aa  93.2  4e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  32.05 
 
 
246 aa  92.4  6e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  31.61 
 
 
384 aa  90.9  2e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  30.2 
 
 
243 aa  90.5  3e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  33.33 
 
 
247 aa  90.1  3e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  30.93 
 
 
254 aa  90.1  3e-17  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  34.04 
 
 
268 aa  89.4  5e-17  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  31.03 
 
 
384 aa  89  7e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  33.33 
 
 
257 aa  88.2  1e-16  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  28.82 
 
 
243 aa  87.4  2e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  31.36 
 
 
255 aa  87.8  2e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  30.68 
 
 
256 aa  87  2e-16  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  30.23 
 
 
255 aa  86.7  3e-16  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  33.33 
 
 
236 aa  86.3  5e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  31.31 
 
 
317 aa  86.3  5e-16  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  31.46 
 
 
299 aa  85.5  9e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  32.06 
 
 
240 aa  85.1  0.000000000000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  32.18 
 
 
307 aa  84.7  0.000000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  31.89 
 
 
252 aa  84.3  0.000000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  30.34 
 
 
281 aa  82.8  0.000000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  31.13 
 
 
298 aa  82.4  0.000000000000006  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  31.38 
 
 
315 aa  82.8  0.000000000000006  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  31.25 
 
 
259 aa  81.3  0.00000000000001  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  27.86 
 
 
243 aa  81.6  0.00000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  28.36 
 
 
246 aa  80.9  0.00000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  28.36 
 
 
246 aa  80.9  0.00000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  30.77 
 
 
246 aa  81.3  0.00000000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  28.08 
 
 
246 aa  80.5  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  27.84 
 
 
239 aa  80.5  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  31.25 
 
 
245 aa  80.1  0.00000000000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  29.9 
 
 
250 aa  80.1  0.00000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  31.82 
 
 
259 aa  79.3  0.00000000000006  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  30.29 
 
 
259 aa  79.3  0.00000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  31.64 
 
 
225 aa  79.3  0.00000000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  31.82 
 
 
259 aa  79.3  0.00000000000006  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  28.49 
 
 
376 aa  79  0.00000000000007  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  32.07 
 
 
234 aa  79  0.00000000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  30.73 
 
 
230 aa  78.6  0.0000000000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  28.96 
 
 
263 aa  78.6  0.0000000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  29.57 
 
 
243 aa  78.6  0.0000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  28.3 
 
 
226 aa  77.4  0.0000000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal 
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  31.43 
 
 
244 aa  77.8  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  27.46 
 
 
249 aa  76.6  0.0000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  26.92 
 
 
246 aa  76.6  0.0000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  31.25 
 
 
236 aa  76.3  0.0000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  28.93 
 
 
255 aa  75.9  0.0000000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  30.2 
 
 
244 aa  75.9  0.0000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  28.57 
 
 
254 aa  75.5  0.0000000000007  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  27.32 
 
 
250 aa  75.1  0.000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  26.09 
 
 
247 aa  74.3  0.000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  27.05 
 
 
252 aa  74.3  0.000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  28.5 
 
 
231 aa  73.9  0.000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  28.9 
 
 
293 aa  73.9  0.000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal 
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  28.32 
 
 
276 aa  74.7  0.000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  26.74 
 
 
241 aa  73.6  0.000000000003  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  29.02 
 
 
235 aa  72.8  0.000000000005  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  27.92 
 
 
250 aa  72.8  0.000000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  23.98 
 
 
267 aa  72.4  0.000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2207  cyclic nucleotide-binding domain-containing protein  25.95 
 
 
260 aa  71.2  0.00000000001  Jannaschia sp. CCS1  Bacteria  normal  0.363509  normal 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  27.35 
 
 
250 aa  72  0.00000000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  25.57 
 
 
248 aa  71.6  0.00000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  28.14 
 
 
244 aa  71.6  0.00000000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  29.38 
 
 
263 aa  71.2  0.00000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  32.57 
 
 
239 aa  70.1  0.00000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  32.37 
 
 
249 aa  70.1  0.00000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  25.39 
 
 
252 aa  69.7  0.00000000005  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  25.39 
 
 
252 aa  69.7  0.00000000005  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  29.05 
 
 
253 aa  69.3  0.00000000006  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  27.06 
 
 
274 aa  69.3  0.00000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  29.55 
 
 
242 aa  69.3  0.00000000007  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  31.79 
 
 
249 aa  68.6  0.00000000009  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  30.51 
 
 
239 aa  68.6  0.00000000009  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  29.94 
 
 
239 aa  68.2  0.0000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  30.51 
 
 
239 aa  68.2  0.0000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  27.51 
 
 
253 aa  68.2  0.0000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7621  transcriptional activator Crp family  29.83 
 
 
232 aa  67.4  0.0000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  27.33 
 
 
250 aa  67.8  0.0000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  30.11 
 
 
249 aa  67.8  0.0000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  27.8 
 
 
242 aa  67.8  0.0000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  26.6 
 
 
257 aa  66.6  0.0000000004  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  27.66 
 
 
208 aa  65.9  0.0000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  28.57 
 
 
237 aa  65.9  0.0000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  29.63 
 
 
253 aa  65.1  0.000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  31.98 
 
 
281 aa  64.7  0.000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  25 
 
 
242 aa  64.7  0.000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  27.14 
 
 
242 aa  64.3  0.000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  25.11 
 
 
236 aa  64.7  0.000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  24.68 
 
 
236 aa  63.2  0.000000004  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  24.37 
 
 
211 aa  62.4  0.000000007  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_007964  Nham_1258  Crp/FNR family transcriptional regulator  24.29 
 
 
241 aa  61.6  0.00000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  28.08 
 
 
226 aa  62  0.00000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
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