Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_4164 |
Symbol | |
ID | 4475905 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008573 |
Strand | + |
Start bp | 27306 |
End bp | 30536 |
Gene Length | 3231 bp |
Protein Length | 1076 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 639720522 |
Product | HsdR family type I site-specific deoxyribonuclease |
Protein accession | YP_863680 |
Protein GI | 117676104 |
COG category | [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0160364 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACCT TTAAAACCGA AGCTCAATTT GAGCAGGCCT TTATCGAGGT GCTTACCCAT AAAGGCTGGG AGCCTGAGAT ACTTAAAAAC AAAACCGAAG CGGATTTACT GCAAAACTGG GCGAACATTT TATTTGAGAA CAATCGTCAG CAAGATCGCT TAAACGATGT GCCACTGACG GCAACGGAAA TGCAGCAGAT TATTGAGCAG ATCAAAGAGC TAAAAACACC GCTTAAACTC AATGGGTTAA TTAACGGCAA AACGGTAGCC ATTAAGCGCG ATAACCCCGC CGATGCCTTG CATCTTGGCA AAGAAGTCAG CCTAAAAATC TATGATCGCC AAGAAATTGC TGCCGGTCAA AGCCGTTACC AAATCGTCCA GCAGCCGAAA TTTGAACGCG GCAGCCCACT GCGTAATGAC AGGCGTGGTG ATGTGTTGTT ACTGATTAAC GGTATGCCGG TCATTCATGT TGAACTTAAA CGCAGTGGCG TGCCAGTTAG CCAAGCGGTT AACCAAATCG AAAAGTATTC CAAAGAAGGT ATTTTTAGTG GGCTGTTTTC ACTCATTCAA GTGTTTGTCG CCATGGAGCC TAATGAGGCC AAATACTTTG CTAACCCAGG GCTAGATGGC AAGTTTAATC CAGATTACCA ATTCAATTGG GCCGATTTTA ACAACGAGCC CATGAACCAT TGGAAAGATA TTGCCTCGAC ACTGTTATCC ATTCCCATGG CGCACCAGTT GATAGGCTTT TACACCGTTG CCGATGATAC CGATGGTGTG CTTAAAGTGA TGCGTAGTTA TCAGTATTAC GCCGCCAATG CGATATCGGA TAAGGTAGCC AAAACCAACT GGCAACAATT GGGTAGCGCT GCTAATAACC CAGACCGCTT GGGCGGCTAT GTGTGGCATA CCACAGGTTC AGGCAAAACC ATGACCAGCT TTAAATCAGC ACAGCTCATT GCCCAATCAA AAGATGCCGA TAAAGTCATT TTTTTGATGG ATCGCATCGA GTTGGGCACC CAGTCGCTGG CGGAATACCG TAATTTTGCA GGCGATGGTG AAGATGTACA AGCGACCGAA AATACTCATG TATTGGTAAC TAAGCTAAAA AGCACGTCCC CAGCCGATAC TCTAATTGTT AGCTCTATTC AAAAAATGAG TAATATTTTT GAAGAAGTGG ATGATGAAGG CACTGCAACA AACTCGGCAG ATATTGAAAA AATCCGCGCT AAACGCTTGG TATTTATTAT TGACGAGGCG CACCGTTCAA CGTTTGGCGA CATGCTGATC ATTATTAAAC GCACCTTTCC CCGCGCCTTG TTTTTTGGTT TTACTGGCAC TCCGATCCAA GAAGAAAATG AAAAAAACGG CAATACTACC AGTACCGTAT TTGGCAATGA GTTGCACCGC TACAGCATAG CCGATGGTAT TCGCGATGGT AACGTACTCG GCTTTGATCC CTATAAAGTG CCTACTTTTA GGGACGGTGA CTTAAGGCAG GCTGTCGCCC TAGAGCAAGC TAAGTCGGGA TCTGTAGCGG AAGCAATGGA TAATCCTGCC AAAAAGAAAA AATTTAATTA TTTTATGAAT GAAGTGCCTA TGGCTGGCTA CAAAGACTCT ACAGGTAAAT ACCACAAAGG TATTGAAGAT TACGTACCTA AAAGTCAGTA CCTAAGCGAG ACTCACCAAG CCAAAGTGGT AGAAGATATT CTGCACAAAT GGGATGTGCT AAGCCAAGGC AATAAGTTTC ATGCGATTTT GGCTACTAAC AGTATTGCTG AAGCCATTGA TTATTACCGT CTGCTAAAGG CTGCTAAGCC TGATTTAAAA GTATCAGCAC TGTTTGATCC TAACATTGAT AATGACGGCA GTGGTGACCG AGGGCCAACA TTTAAAGGTG ATGGCTTGGA TGAGATTATG CGTGATTATA ATGCGCGTTA TGGCCACGAT TTTGATTTTG CCCGCCATGC AGCATTTAAG AAAGATCTAG CCGCACGCCT TGCTCACAAA AAACCTTATG AGCGTATTCA TACCGATCCT ACAAAACAGT TGGATTTATT GATTGTTGTA GACCAAATGC TCACCGGTTT TGACTCCAAG TGGCTGAATG TCTTGTATTT AGATAAGGTA ATTAAATACC AAAACATCAT CCAAGCCTTC TCTCGTACCA ATCGATTGTT TGGCCCCGAT AAGCCTCATG GTGTTATCCG TTACTATCGT TACCCGCATA CGATGGAGCA ACATATTAAC GATGCGGTAA AACTATACTC TGGCGACAGA CCCATTGGGT TATTTGTTGA TAGGCTAGAA AGTAACTTAG AAGCAATGAA TGAACTGTTC GGTGATATTA CCGAGTTGTT CATTAGTGCC GGTGTGACAA ATTTTGAAAA ACTGCCAGAA GATGTTGAGG CGTGCGCAAA GTTTGCTGAA CTATTTAAAG TATTTAACCA GCATCTAGAA GCCGCGAAGA TACAAGGTTT ACATTGGGAG CAGTCGGTTT ATACATTCAC GACGAACGCT TCAACAGGCG AAAATGGCAC TGAACATGAG GTTACTCTCG CCATTAATGA ACAAACCTAC CTGAGCCTTG CGCTGCGTTA TAAAGAGCTC GCATCAAAAG GTGATGGTGG TGGTGCGGGT GGCGGAGGTG TGCCTTTTGA TATTAGTGGC TATTTGACGG AAATCGACAC AGGAAAGATT GATGCCGACT ATATGAATAG TCGCTTCGAT AAATATTTAA AAGAGCTAAA TCAGCATAAT GATCAAGCCA GCATTCAACT TACGCTTAAC GAACTGCACA AGTCATTTTC TTCACTGACG CAAGCTGAAC AAAAATACGC CAAGCTTTTC TTACATGATT TACAGCGTGG CGATGCAAAG TTAATAGAAG GCCATACTTT CAGAGATTAC ATCAACACCT ACAAAGACAA TGCTGAAAAC GCCCAGATTA ATGCCATTGT TAATGCGTTA GGTTTAGATA AAAGCCAGCT TATTAGCTTA TTAAACGATA GTGTCAATGA GAAACACCTT AATAATTTCG GTCGCTTTGA TGCGCTTAAA GACACTGTTG ATAAGGCAAA AGCCAAAGTT TATTTTGAAA AATTAGATGG CGTAACCATT CCACCTTTTA AGCTCAATAT CCGAATCGAT CAGTTTCTAA AACAGTTTAT TTTTGCTCAG GCAGATGATC TTTTAAATGA AATTTATGAA GATGTTACTG AGATGATTTA A
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Protein sequence | MTTFKTEAQF EQAFIEVLTH KGWEPEILKN KTEADLLQNW ANILFENNRQ QDRLNDVPLT ATEMQQIIEQ IKELKTPLKL NGLINGKTVA IKRDNPADAL HLGKEVSLKI YDRQEIAAGQ SRYQIVQQPK FERGSPLRND RRGDVLLLIN GMPVIHVELK RSGVPVSQAV NQIEKYSKEG IFSGLFSLIQ VFVAMEPNEA KYFANPGLDG KFNPDYQFNW ADFNNEPMNH WKDIASTLLS IPMAHQLIGF YTVADDTDGV LKVMRSYQYY AANAISDKVA KTNWQQLGSA ANNPDRLGGY VWHTTGSGKT MTSFKSAQLI AQSKDADKVI FLMDRIELGT QSLAEYRNFA GDGEDVQATE NTHVLVTKLK STSPADTLIV SSIQKMSNIF EEVDDEGTAT NSADIEKIRA KRLVFIIDEA HRSTFGDMLI IIKRTFPRAL FFGFTGTPIQ EENEKNGNTT STVFGNELHR YSIADGIRDG NVLGFDPYKV PTFRDGDLRQ AVALEQAKSG SVAEAMDNPA KKKKFNYFMN EVPMAGYKDS TGKYHKGIED YVPKSQYLSE THQAKVVEDI LHKWDVLSQG NKFHAILATN SIAEAIDYYR LLKAAKPDLK VSALFDPNID NDGSGDRGPT FKGDGLDEIM RDYNARYGHD FDFARHAAFK KDLAARLAHK KPYERIHTDP TKQLDLLIVV DQMLTGFDSK WLNVLYLDKV IKYQNIIQAF SRTNRLFGPD KPHGVIRYYR YPHTMEQHIN DAVKLYSGDR PIGLFVDRLE SNLEAMNELF GDITELFISA GVTNFEKLPE DVEACAKFAE LFKVFNQHLE AAKIQGLHWE QSVYTFTTNA STGENGTEHE VTLAINEQTY LSLALRYKEL ASKGDGGGAG GGGVPFDISG YLTEIDTGKI DADYMNSRFD KYLKELNQHN DQASIQLTLN ELHKSFSSLT QAEQKYAKLF LHDLQRGDAK LIEGHTFRDY INTYKDNAEN AQINAIVNAL GLDKSQLISL LNDSVNEKHL NNFGRFDALK DTVDKAKAKV YFEKLDGVTI PPFKLNIRID QFLKQFIFAQ ADDLLNEIYE DVTEMI
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