More than 300 homologs were found in PanDaTox collection
for query gene Veis_3553 on replicon NC_008786
Organism: Verminephrobacter eiseniae EF01-2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012912  Dd1591_0929  type I site-specific deoxyribonuclease, HsdR family  75.23 
 
 
990 aa  1527    Dickeya zeae Ech1591  Bacteria  normal  0.379173  n/a   
 
 
-
 
NC_007484  Noc_0448  Type I site-specific deoxyribonuclease HsdR  69.95 
 
 
872 aa  1218    Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0363122  n/a   
 
 
-
 
NC_010682  Rpic_0447  type I site-specific deoxyribonuclease, HsdR family  76.27 
 
 
989 aa  1547    Ralstonia pickettii 12J  Bacteria  normal  0.926177  hitchhiker  0.0000000581329 
 
 
-
 
NC_007947  Mfla_1215  HsdR family type I site-specific deoxyribonuclease  74.49 
 
 
990 aa  1488    Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_2381  type I restriction-modification system, R subunit  68.89 
 
 
1032 aa  1424    Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0743  type I site-specific deoxyribonuclease, HsdR family  75.03 
 
 
999 aa  1546    Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.575824  n/a   
 
 
-
 
NC_010571  Oter_1088  HsdR family type I site-specific deoxyribonuclease  64.15 
 
 
1025 aa  1315    Opitutus terrae PB90-1  Bacteria  normal  0.0870888  normal 
 
 
-
 
NC_009052  Sbal_3719  HsdR family type I site-specific deoxyribonuclease  65.39 
 
 
1023 aa  1344    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2012  type I site-specific deoxyribonuclease, HsdR family  68.89 
 
 
1032 aa  1424    Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0134  HsdR family type I site-specific deoxyribonuclease  68.98 
 
 
1015 aa  1427    Magnetococcus sp. MC-1  Bacteria  normal  normal  0.363012 
 
 
-
 
NC_011061  Paes_2398  type I site-specific deoxyribonuclease, HsdR family  70.29 
 
 
1015 aa  1475    Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.632036  n/a   
 
 
-
 
NC_008786  Veis_3553  HsdR family type I site-specific deoxyribonuclease  100 
 
 
984 aa  2038    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5242  type I site-specific deoxyribonuclease, HsdR family  36.7 
 
 
974 aa  537  1e-151  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_1841  HsdR family type I site-specific deoxyribonuclease  38.48 
 
 
953 aa  536  1e-151  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007498  Pcar_0897  HsdR-like, putative type I restriction deoxyribonuclease  38.06 
 
 
1294 aa  521  1e-146  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0185  HsdR family type I site-specific deoxyribonuclease  33.84 
 
 
929 aa  504  1e-141  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0180  HsdR family type I site-specific deoxyribonuclease  33.84 
 
 
929 aa  504  1e-141  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.634319  n/a   
 
 
-
 
NC_008255  CHU_3349  type I restriction-modification system R subunit  35.01 
 
 
963 aa  499  1e-139  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.531995  normal  0.015033 
 
 
-
 
NC_002976  SERP2474  type I restriction-modification system, R subunit  35.61 
 
 
930 aa  493  1e-137  Staphylococcus epidermidis RP62A  Bacteria  normal  0.081777  n/a   
 
 
-
 
NC_009802  CCC13826_1410  type I restriction enzyme EcoR124II R protein (R.EcoR124II)  34.26 
 
 
1031 aa  449  1e-125  Campylobacter concisus 13826  Bacteria  normal  0.643236  n/a   
 
 
-
 
NC_013522  Taci_1543  type I site-specific deoxyribonuclease, HsdR family  32.64 
 
 
1033 aa  442  9.999999999999999e-123  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_2179  HsdR family type I site-specific deoxyribonuclease  34.01 
 
 
1007 aa  440  9.999999999999999e-123  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1501  type I site-specific deoxyribonuclease, HsdR family  33.33 
 
 
1034 aa  439  1e-121  Jonesia denitrificans DSM 20603  Bacteria  normal  0.573056  normal  0.735582 
 
 
-
 
NC_008786  Veis_2424  HsdR family type I site-specific deoxyribonuclease  33.43 
 
 
1016 aa  439  1e-121  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.831432  normal 
 
 
-
 
NC_008699  Noca_1107  HsdR family type I site-specific deoxyribonuclease  32.96 
 
 
1013 aa  439  1e-121  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1853  type I restriction enzyme EcoR124II R protein  33.1 
 
 
989 aa  433  1e-120  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0502  type I site-specific deoxyribonuclease, HsdR family  32.71 
 
 
1015 aa  431  1e-119  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.840857 
 
 
-
 
NC_010513  Xfasm12_2271  type I restriction-modification system endonuclease  33.4 
 
 
1009 aa  432  1e-119  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3473  type I site-specific deoxyribonuclease, HsdR family  33.91 
 
 
1037 aa  432  1e-119  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1956  type I site-specific deoxyribonuclease, HsdR family protein  33.65 
 
 
1037 aa  431  1e-119  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.160894  n/a   
 
 
-
 
NC_009634  Mevan_0082  HsdR family type I site-specific deoxyribonuclease  33.23 
 
 
1014 aa  422  1e-116  Methanococcus vannielii SB  Archaea  normal  0.0348133  n/a   
 
 
-
 
NC_009052  Sbal_0775  HsdR family type I site-specific deoxyribonuclease  32.41 
 
 
1041 aa  408  1.0000000000000001e-112  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3053  HsdR family type I site-specific deoxyribonuclease  33.16 
 
 
1038 aa  405  1e-111  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4396  HsdR family type I site-specific deoxyribonuclease  32.69 
 
 
1038 aa  399  1e-109  Flavobacterium johnsoniae UW101  Bacteria  normal  0.806316  n/a   
 
 
-
 
NC_008532  STER_0747  type I restriction-modification system restriction subunit  29.34 
 
 
996 aa  322  1.9999999999999998e-86  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01119  type I restriction enzyme, R subunit  30.3 
 
 
1174 aa  313  1e-83  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_2726  type I site-specific deoxyribonuclease, HsdR family  31.87 
 
 
1041 aa  306  1.0000000000000001e-81  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_03160  type I site-specific deoxyribonuclease, HsdR family  31.34 
 
 
1077 aa  303  1e-80  Cryptobacterium curtum DSM 15641  Bacteria  normal  hitchhiker  0.00000000000937778 
 
 
-
 
NC_009832  Spro_4084  HsdR family type I site-specific deoxyribonuclease  31.84 
 
 
1061 aa  299  2e-79  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3674  HsdR family type I site-specific deoxyribonuclease  32.86 
 
 
1075 aa  296  1e-78  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3538  HsdR family type I site-specific deoxyribonuclease  32.75 
 
 
1082 aa  294  7e-78  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0228194  n/a   
 
 
-
 
NC_008573  Shewana3_4164  HsdR family type I site-specific deoxyribonuclease  31.22 
 
 
1076 aa  293  8e-78  Shewanella sp. ANA-3  Bacteria  normal  normal  0.0160364 
 
 
-
 
NC_011830  Dhaf_3955  type I site-specific deoxyribonuclease, HsdR family  32.9 
 
 
1042 aa  291  3e-77  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009036  Sbal_4384  HsdR family type I site-specific deoxyribonuclease  32.72 
 
 
1061 aa  291  4e-77  Shewanella baltica OS155  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1962  type I site-specific restriction-modification system R subunit  29.7 
 
 
1095 aa  278  4e-73  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3666  Type I site-specific deoxyribonuclease  32.59 
 
 
881 aa  275  4.0000000000000004e-72  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.616224  n/a   
 
 
-
 
NC_010655  Amuc_1913  type I site-specific deoxyribonuclease, HsdR family  36.91 
 
 
1039 aa  218  4e-55  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal  0.0328667 
 
 
-
 
NC_007484  Noc_0447  type I restriction-modification system endonuclease  60.12 
 
 
163 aa  208  4e-52  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00337855  n/a   
 
 
-
 
NC_008309  HS_0559  type I site-specific deoxyribonuclease, restriction subunit  33.19 
 
 
1066 aa  201  7.999999999999999e-50  Haemophilus somnus 129PT  Bacteria  normal  0.193671  n/a   
 
 
-
 
NC_009135  MmarC5_0616  HsdR family type I site-specific deoxyribonuclease  28.82 
 
 
1024 aa  192  2e-47  Methanococcus maripaludis C5  Archaea  normal  0.945786  n/a   
 
 
-
 
NC_008599  CFF8240_0985  type I site-specific deoxyribonuclease HsdR  25.16 
 
 
1023 aa  166  2.0000000000000002e-39  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.271239  n/a   
 
 
-
 
NC_007575  Suden_0948  Type I site-specific deoxyribonuclease HsdR  26.38 
 
 
1030 aa  162  4e-38  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.000221808  n/a   
 
 
-
 
NC_010581  Bind_2674  HsdR family type I site-specific deoxyribonuclease  24.26 
 
 
1027 aa  155  2.9999999999999998e-36  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0402  HsdR family type I site-specific deoxyribonuclease  26.11 
 
 
1055 aa  152  3e-35  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0861  type I site-specific deoxyribonuclease, HsdR family  25.84 
 
 
1031 aa  151  5e-35  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0366  type I restriction-modification system, R subunit  26.23 
 
 
1039 aa  147  1e-33  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3081  type I site-specific deoxyribonuclease, HsdR family  24.15 
 
 
1027 aa  146  2e-33  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4621  type I site-specific deoxyribonuclease, HsdR family  25.34 
 
 
1028 aa  145  3e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.250071 
 
 
-
 
NC_012918  GM21_0430  type I site-specific deoxyribonuclease, HsdR family  25.42 
 
 
1030 aa  145  3e-33  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_4202  type I site-specific deoxyribonuclease, HsdR family  25.55 
 
 
1034 aa  145  5e-33  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1156  Type I site-specific deoxyribonuclease HsdR  24.64 
 
 
974 aa  144  8e-33  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159677  normal 
 
 
-
 
NC_013161  Cyan8802_2281  type I site-specific deoxyribonuclease, HsdR family  23.63 
 
 
986 aa  140  7.999999999999999e-32  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.000865916 
 
 
-
 
NC_011901  Tgr7_1775  type I restriction-modification system restriction subunit  23.55 
 
 
1041 aa  140  2e-31  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2218  type I site-specific deoxyribonuclease, HsdR family  23.63 
 
 
975 aa  140  2e-31  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009524  PsycPRwf_1115  HsdR family type I site-specific deoxyribonuclease  25.77 
 
 
1107 aa  140  2e-31  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0245  HsdR family type I site-specific deoxyribonuclease  25.08 
 
 
1038 aa  139  3.0000000000000003e-31  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1944  HsdR family type I site-specific deoxyribonuclease  24.37 
 
 
1034 aa  138  4e-31  Polaromonas sp. JS666  Bacteria  normal  normal  0.31477 
 
 
-
 
NC_009975  MmarC6_0040  HsdR family type I site-specific deoxyribonuclease  27.01 
 
 
1032 aa  137  9e-31  Methanococcus maripaludis C6  Archaea  normal  0.126055  n/a   
 
 
-
 
NC_008009  Acid345_3755  HsdR family type I site-specific deoxyribonuclease  25.64 
 
 
1029 aa  136  1.9999999999999998e-30  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0174443  normal 
 
 
-
 
NC_009513  Lreu_0874  HsdR family type I site-specific deoxyribonuclease  25.3 
 
 
1041 aa  136  1.9999999999999998e-30  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0017  HsdR family type I site-specific deoxyribonuclease  26.12 
 
 
1032 aa  135  5e-30  Methanococcus maripaludis C7  Archaea  normal  0.13213  hitchhiker  0.00259353 
 
 
-
 
NC_008761  Pnap_4782  HsdR family type I site-specific deoxyribonuclease  24.36 
 
 
1029 aa  134  7.999999999999999e-30  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2197  HsdR family type I site-specific deoxyribonuclease  24.4 
 
 
1063 aa  133  2.0000000000000002e-29  Shewanella baltica OS185  Bacteria  normal  0.511328  n/a   
 
 
-
 
NC_009438  Sputcn32_0157  HsdR family type I site-specific deoxyribonuclease  25.11 
 
 
1096 aa  132  3e-29  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_2781  HsdR family type I site-specific deoxyribonuclease  24.76 
 
 
1042 aa  132  4.0000000000000003e-29  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.759966 
 
 
-
 
NC_007969  Pcryo_0948  HsdR family type I site-specific deoxyribonuclease  23.82 
 
 
1054 aa  132  4.0000000000000003e-29  Psychrobacter cryohalolentis K5  Bacteria  normal  unclonable  0.0000568458 
 
 
-
 
NC_009523  RoseRS_2687  HsdR family type I site-specific deoxyribonuclease  25.82 
 
 
979 aa  130  9.000000000000001e-29  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_17680  type I site-specific deoxyribonuclease, HsdR family  23.82 
 
 
1035 aa  129  3e-28  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I2740  type I restriction-modification system endonuclease  24.57 
 
 
1051 aa  127  8.000000000000001e-28  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1893  type I restriction-modification system, R subunit  22.88 
 
 
1069 aa  127  1e-27  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1089  type I restriction-modification enzyme, R subunit, putative  24.4 
 
 
1040 aa  127  1e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.340753  n/a   
 
 
-
 
NC_013595  Sros_7554  HsdR family type I site-specific deoxyribonuclease  26.41 
 
 
1072 aa  127  1e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3013  HsdR family type I site-specific deoxyribonuclease  25.26 
 
 
1070 aa  126  2e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.36517  normal 
 
 
-
 
NC_007498  Pcar_2923  R (restriction) subunit/helicase  25.04 
 
 
984 aa  125  3e-27  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3424  HsdR family type I site-specific deoxyribonuclease  25.04 
 
 
984 aa  125  4e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0986  HsdR family type I site-specific deoxyribonuclease  24.46 
 
 
1040 aa  125  4e-27  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2251  type I site-specific deoxyribonuclease, HsdR family  25.32 
 
 
1044 aa  124  7e-27  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009939  Dgeo_3110  HsdR family type I site-specific deoxyribonuclease  27.35 
 
 
980 aa  122  3e-26  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_010831  Cphamn1_2543  type I site-specific deoxyribonuclease, HsdR family  23.22 
 
 
1070 aa  122  3e-26  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.111804  normal 
 
 
-
 
NC_007908  Rfer_0028  HsdR family type I site-specific deoxyribonuclease  24.46 
 
 
1046 aa  122  3.9999999999999996e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.77996  n/a   
 
 
-
 
NC_008726  Mvan_0037  HsdR family type I site-specific deoxyribonuclease  24.56 
 
 
1061 aa  121  6e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_2507  HsdR family type I site-specific deoxyribonuclease  24.57 
 
 
1068 aa  120  9.999999999999999e-26  Thermobispora bispora DSM 43833  Bacteria  normal  0.351896  normal  0.319546 
 
 
-
 
NC_007955  Mbur_1213  HsdR family type I site-specific deoxyribonuclease  23.48 
 
 
1074 aa  120  9.999999999999999e-26  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_014148  Plim_1217  type I site-specific deoxyribonuclease, HsdR family  23.31 
 
 
1065 aa  119  1.9999999999999998e-25  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1093  type I site-specific deoxyribonuclease, HsdR family  23.71 
 
 
1074 aa  119  1.9999999999999998e-25  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009052  Sbal_4345  HsdR family type I site-specific deoxyribonuclease  23.29 
 
 
920 aa  120  1.9999999999999998e-25  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3131  HsdR family type I site-specific deoxyribonuclease  25.29 
 
 
1060 aa  119  1.9999999999999998e-25  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.789076  normal  0.0879634 
 
 
-
 
NC_011206  Lferr_0969  type I site-specific deoxyribonuclease, HsdR family  28.12 
 
 
973 aa  119  3e-25  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.301095 
 
 
-
 
NC_011761  AFE_0841  type I restriction-modification system, R subunit  28.12 
 
 
973 aa  119  3e-25  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1670  HsdR family type I site-specific deoxyribonuclease  23.96 
 
 
965 aa  119  3.9999999999999997e-25  Moorella thermoacetica ATCC 39073  Bacteria  normal  decreased coverage  0.0000414451 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>