| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_17680 |
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| Symbol | |
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| ID | 8395658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 1995629 |
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| End bp | 1998736 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644986522 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_003144136 |
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| Protein GI | 257064464 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGACG ACAAAGCCTC CTTCCGCTAC TCTGCCGCCA CGATGCCGAT GAACGAGGAC
TTCTTCGAGC AGGTCATCAT CGAGCACCTT CGGGACGAGC ACGGCTACGA GTTCCTGCAC
GGCCCCGACG TGCCGCGCAC CACCCCCGAC TACCGCGACG TTTTCCTGCC GGCCGTCCTG
CCGGACAGTC TAAGGCGCAT CAACCCGGGC CTTCCCACAG CCGCCATCGA GCAGGCGGTC
CTCAAGATCT CGAACATCGA GGCCGGCGGG CTCTACCAGA AGAACGAGGT GTTCAACGAC
TACCTGCAGT CGGGCGTTGA GGTGCACTTC TACGACGGAA AGGAGGAGCG GGACGACATC
GTCTACCTGC TGGACTTCGA TGACCCCGAG AACAACTCCT TCCACGTGGT CAACCAGTGG
ACCTTCGTGG AGTACTCGCA GAAGCGCCCC GACGTCGTCG TGTTCGTGAA CGGCATGCCG
CTCGTCGTCT TCGAGCTCAA GAGCCCGTCC CGCGAGGAGA CCGACGCGTC GGATGCCTAC
CTGCAGCTGC GGCAGTACAT GAAACAGATT CCCAGCATGT TCGTGCCGAA CGTGTTCTGC
GTGATGAGCG ACATGAGCGA GACGCGCGTG GGAACCATCA CCGCCGACGA GGACCGCTAC
GTCTCCTGGA AGAGCGTGGA CGGCGACTAC TCCGGCACGA AGGGGGCCAC ATGGAGGACG
ATGCTCGACG GCATGATGCC GAAGGCGCGG CTGCTCGACA TCGTCAGGAA CTTCGTATGC
TTCAACGACG ACTCGTCCAG GGTCGTCAAG ATCCTCGCGG GCTACCACCA GTATTTCGGC
GTGACGAAGG CGGCCGACCG GGCCGTGGAG GCGGTGGCGG GCGACGGCAA GATCGGCGTG
TTCTGGCACA CGCAGGGCTC GGGCAAATCG CTCTCGATGG TCTTCTTCGC CCACCTGCTG
CAGGAGCGGC TGGAGAGCCC CACCATCGTG GTCATCACCG ACCGAAACGA CCTGGACGAT
CAGCTCTACG GGCAGTTCTG CCGCTGCGCG CCGTTCCTTC GCCAGACGGC CGTGCAGGCG
ACGAGCCGGG ACGGAGCGAA CGACAGCACC AGCCTGAAGC GGCTGCTCGT CGGGCGCGAG
GCGAACGGCA TCGTCTTCAC GACGATGCAG AAGTTCATGG ACGGCGAGGA GCCTTTGTGC
GACCGCAGCA ACGTGGTGGT GATGGTTGAC GAGGCGCACC GAGGGCAGTA CGGGCTCACC
GAGCGCATGG ACGCAGAGGG CAACGTGCGA GTCGGCGCCG CCCGCGTCGT GCGCAAGGCG
CTACCGAACG CGAGCTACAT CGGCTTCACC GGCACCCCGA TATCGACCGA GGACAAGAAC
ACCCGCGAGA TCTTCGGCGA CTACATCGAC GTGTACGACA TGACCCAGGC GGTTGAGGAC
AACGCGACCC GCCCCGTCTA CTACGAGAGC CGCGTGGTGG CGCTGAAGCT GGACGAGGCC
AAGCTCGCGC AACTCGACGC CGCCTACGCC GAGTTCGCAT CCGAGGCCAA CGCGGTCAGC
GTGGAGAAGG CCAAACGCGA CACGGGAGGA CTCGACGCAA TATTCGGCGC GCCCGAGACC
ATCGACGCGC TCTGCCGCGA CATCATAGAC CACTACGAGA ACAACCGCGC CGACATCCTG
GCGGGAAAGG CCCTCATAGT CGCGTACAGC AGGCCCGTGG CCATGAAGAT CTACTACCGC
ATGATGGAGC TGCGTCCCGA GTGGAAAGAC AAGCTCGGCG TCGTGATGAC GATGGGCAAC
CAGGACCCCG AGGAGTGGTT CGACGTCTGC GGCGGCAAGA CGCACAAGAA GGAGATGGAG
CGCCGGTTCA AGGACGACTG CGACCCGCTC AAGATCGCCA TCGTCGTGGA CATGTGGCTC
ACCGGCTTCG ACGTGCCGAG CCTCGCCACC ATGTACGTGT TCAAGCCTAT GAGGGGCCAC
AACCTCATGC AGGCCATCGC CCGCGTTAAC CGAGTGTGCA AGGGCAAGGA GGGCGGCCTG
GTCGTGGACT ACATCGGCAT AGCCCGCGCC CTCAAGCAGG CGATGAAGGA CTACACCAAC
CGCGACCAGT CCAACTACGG CGACATGGAC GTAGCGGCCA CCGCCTACCC GAAGTTCCTG
GAGAAGCTGG ACGTGTGCCG CGACCTCATG TACGGCTTCG ACTACCGCAA GGCCATCTTC
ACCGACAGTA AGGCGCAGCT CGCGTCCGCC ATCGCAGAGG GCACCGACTG GCTGCTGGAG
CCCTCGCGCG AGGAGGACCG CGAGGACTTC ATCAAGCAGT GCCAGCTGAT GAACCAGGCG
CTCAGCCTAT GCAAGAGCCT GGTATCCGAG GAGGACCAGC ACGAGGCGGC CTACCTCTCC
GTCCTGCGCG TGCAGGTGCT GCGGCTGACG GGCCGGCAGG GCTCCGGCGG AGGCGGCATG
ACCTACGCCG AGTTCAACAA GCGCGTGACC GCCATTCTCG AGCAGACAGT GCAGGCCGAC
GGCGTCATCG ACCTGTTCGA GAAGGACAGC GTGGAGATAT CACTCTTCGA CGAGGCGTTC
TTGCAGGAGC TCGCCAACAT GAAGCAGAAG AACATCGCCG TCGAGAGCCT CAAACGCCTC
ATCAAGGAGC GCGTGCGCGC CTATCAGCGC ACGAGCGTGG TGAAGGCGGA GAAGTTCAGC
GACATGCTGC AGGGCACGCT CAACGCCTAC CTGAACGGCA TGCTCACCAA CGCGCAGGTC
ATCGAAGAGC TCGTGAACAT GGCCAAGGAG ATGATGAAGG ACCGCACCGA CGCCGAGAAG
CTGGGGCTAT CCGACGAGGA GATGGCCTTC TACGACGCGA TAACCAAGCC GCGGGCCGTG
AAGGACTTCT ACGACAACGA CCAGCTCGTC GCCATCACGC GGGAGCTGAC CGAGGCGATG
CGCACGAACG CCACCATCGA CTGGCAGCGC AAGGAGTCGG CGCGCGCCGG CATGCGCCGC
GCCATCAAGC GGCTTCTGAG GAAGTACAAG TATCCGCCCG AGGGCGCCGA TGAGGCCATG
ACCACCGTCA TGGCTCAGTG CGAGCTCTGG GCAGACACCA AGATCTAA
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| Protein sequence | MFDDKASFRY SAATMPMNED FFEQVIIEHL RDEHGYEFLH GPDVPRTTPD YRDVFLPAVL
PDSLRRINPG LPTAAIEQAV LKISNIEAGG LYQKNEVFND YLQSGVEVHF YDGKEERDDI
VYLLDFDDPE NNSFHVVNQW TFVEYSQKRP DVVVFVNGMP LVVFELKSPS REETDASDAY
LQLRQYMKQI PSMFVPNVFC VMSDMSETRV GTITADEDRY VSWKSVDGDY SGTKGATWRT
MLDGMMPKAR LLDIVRNFVC FNDDSSRVVK ILAGYHQYFG VTKAADRAVE AVAGDGKIGV
FWHTQGSGKS LSMVFFAHLL QERLESPTIV VITDRNDLDD QLYGQFCRCA PFLRQTAVQA
TSRDGANDST SLKRLLVGRE ANGIVFTTMQ KFMDGEEPLC DRSNVVVMVD EAHRGQYGLT
ERMDAEGNVR VGAARVVRKA LPNASYIGFT GTPISTEDKN TREIFGDYID VYDMTQAVED
NATRPVYYES RVVALKLDEA KLAQLDAAYA EFASEANAVS VEKAKRDTGG LDAIFGAPET
IDALCRDIID HYENNRADIL AGKALIVAYS RPVAMKIYYR MMELRPEWKD KLGVVMTMGN
QDPEEWFDVC GGKTHKKEME RRFKDDCDPL KIAIVVDMWL TGFDVPSLAT MYVFKPMRGH
NLMQAIARVN RVCKGKEGGL VVDYIGIARA LKQAMKDYTN RDQSNYGDMD VAATAYPKFL
EKLDVCRDLM YGFDYRKAIF TDSKAQLASA IAEGTDWLLE PSREEDREDF IKQCQLMNQA
LSLCKSLVSE EDQHEAAYLS VLRVQVLRLT GRQGSGGGGM TYAEFNKRVT AILEQTVQAD
GVIDLFEKDS VEISLFDEAF LQELANMKQK NIAVESLKRL IKERVRAYQR TSVVKAEKFS
DMLQGTLNAY LNGMLTNAQV IEELVNMAKE MMKDRTDAEK LGLSDEEMAF YDAITKPRAV
KDFYDNDQLV AITRELTEAM RTNATIDWQR KESARAGMRR AIKRLLRKYK YPPEGADEAM
TTVMAQCELW ADTKI
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