Gene Shewana3_4164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_4164 
Symbol 
ID4475905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008573 
Strand
Start bp27306 
End bp30536 
Gene Length3231 bp 
Protein Length1076 aa 
Translation table11 
GC content43% 
IMG OID639720522 
ProductHsdR family type I site-specific deoxyribonuclease 
Protein accessionYP_863680 
Protein GI117676104 
COG category[V] Defense mechanisms 
COG ID[COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 
TIGRFAM ID[TIGR00348] type I site-specific deoxyribonuclease, HsdR family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0160364 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACCT TTAAAACCGA AGCTCAATTT GAGCAGGCCT TTATCGAGGT GCTTACCCAT 
AAAGGCTGGG AGCCTGAGAT ACTTAAAAAC AAAACCGAAG CGGATTTACT GCAAAACTGG
GCGAACATTT TATTTGAGAA CAATCGTCAG CAAGATCGCT TAAACGATGT GCCACTGACG
GCAACGGAAA TGCAGCAGAT TATTGAGCAG ATCAAAGAGC TAAAAACACC GCTTAAACTC
AATGGGTTAA TTAACGGCAA AACGGTAGCC ATTAAGCGCG ATAACCCCGC CGATGCCTTG
CATCTTGGCA AAGAAGTCAG CCTAAAAATC TATGATCGCC AAGAAATTGC TGCCGGTCAA
AGCCGTTACC AAATCGTCCA GCAGCCGAAA TTTGAACGCG GCAGCCCACT GCGTAATGAC
AGGCGTGGTG ATGTGTTGTT ACTGATTAAC GGTATGCCGG TCATTCATGT TGAACTTAAA
CGCAGTGGCG TGCCAGTTAG CCAAGCGGTT AACCAAATCG AAAAGTATTC CAAAGAAGGT
ATTTTTAGTG GGCTGTTTTC ACTCATTCAA GTGTTTGTCG CCATGGAGCC TAATGAGGCC
AAATACTTTG CTAACCCAGG GCTAGATGGC AAGTTTAATC CAGATTACCA ATTCAATTGG
GCCGATTTTA ACAACGAGCC CATGAACCAT TGGAAAGATA TTGCCTCGAC ACTGTTATCC
ATTCCCATGG CGCACCAGTT GATAGGCTTT TACACCGTTG CCGATGATAC CGATGGTGTG
CTTAAAGTGA TGCGTAGTTA TCAGTATTAC GCCGCCAATG CGATATCGGA TAAGGTAGCC
AAAACCAACT GGCAACAATT GGGTAGCGCT GCTAATAACC CAGACCGCTT GGGCGGCTAT
GTGTGGCATA CCACAGGTTC AGGCAAAACC ATGACCAGCT TTAAATCAGC ACAGCTCATT
GCCCAATCAA AAGATGCCGA TAAAGTCATT TTTTTGATGG ATCGCATCGA GTTGGGCACC
CAGTCGCTGG CGGAATACCG TAATTTTGCA GGCGATGGTG AAGATGTACA AGCGACCGAA
AATACTCATG TATTGGTAAC TAAGCTAAAA AGCACGTCCC CAGCCGATAC TCTAATTGTT
AGCTCTATTC AAAAAATGAG TAATATTTTT GAAGAAGTGG ATGATGAAGG CACTGCAACA
AACTCGGCAG ATATTGAAAA AATCCGCGCT AAACGCTTGG TATTTATTAT TGACGAGGCG
CACCGTTCAA CGTTTGGCGA CATGCTGATC ATTATTAAAC GCACCTTTCC CCGCGCCTTG
TTTTTTGGTT TTACTGGCAC TCCGATCCAA GAAGAAAATG AAAAAAACGG CAATACTACC
AGTACCGTAT TTGGCAATGA GTTGCACCGC TACAGCATAG CCGATGGTAT TCGCGATGGT
AACGTACTCG GCTTTGATCC CTATAAAGTG CCTACTTTTA GGGACGGTGA CTTAAGGCAG
GCTGTCGCCC TAGAGCAAGC TAAGTCGGGA TCTGTAGCGG AAGCAATGGA TAATCCTGCC
AAAAAGAAAA AATTTAATTA TTTTATGAAT GAAGTGCCTA TGGCTGGCTA CAAAGACTCT
ACAGGTAAAT ACCACAAAGG TATTGAAGAT TACGTACCTA AAAGTCAGTA CCTAAGCGAG
ACTCACCAAG CCAAAGTGGT AGAAGATATT CTGCACAAAT GGGATGTGCT AAGCCAAGGC
AATAAGTTTC ATGCGATTTT GGCTACTAAC AGTATTGCTG AAGCCATTGA TTATTACCGT
CTGCTAAAGG CTGCTAAGCC TGATTTAAAA GTATCAGCAC TGTTTGATCC TAACATTGAT
AATGACGGCA GTGGTGACCG AGGGCCAACA TTTAAAGGTG ATGGCTTGGA TGAGATTATG
CGTGATTATA ATGCGCGTTA TGGCCACGAT TTTGATTTTG CCCGCCATGC AGCATTTAAG
AAAGATCTAG CCGCACGCCT TGCTCACAAA AAACCTTATG AGCGTATTCA TACCGATCCT
ACAAAACAGT TGGATTTATT GATTGTTGTA GACCAAATGC TCACCGGTTT TGACTCCAAG
TGGCTGAATG TCTTGTATTT AGATAAGGTA ATTAAATACC AAAACATCAT CCAAGCCTTC
TCTCGTACCA ATCGATTGTT TGGCCCCGAT AAGCCTCATG GTGTTATCCG TTACTATCGT
TACCCGCATA CGATGGAGCA ACATATTAAC GATGCGGTAA AACTATACTC TGGCGACAGA
CCCATTGGGT TATTTGTTGA TAGGCTAGAA AGTAACTTAG AAGCAATGAA TGAACTGTTC
GGTGATATTA CCGAGTTGTT CATTAGTGCC GGTGTGACAA ATTTTGAAAA ACTGCCAGAA
GATGTTGAGG CGTGCGCAAA GTTTGCTGAA CTATTTAAAG TATTTAACCA GCATCTAGAA
GCCGCGAAGA TACAAGGTTT ACATTGGGAG CAGTCGGTTT ATACATTCAC GACGAACGCT
TCAACAGGCG AAAATGGCAC TGAACATGAG GTTACTCTCG CCATTAATGA ACAAACCTAC
CTGAGCCTTG CGCTGCGTTA TAAAGAGCTC GCATCAAAAG GTGATGGTGG TGGTGCGGGT
GGCGGAGGTG TGCCTTTTGA TATTAGTGGC TATTTGACGG AAATCGACAC AGGAAAGATT
GATGCCGACT ATATGAATAG TCGCTTCGAT AAATATTTAA AAGAGCTAAA TCAGCATAAT
GATCAAGCCA GCATTCAACT TACGCTTAAC GAACTGCACA AGTCATTTTC TTCACTGACG
CAAGCTGAAC AAAAATACGC CAAGCTTTTC TTACATGATT TACAGCGTGG CGATGCAAAG
TTAATAGAAG GCCATACTTT CAGAGATTAC ATCAACACCT ACAAAGACAA TGCTGAAAAC
GCCCAGATTA ATGCCATTGT TAATGCGTTA GGTTTAGATA AAAGCCAGCT TATTAGCTTA
TTAAACGATA GTGTCAATGA GAAACACCTT AATAATTTCG GTCGCTTTGA TGCGCTTAAA
GACACTGTTG ATAAGGCAAA AGCCAAAGTT TATTTTGAAA AATTAGATGG CGTAACCATT
CCACCTTTTA AGCTCAATAT CCGAATCGAT CAGTTTCTAA AACAGTTTAT TTTTGCTCAG
GCAGATGATC TTTTAAATGA AATTTATGAA GATGTTACTG AGATGATTTA A
 
Protein sequence
MTTFKTEAQF EQAFIEVLTH KGWEPEILKN KTEADLLQNW ANILFENNRQ QDRLNDVPLT 
ATEMQQIIEQ IKELKTPLKL NGLINGKTVA IKRDNPADAL HLGKEVSLKI YDRQEIAAGQ
SRYQIVQQPK FERGSPLRND RRGDVLLLIN GMPVIHVELK RSGVPVSQAV NQIEKYSKEG
IFSGLFSLIQ VFVAMEPNEA KYFANPGLDG KFNPDYQFNW ADFNNEPMNH WKDIASTLLS
IPMAHQLIGF YTVADDTDGV LKVMRSYQYY AANAISDKVA KTNWQQLGSA ANNPDRLGGY
VWHTTGSGKT MTSFKSAQLI AQSKDADKVI FLMDRIELGT QSLAEYRNFA GDGEDVQATE
NTHVLVTKLK STSPADTLIV SSIQKMSNIF EEVDDEGTAT NSADIEKIRA KRLVFIIDEA
HRSTFGDMLI IIKRTFPRAL FFGFTGTPIQ EENEKNGNTT STVFGNELHR YSIADGIRDG
NVLGFDPYKV PTFRDGDLRQ AVALEQAKSG SVAEAMDNPA KKKKFNYFMN EVPMAGYKDS
TGKYHKGIED YVPKSQYLSE THQAKVVEDI LHKWDVLSQG NKFHAILATN SIAEAIDYYR
LLKAAKPDLK VSALFDPNID NDGSGDRGPT FKGDGLDEIM RDYNARYGHD FDFARHAAFK
KDLAARLAHK KPYERIHTDP TKQLDLLIVV DQMLTGFDSK WLNVLYLDKV IKYQNIIQAF
SRTNRLFGPD KPHGVIRYYR YPHTMEQHIN DAVKLYSGDR PIGLFVDRLE SNLEAMNELF
GDITELFISA GVTNFEKLPE DVEACAKFAE LFKVFNQHLE AAKIQGLHWE QSVYTFTTNA
STGENGTEHE VTLAINEQTY LSLALRYKEL ASKGDGGGAG GGGVPFDISG YLTEIDTGKI
DADYMNSRFD KYLKELNQHN DQASIQLTLN ELHKSFSSLT QAEQKYAKLF LHDLQRGDAK
LIEGHTFRDY INTYKDNAEN AQINAIVNAL GLDKSQLISL LNDSVNEKHL NNFGRFDALK
DTVDKAKAKV YFEKLDGVTI PPFKLNIRID QFLKQFIFAQ ADDLLNEIYE DVTEMI