| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0366 |
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| Symbol | hsdR-1 |
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| ID | 2741086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 412512 |
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| End bp | 415631 |
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| Gene Length | 3120 bp |
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| Protein Length | 1039 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 637159238 |
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| Product | type I restriction-modification system, R subunit |
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| Protein accession | NP_970980 |
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| Protein GI | 42525882 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAAAG TCAATGAAAC GGAACGCGAA ACACAAGATA GAATCCTGAA GCTTTTCTGT
GATAAAGAAA ATTTGAATTA CATATATGCA GGAAATTTAC ATAATCAAAT AAATAAAAAT
ATTGTAGAGA ATGATTTACT CACTTGGCTG ACTTCTTCAA AAGGCGGGGA TTGGAATAAA
ATCACTGCAA AAAAAGTCCT TACTGAATTA CAAAAAGTTG CAAATAATTT AGAACAAGGT
TTATATAAAG CGAACCAAAA TGTTTACTCT CTTTTAAAAT TTGGAATAAA TATTATCGAT
CAAGCAGGAA AACCGGCTCG TACTGTATAT GTTATAGATT GGGAAAATCC TTATAACAAC
AATTTTGCAG TTGCAGAAGA AGTAACACTA AAACTTGGTT CCGAACGCCG TCCTGATCTC
GTAATTTATG TAAATGGAAT CGCTCTTGCT GTTATCGAAC TAAAAAAAGC CGGCATTTCT
GTGGCTAACG GTATACGTCA AAATATTTCT AATCAAGGTG AACTATTTAA TAAAGCATTT
TTTTCTACTA TTCAATTTTG TATGGCAGGA AATTATACTG AAGGCTTGCG TTATGGTACT
ATCAAAACAA AAGAAACATA TTATCTTGAA TGGAAAAATG ATATGGTTCA CACACATGCA
CAGCCGCTTG ATCAAGATTC TCTTGATATA CTTGAAAAAT GTAAAACATT TCCCGATAAA
TTTGATAACT CTATTTTCAG CATGTTTTAT AAACCTAGAT TTCTTGATCT TATTCATAAT
TTTATCCTTT TTGACAACGG TATAAAAAAA GTATGCAGGC ATAATCAATT TTTTGGCGTA
AAGAAGGCTC AGATAAAAAT ATCAAAAAAC CAGGGCGGAA TTATTTGGCA TACACAGGGA
AGTGGAAAAA CTCTTACCAT GGTCTGGCTT TCAAAATGGA TACTATCACA AAATGATAAT
GCCCGTGTGC TGATTATAAC CGATAGAGAA GAATTAGATG AGCAAATCGA AAAAAAATAT
ATCGGTGTAA ATGAAAAACA CATAAAAAGA ATAACATCCT GTTCTGATTT AATAGAGCGT
TTGCAAGGAA CTACAGATAA GCTTATGTGC TCTCTAATTC ATAAATTCGG TGTTCATGGA
TATTCCGGCT CAGATGAACA AGAGGATAAG GCAAGAAAAA AATCCGTTGA ACAATTTCTT
AAAGAGTTGA GGGAATCTCT TCCTAAAAAT TTTAAGGCAC AAGGGGATTT TGTTGTTTTT
GTTGATGAAT GTCATAGAAC ACAAAGCGGC CTTTTGCATA TCGGCATGAA GGAAATTCTG
CCTGATGCCA TTTTTATCGG ATTTACCGGA ACACCGCTAT TAGTAAAAGA TAAAAAAACA
AGCCTTGAAG TTTTTGCTCC AGGTTATATT CATACATATA AATATGATGA AGCAGTCGCA
GATAATGTTG TCCTTGACCT GCGGTATGAA GCCAGAGATA TCGATCAAAC CATTACATCA
CAAGAAAAAA TAGATGAGTA TTTTGAAGCC AAAACACGCG GTCTAAACGA TGCTGCAAAG
GCAAAACTTA AAGCCCTATG GAGTAATATG CAAAATGTAT ACAGCTCTCG CAAGCGGTTG
GAAGTTATTG CAGAAGACAT AGTCTCCGAT TTTGCAATAA AAAGCAGACT TGTAAATGGA
AATGGTAATG CCATTCTTGC CGCCGACAGT ATTTACGATG CATGTAAGTA TTATGAAATC
TTAAAATCAA AAGGGTTTAC CTCTTGTGCA ATTATAACAT CCTTTATACC GGAAGAAAAA
AAACTCAGTA CCGAAAGCGA GGATTCTGAA GAATTTAAAA AATTCACGGT GTATAAAGAA
ATGTTGGGTG GACAAAGTAT TGAAAGCTTT GAAGAAGAGG CTAAACGTAA ATTTATTGAA
GAACCTGCTT CTATGCAGCT GCTAATTGTA GTTGATAAAC TCTTAACGGG TTTTGATGCT
CCTCCCTGTA CTTATCTTTA TATTGATAAA GCAATGAAGG ATCATAGTTT ATTTCAAGCA
ATCTGCCGAG TAAACCGTCT TGACGGCGAA GAAAAAGACT TCGGATATAT TGTTGACTAT
AAGCAATTAT TCGGCAGCTT AGCTGATGCA ATACACAAAT ATACTTCAGG AGCATTTGAA
GGCTTCGATG AAGATGATAT AAAAGACTTT TTAAAGGATC GACTTACCGA AGCAAAAAAA
TATTTAGAAA CAACTCTTGA AGAGTTAAAT GATTTATGCG ATGGAATTAA AGCACCTCAC
CCTCAAATAA TAGATTACAT TCATTATTTT TGCGGTGAAG ATGGAGTATC CGGAATTGAT
GATGAAATAT GTTCACGCAG CCGAGAGAAA TTATACACGC TCGTAAATCG TCTTATCCGT
GCCTATGCGG AAATAAAAGG CGATATGGAA GCCGCCGGTT ATACATTGGA AGAGCGTATA
GAAATTGACA ATAAAGTACG GTTTTACACA TCTCTTAAAA TGGAAATAGG CAATGCAAGC
GGTGATTTTA TCGATCTTAA ATCTTATGAA AAAGATATGC GTTATCTCAT AGACACATAT
ATAAAAGCTG ACGATAGCCG TAAATTGGGA GCATTTGATA ATTTTACACT TCTTGATTTT
ATTTTAATTC AGGCTGAAAA ACTGAAAGGA GAAAATAAAG AGGCAGCAGC AGAAGCTATC
GAAAATAATA TTCGAAAAAA AATAGTAGAA AAACAGCTTA TCAATCCTAA ATATTATGAA
AAACTTTCGG CAATCCTTTT GCAGCTCATT GAAGAAAGAC GCAAAGGAGT TCACAGTTAT
GAGGAACTCT TAAATAAATA TATTCAATTG GTAAAGCAAT TGGAACAACC TGAAAATAAT
CCGGAATACC CTAAAAGTAT TAGAAATAGA GGAACACTGC GGGCATTTTA CGATAACTTC
GGCAATGATG AAGAATTTGC TCTTACCATT GATAAGGCAA TTCGGGAAAG CAAAGAAGCG
GATTTTAGAT ATAATAAGCA AAAAGAACGT AAAATAAAAA ATGCCTTATA TGCCGTAGTT
AATGATAAAG AAAAAATTGA AGAAATTTAC AATCTTGCTG TAGAACAGCC GGAGTATTAA
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| Protein sequence | MPKVNETERE TQDRILKLFC DKENLNYIYA GNLHNQINKN IVENDLLTWL TSSKGGDWNK
ITAKKVLTEL QKVANNLEQG LYKANQNVYS LLKFGINIID QAGKPARTVY VIDWENPYNN
NFAVAEEVTL KLGSERRPDL VIYVNGIALA VIELKKAGIS VANGIRQNIS NQGELFNKAF
FSTIQFCMAG NYTEGLRYGT IKTKETYYLE WKNDMVHTHA QPLDQDSLDI LEKCKTFPDK
FDNSIFSMFY KPRFLDLIHN FILFDNGIKK VCRHNQFFGV KKAQIKISKN QGGIIWHTQG
SGKTLTMVWL SKWILSQNDN ARVLIITDRE ELDEQIEKKY IGVNEKHIKR ITSCSDLIER
LQGTTDKLMC SLIHKFGVHG YSGSDEQEDK ARKKSVEQFL KELRESLPKN FKAQGDFVVF
VDECHRTQSG LLHIGMKEIL PDAIFIGFTG TPLLVKDKKT SLEVFAPGYI HTYKYDEAVA
DNVVLDLRYE ARDIDQTITS QEKIDEYFEA KTRGLNDAAK AKLKALWSNM QNVYSSRKRL
EVIAEDIVSD FAIKSRLVNG NGNAILAADS IYDACKYYEI LKSKGFTSCA IITSFIPEEK
KLSTESEDSE EFKKFTVYKE MLGGQSIESF EEEAKRKFIE EPASMQLLIV VDKLLTGFDA
PPCTYLYIDK AMKDHSLFQA ICRVNRLDGE EKDFGYIVDY KQLFGSLADA IHKYTSGAFE
GFDEDDIKDF LKDRLTEAKK YLETTLEELN DLCDGIKAPH PQIIDYIHYF CGEDGVSGID
DEICSRSREK LYTLVNRLIR AYAEIKGDME AAGYTLEERI EIDNKVRFYT SLKMEIGNAS
GDFIDLKSYE KDMRYLIDTY IKADDSRKLG AFDNFTLLDF ILIQAEKLKG ENKEAAAEAI
ENNIRKKIVE KQLINPKYYE KLSAILLQLI EERRKGVHSY EELLNKYIQL VKQLEQPENN
PEYPKSIRNR GTLRAFYDNF GNDEEFALTI DKAIRESKEA DFRYNKQKER KIKNALYAVV
NDKEKIEEIY NLAVEQPEY
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