| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5242 |
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| Symbol | |
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| ID | 8228853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 6318483 |
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| End bp | 6321407 |
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| Gene Length | 2925 bp |
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| Protein Length | 974 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644933089 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_003089602 |
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| Protein GI | 255038981 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAGC AACCAGAACA GATCCTTGAA GAACAATTAG TTGATCAACT TCAAAAGTTG
GGTTATGCTT TTGTGGCCAT CAAAGACGAA AAGCAGCTGA TTTCTAACCT CAAATCCCAG
CTTGAAAAAC ATAATAGTAT TGTTTTCTCA GATAAGGAAT TCGATAAAGT CCTCAACATC
CTCAATAAGG GTTCCGTATT TGAAAAAGCT AAAACACTAC GGGAGAAGCA GCATATCGTG
CGGGATAATG GGGAGAGCCT GTATTTTGAA TTTCTGAACC AGGAACATTG GTGCCAGAAC
CAGTTTCAGG TGACGCAGCA GGTGAGCATG GAGGGCGTTT ATAAGAACCG TTATGATGTG
ACGCTGCTCA TCAATGGTTT GCCACTGGTG CAGATCGAGC TCAAACGGCG CGGGCTGGAA
CTCAAAGAAG CATTCAACCA GATCAACCGA TATCAGCGGC ATTCTTTCGG CGTCAATTCG
GCGCTGTTTC AGTATGTGCA GATTTTCGTG ATCAGCAATG GTGTGAATAC CAAGTATTAT
GCCAATAACA AGAACCAGAC TTTTAAGCAG ACTTTTTACT GGAGTGATGT CGCTAATAAA
CGGCTGACGA ATATTCTCAA TGGCTTCACG AGCCAGTTTC TGGAACCGTG CCATATCTCC
AAAATGATAT GCAAATACAT TGTCGTCAGC GAAACGAATA AGGTTTTGAT GGTGCTTCGT
CCGTATCAGT TTTATGCAGT GGAAGCATTG GTGGAGCGGG TGAAGAATTC AGGAATCAAA
GGCCCGCATA AAAACGGGTA TATCTGGCAT ACCACCGGCT CGGGGAAGAC ATTGACGTCC
TTTAAAGCCA GCCAGATCCT GATGCATTTG CCGCAAGTGA AGAAAGTCGT TTTCGTGGTC
GACCGGAAAG ATCTGGATTA TCAGACTAAT AAGGAGTTTA ACATTTTCAG CAAAGGCAGC
GTCGACGGGA CGGACGATAC CCGGGCGCTG GTGAAGCAGT TTGCCGACGA TACCAAGCTC
ATCGTTACCA CGATCCAGAA ACTCAATTCG GCGATCGGCA AAAAGCAATA TCTCGATCAG
ATGGCGCGGA TGAAAGATGA GCGCATTATC TTCATTTTCG ACGAATGCCA CCGTTCGCAA
TTTGGTGAAA CGCACACGCG GATCAAATCA TTTTTCAATA ACATACAGCT TTTTGGCTTT
ACTGGGACGC CCATTTTTGC AGATAATGCA GTCAAGAATG AATTGGGAAA ACGGACCACC
ACGGAGCTGT TTGGCGAGTG CCTGCACAAG TATGTGATTA CGGACGCGAT CCGCGACGAA
AATGTTTTAA AATTCTCCGT CGAATATGTG GGCAGGTACA AGCAAAAAGA CGAAAGCCGT
ACAAATATAG ACATTGAGGT AGAAGACATT GACACCAAAG AACTGATGGA TTCGCCGGTT
CGTCTGGAAA AGATCGCGGA TTACATCCTC GCCAACCATG CACGGAAAAC ACACAGCCGC
GAGTTCACGG GCATGTTTTG CGTGAGCAGT GTGGAAACAT TAATCCGCTA TTACGAAATT
CTGCAGGCTA AAAAACTCGC CGGGCAGCAT AACCTCAAAA TTGCCACGAT TTTCAGCTAT
ACAGCCAATG AAGATGATCA GGATGCAAAC GGATCGATGA GCTATGAATC CGATCCGCCT
CCACTGCGAA TGGTGGCCGA TCCTCCGGCC CCTTACCTGA AAAAAGGCGA AGAGGCTGCG
CCGACTGCAC CTGTGATCAT CAATAAGCAC AGCCGGGAAA AGCTGGATGA ATACATCGGG
CATTACAACA AAATGTTTGG AACGGCTTAC TCCACCAAAG ACAGCGTTTC ATTTTACAAT
TATTACAACG ACGTTTCCAA AAAGGTTAAG GAAAAGCAGA TCGACATTCT GCTGGTTGTA
AACATGTTTC TGACAGGCTT CGACAGCAAG AAGCTGAACA CGCTTTACGT CGATAAAAAC
CTGAAATACC ACGGACTGAT CCAGGCTTAT TCGCGGACCA ACCGGATCGA TAATGATGTG
AAATCACAGG GGAACATCAT TGTCTTTCGC AACCTGAAAA AGGCCACCGA CGAAGCCATT
GCATTGTTCA GTAATAAGGA TGCGAAGGAC ATCATCATCA TGGAGCCGTA TGAGGATTAT
GCCGAGAAGT TTGGCGCTGC ATTCGATAAG TTACTCACGG TTGCTCCGAC TGTCGAAAGC
GTAAATCAGC TGACAACCGA ATACGACGAG CTGGAATTCA TCAAGGCATT CCGTGAGCTG
ATGCGGATCA AGAACGTGCT GACCACATTT GCCGATTTCA AATGGGAAGA CCTGGCGATG
AGCGAGCAGC TCTTTGAGGA TTACAAAAGC AAATACCTCG ACCTGCATGA CAAGGTGAAG
TTCGATACGC AGAAAGAAAA GGTATCGATC CTGGAAGATG TGGATTTTGA ACTGGAACTC
ATCCACCGCG ACGAGATAAA TGTCGCCTAC ATTCTGAAAT TGCTGGCAAA CTTGAACAAT
GGCAGCAAGG CAGACCAGGA AAAGAAACGC AAAGAAATCA TCGATCTCCT CACCGGGGAA
GCCAACCTGC GCAGTAAACG CGAACTGATC GAAAAATTCA TTGCCGAAAA CCTGCCCCGG
ATAGAAGACA ATGAAACACT GCCCGATGAA TTTGAGAAAT TCTGGAATGA AGAGCAGGTG
AAGGCATTCA AACAATTGGT GGAGGAAGAA AAACTTTCCG AACCCAAAAC CGAGAAACTG
ATTGAAAGCA TCCTCTTCTC AGAACGCGAG CCATTACGGG AGGAAGTACT TGGCTTATTG
GAAGGAAATA TGCCAACGGT TTTACAAAGG AAGAAAGTTG GGGAAAGAGT TTTGAGTAAG
ATCATGGGGT TTATTGAAAC TTTTGTTGAG GGGATTGTTG GGTGA
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| Protein sequence | MAKQPEQILE EQLVDQLQKL GYAFVAIKDE KQLISNLKSQ LEKHNSIVFS DKEFDKVLNI
LNKGSVFEKA KTLREKQHIV RDNGESLYFE FLNQEHWCQN QFQVTQQVSM EGVYKNRYDV
TLLINGLPLV QIELKRRGLE LKEAFNQINR YQRHSFGVNS ALFQYVQIFV ISNGVNTKYY
ANNKNQTFKQ TFYWSDVANK RLTNILNGFT SQFLEPCHIS KMICKYIVVS ETNKVLMVLR
PYQFYAVEAL VERVKNSGIK GPHKNGYIWH TTGSGKTLTS FKASQILMHL PQVKKVVFVV
DRKDLDYQTN KEFNIFSKGS VDGTDDTRAL VKQFADDTKL IVTTIQKLNS AIGKKQYLDQ
MARMKDERII FIFDECHRSQ FGETHTRIKS FFNNIQLFGF TGTPIFADNA VKNELGKRTT
TELFGECLHK YVITDAIRDE NVLKFSVEYV GRYKQKDESR TNIDIEVEDI DTKELMDSPV
RLEKIADYIL ANHARKTHSR EFTGMFCVSS VETLIRYYEI LQAKKLAGQH NLKIATIFSY
TANEDDQDAN GSMSYESDPP PLRMVADPPA PYLKKGEEAA PTAPVIINKH SREKLDEYIG
HYNKMFGTAY STKDSVSFYN YYNDVSKKVK EKQIDILLVV NMFLTGFDSK KLNTLYVDKN
LKYHGLIQAY SRTNRIDNDV KSQGNIIVFR NLKKATDEAI ALFSNKDAKD IIIMEPYEDY
AEKFGAAFDK LLTVAPTVES VNQLTTEYDE LEFIKAFREL MRIKNVLTTF ADFKWEDLAM
SEQLFEDYKS KYLDLHDKVK FDTQKEKVSI LEDVDFELEL IHRDEINVAY ILKLLANLNN
GSKADQEKKR KEIIDLLTGE ANLRSKRELI EKFIAENLPR IEDNETLPDE FEKFWNEEQV
KAFKQLVEEE KLSEPKTEKL IESILFSERE PLREEVLGLL EGNMPTVLQR KKVGERVLSK
IMGFIETFVE GIVG
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