249 homologs were found in PanDaTox collection
for query gene Sala_0394 on replicon NC_008048
Organism: Sphingopyxis alaskensis RB2256



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008048  Sala_0394  cyclic nucleotide-binding protein  100 
 
 
236 aa  478  1e-134  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0638348  normal  0.718832 
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  32.57 
 
 
241 aa  101  8e-21  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  29.31 
 
 
230 aa  95.9  5e-19  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  29.06 
 
 
376 aa  93.6  2e-18  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  29.05 
 
 
262 aa  91.7  9e-18  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  30.21 
 
 
257 aa  91.3  1e-17  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  30.85 
 
 
244 aa  90.5  2e-17  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  30.85 
 
 
244 aa  90.5  2e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  27.59 
 
 
255 aa  89  6e-17  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  29.38 
 
 
244 aa  87.8  1e-16  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  29.31 
 
 
276 aa  87.4  2e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  27.78 
 
 
384 aa  85.5  7e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  27.01 
 
 
256 aa  85.1  8e-16  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  30.22 
 
 
250 aa  85.1  9e-16  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  28.33 
 
 
384 aa  85.1  9e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  26.55 
 
 
250 aa  84.7  0.000000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  28.83 
 
 
225 aa  84.7  0.000000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  28.08 
 
 
259 aa  83.6  0.000000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  28.08 
 
 
259 aa  83.6  0.000000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  29.41 
 
 
255 aa  83.6  0.000000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  28.9 
 
 
247 aa  82  0.000000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  26.73 
 
 
244 aa  80.5  0.00000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  28.25 
 
 
243 aa  80.9  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  27.91 
 
 
247 aa  80.1  0.00000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  26.15 
 
 
249 aa  79.7  0.00000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  30.77 
 
 
242 aa  80.1  0.00000000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  31.05 
 
 
246 aa  79  0.00000000000006  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  26.7 
 
 
246 aa  79  0.00000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  26.7 
 
 
246 aa  78.6  0.00000000000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  27.23 
 
 
259 aa  77.8  0.0000000000001  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  24.86 
 
 
250 aa  76.6  0.0000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  26.63 
 
 
247 aa  76.6  0.0000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  28.18 
 
 
249 aa  75.9  0.0000000000005  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  27.66 
 
 
250 aa  75.9  0.0000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  28.18 
 
 
249 aa  75.9  0.0000000000006  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  24.29 
 
 
250 aa  75.1  0.000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  27.37 
 
 
259 aa  74.7  0.000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  25.51 
 
 
243 aa  73.9  0.000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  27.36 
 
 
298 aa  74.3  0.000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  28.65 
 
 
243 aa  73.9  0.000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  24.59 
 
 
248 aa  73.2  0.000000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  28.57 
 
 
299 aa  72.8  0.000000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  28.57 
 
 
317 aa  72.4  0.000000000005  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  26.82 
 
 
250 aa  72.4  0.000000000006  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  25.57 
 
 
243 aa  72  0.000000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  28.82 
 
 
249 aa  71.2  0.00000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  28.82 
 
 
249 aa  71.6  0.00000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  25.29 
 
 
257 aa  70.9  0.00000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  26.54 
 
 
246 aa  69.7  0.00000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  26.24 
 
 
267 aa  69.7  0.00000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  28.92 
 
 
226 aa  70.1  0.00000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  26.09 
 
 
252 aa  69.3  0.00000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  26.54 
 
 
246 aa  69.7  0.00000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  26.67 
 
 
263 aa  69.3  0.00000000005  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  27.27 
 
 
254 aa  69.3  0.00000000005  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  28.24 
 
 
249 aa  68.6  0.00000000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  24 
 
 
252 aa  67.8  0.0000000001  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  24 
 
 
252 aa  67.8  0.0000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  27.43 
 
 
249 aa  68.2  0.0000000001  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  25.96 
 
 
252 aa  68.2  0.0000000001  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  26.04 
 
 
242 aa  67.4  0.0000000002  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  25.58 
 
 
243 aa  66.2  0.0000000004  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  27.44 
 
 
268 aa  66.2  0.0000000004  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  28.72 
 
 
262 aa  64.3  0.000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  26.49 
 
 
245 aa  64.7  0.000000001  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  26.01 
 
 
245 aa  64.7  0.000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  26.63 
 
 
255 aa  63.9  0.000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  25.14 
 
 
235 aa  63.9  0.000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  25.29 
 
 
253 aa  63.5  0.000000003  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  25.42 
 
 
253 aa  63.5  0.000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  25.14 
 
 
236 aa  63.2  0.000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  25.14 
 
 
281 aa  63.2  0.000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  27.62 
 
 
234 aa  62.8  0.000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  24.71 
 
 
263 aa  62.8  0.000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  27.81 
 
 
281 aa  62.8  0.000000005  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  23.03 
 
 
246 aa  62.4  0.000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  29.05 
 
 
238 aa  62.4  0.000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  29.05 
 
 
238 aa  62.4  0.000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  25.27 
 
 
255 aa  62.4  0.000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  25 
 
 
240 aa  62  0.000000008  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  25.56 
 
 
243 aa  61.6  0.00000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  23.68 
 
 
254 aa  61.2  0.00000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  29.19 
 
 
237 aa  61.2  0.00000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  22.16 
 
 
239 aa  61.2  0.00000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  25.86 
 
 
256 aa  60.8  0.00000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  26.44 
 
 
254 aa  60.8  0.00000002  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  24.86 
 
 
307 aa  60.1  0.00000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  25.61 
 
 
236 aa  59.7  0.00000004  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  24.43 
 
 
222 aa  59.3  0.00000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  25.97 
 
 
253 aa  58.9  0.00000007  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  25.46 
 
 
250 aa  57.8  0.0000001  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  29.38 
 
 
250 aa  57.8  0.0000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  25.46 
 
 
250 aa  57.8  0.0000001  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  24.07 
 
 
223 aa  57.8  0.0000001  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_007963  Csal_2135  Crp/FNR family transcriptional regulator  28.65 
 
 
269 aa  58.2  0.0000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0632673  n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  25.46 
 
 
250 aa  57.8  0.0000001  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  25.46 
 
 
250 aa  57.8  0.0000001  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  25.99 
 
 
250 aa  58.2  0.0000001  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  25.46 
 
 
250 aa  57.8  0.0000001  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  25.3 
 
 
236 aa  57  0.0000002  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
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