| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3349 |
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| Symbol | hsdR |
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| ID | 4184599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3826169 |
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| End bp | 3829060 |
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| Gene Length | 2892 bp |
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| Protein Length | 963 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 638073338 |
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| Product | type I restriction-modification system R subunit |
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| Protein accession | YP_679928 |
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| Protein GI | 110639718 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.531995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.015033 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCATAA TTTTTATACT AAAGATGTCT AAACAATCGG AACAAATATT AGAGGAACAA
TTACTTATTC AATTGCACAA ACTGGGCTAT GAAAAAGTAA TTTTGCCAAA TGAAGACGCA
TTGCTGCTTA ATCTGAAAAA GCAGCTTGAA AAGCACAATA AAATTACTTT TTCAAAAGCC
GAGTTTGATA AGGTCTTAAA TATTGTAAAT AAGGGCTCTG TTTTTGAAAA AGCTAAAATA
CTTCGACAAA GACAACATAT TATAAGAGAT AATGGCGATA ATCTGTATTT TGAATTTCTT
AATACAGACT ATTGGTGTCA GAATGAATAC CAAGTAACAA ATCAATTATC GCAGGAAGGC
AGATATCTGA ACCGGTATGA TGTTACCTTA TTAATTAATG GCTTGCCGTT GGTTCAGATA
GAACTTAAGA GAAGAGGCCT GGAATTAAAA GAAGCATTTA ACCAGATAGA TCGCTACAGA
AAACATAGCT TTGGTTCAGG CCATGGTCTA TATCATTTTG TACAGTTATT TGTGATCAGC
AATGGTGTTA ATACAAAATA CTTCGGAAAT TTTGGAATAC ACAAGCAGGA ATATTTGCAG
ACGTTTCACT GGACAGACGA AAACAATAAA CCGCTTAATA ATATTCTAAA TGGTTTTACA
GATACATTTT TAGAACCCTG TCATATCAGT AAAATGATAT GTAAGTACAT CGTTCTTCAT
GAGACAGAGA AGAAGCTCAT GGTTTTGCGT CCTTACCAAT ATTTCGCAGT AGAAAATATT
ATTAAAAAGG TAAAGGAAAA TGAAGTACTC AATGGTTATG ATATAAACAA AAACGGTTAC
ATCTGGCATA CTACAGGTAG CGGTAAAACC CTTACCAGTT TTAAAGCAAG TCAGATACTT
TCAAATATTC CTGCCATCAA AAAAGTGGTG TTTGTGGTGG ATAGGAAAGA TCTGGATTAT
CAGACGAATC AGGAATATGA AAAGTTTAGT CAAGGGTGTG TAAGCAGTGT TGGTAATACA
GATGATCTTA TTAAAAAGTT TAATGATCCT GCGGAACGTA TTATTGTTAC TACGATTCAG
AAATTAAATA ACGCAATTTC GGGTAAAAAT ATTTATAAAA TGAAAGCCAT GCAAGATCAA
CGCATGGTTT TCATTTTTGA TGAATGCCAT AGAAGTCAGT TTGGAGATAC TCATAAAAAT
ATCGTAAGTT ATTTTACCAA TATTCAGTTA TTTGGTTTTA CTGGTACTCC AATATTGGTA
GAGAATGCCA ACGGTGAAAA AACTACAGCA AGCTTGTTTG GTAAATGTTT GCATAAATAT
GTGATTACGG ATGCAATACG TGATGAAAAT GTTTTGCGTT TTTCGGTAGA GTATATTCAA
ACCTTTAAAC AAAAAGAGCA CATCGTTGAT TTAAAGATAG AACAGATCAA TGAAACAGAA
GTATTTGAAG CTCCTGAACG CAAAGAAGCA ATTGTAAATT ACATTTTGCA ACATCATAAA
CAAAAAACGC AGCAGGGCAA ATATTGTGCA ATGATGTGTG TACAGGATAT TGATTCAGTG
ATCCAGTACT ATGAAATACT AAAAGCAATG AAAAAGGCAG GAGAACATCA ACTGAAGATT
ATAACCATTT TTAGCTTTGC TCAAAACGAA GATCCATTGG ATTATGAAAT TAAAACGGAA
TTAAGTGTGG TTGAAGAGCC AAAAGCATTA TATGGCCTTC CACCACACAG ACGGGAATTA
TTAGATGCTT ATATAGGAGA TTTTAATCAG CTATATGATA CGGCTCATAG TACAAAAGAC
TCTCAAAGTT TTTACACGTA TTATAACGAC GTAGCTAAGA AGGCAAAAAA TAATGAGATG
GATATTTTAT TAGTGGCCAA TATGTTTCTT ACCGGTTTTG ATAGCAAATA TCTCAATACA
CTTTATGTTG ACAAAAATCT TCAATATCAT GGATTGATAC AAGCATTTAG CCGAACAAAC
CGAACGCATG ATAAAAATAA GACCCAGGGA AATATTGTTT GCTTTCGGAA TCTGAAAGAT
AAAACAGACG AAGCGATAAC GTTGTTCAGC AATCGGGAAG CAATTGATGA AGTAATCGTA
GCGCCTTATG AAACCTATGT GGAAGAGTTT AATAAAGCCG TAAATCAATT AAAAGCAATA
GTTCCCAATG TAGATTCAGT CGATGATTTA TATACAGAAG AAGACCAGCT GAAGTTTATT
CTGGCTTTCA GAAATATGAT TCGGCTACAT AAGAAAATGA GTCATTATAC AGAATTTACC
TGGGATGATC TTGAAATTGA GGAGCAGAGT TTTTTAGATT ACAGTAGCAA ATATCAGGAT
TTAAAGGACA GTATTGTTCA TAAATCTGAT AAAGAAAAAA CATCTATTCT GGATGATATT
GATTTTGAAT TAGAGCTGAT CAAAAAAGAC ACGATCAATG TTTCTTACAT CGTACAACTC
TTATTTAAAC TTAAAGTGAA GAAAGGTAAA AAAGATAAAG AAGAAGTTGA AAAAGAAATT
TTCAATCTGC TTAATACTGA AGTTTCACTT CGCAGTAAGA GAGAATTAAT TGAAAAATTC
ATCAAAGAAA ATATGTCCAA GATTGTTGAA GCCGAAGATA TCGTGGATGA GTTTACGAGG
TTCTGGAACG AAGAGCAGCA AAAAGCGTTT GATGAGTTAG TGCAGGATGA GAATCTTTCT
GCTGAACGTA CACAGCACCT TATCGAAGGT TACTTATTTT CTGAACAGGA ACCTTTGAGG
GATGAAATCT TAAAATTGCG AAATGAAGGA AGGCCTAGTG CTTTGCAGGC AAAAGACATT
AGCAATAGAA TTTTACAACG GATTAAAGAT TTCGTAAATA CATTTATAAA TGGAATGAAT
ATAGCAGCGT AA
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| Protein sequence | MSIIFILKMS KQSEQILEEQ LLIQLHKLGY EKVILPNEDA LLLNLKKQLE KHNKITFSKA
EFDKVLNIVN KGSVFEKAKI LRQRQHIIRD NGDNLYFEFL NTDYWCQNEY QVTNQLSQEG
RYLNRYDVTL LINGLPLVQI ELKRRGLELK EAFNQIDRYR KHSFGSGHGL YHFVQLFVIS
NGVNTKYFGN FGIHKQEYLQ TFHWTDENNK PLNNILNGFT DTFLEPCHIS KMICKYIVLH
ETEKKLMVLR PYQYFAVENI IKKVKENEVL NGYDINKNGY IWHTTGSGKT LTSFKASQIL
SNIPAIKKVV FVVDRKDLDY QTNQEYEKFS QGCVSSVGNT DDLIKKFNDP AERIIVTTIQ
KLNNAISGKN IYKMKAMQDQ RMVFIFDECH RSQFGDTHKN IVSYFTNIQL FGFTGTPILV
ENANGEKTTA SLFGKCLHKY VITDAIRDEN VLRFSVEYIQ TFKQKEHIVD LKIEQINETE
VFEAPERKEA IVNYILQHHK QKTQQGKYCA MMCVQDIDSV IQYYEILKAM KKAGEHQLKI
ITIFSFAQNE DPLDYEIKTE LSVVEEPKAL YGLPPHRREL LDAYIGDFNQ LYDTAHSTKD
SQSFYTYYND VAKKAKNNEM DILLVANMFL TGFDSKYLNT LYVDKNLQYH GLIQAFSRTN
RTHDKNKTQG NIVCFRNLKD KTDEAITLFS NREAIDEVIV APYETYVEEF NKAVNQLKAI
VPNVDSVDDL YTEEDQLKFI LAFRNMIRLH KKMSHYTEFT WDDLEIEEQS FLDYSSKYQD
LKDSIVHKSD KEKTSILDDI DFELELIKKD TINVSYIVQL LFKLKVKKGK KDKEEVEKEI
FNLLNTEVSL RSKRELIEKF IKENMSKIVE AEDIVDEFTR FWNEEQQKAF DELVQDENLS
AERTQHLIEG YLFSEQEPLR DEILKLRNEG RPSALQAKDI SNRILQRIKD FVNTFINGMN
IAA
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