| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3424 |
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| Symbol | |
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| ID | 3758401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 3385668 |
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| End bp | 3388622 |
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| Gene Length | 2955 bp |
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| Protein Length | 984 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637784336 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_389912 |
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| Protein GI | 78358463 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAACG AAGAAAACAC GGTCGAACAG ATGGTCCTCG ACACGCTCTG TGGCGGCGTG
ACTTCGAACA TGGTTGCCGA AGAGCTCGCC AGCTACGGCG GTGAAATCAA GGGCTGGCGC
TTCGTGGCCG CCGAGGAGCT GCCCCGTCAG CACTCCGACG TGCTGGTGGA GTCGATGGTG
CGCGACGCCC TCATCCGCCT GAACCCGGAA ATCAAGGCCC AGCCCGACCG CGCCGACGAG
GTGCTCTATC GCCTGCGGAC CATTCCGCTG TCTGTGCAGA GCGAAGGCCT GGTGCGGGCC
AACGAGCTGT TCGCCGAATG GCTGCGGGGC GAAAAATCCA TGCCTTTCGG CGAGCGCGGC
GAACACACGC CGGTGCGCCT GATCGACTTC GAGAATCTCA GCAACAACGA TTACGTGGTC
ACCAATCAGT GGGTCTACCC GATCAAGGAA GGCGGCCGCC GCTTCGACAT CATCATGCTG
GTCAACGGCA TCCCGCTGGT GGTCGGCGAG GCCAAAACGC CGGTGCGCCC GGCGGTGACC
TGGGTGGACG GGGCCAGCGA CATTCACAAC GGCTACGAAC AGAGCGTGCC ACAGATGTTC
GTGCCCAACG TCCTCTCCTT TGCCACCGAG GGTAAGTGCT ATCGCTACGG CTCAGTGCGC
ATGCCCATCG ATATCTGGGG GCCGTGGCAC GAGGGCGAGA ACAAGGCCGA GGGGACGCTT
GCGGACGTGC AGCGCTCCAT CCGCTCCATG CTGCGCCCCC ATGTGGTGCT GGACATCCTG
CAGAATTTCA CCCTGTTCGC CACCGACAAG AAGCACCGGC GCATCAAGAT CATCTGCCGC
TATCAGCAGT ACGAAGGCGC GAACCTGATG GTGGCCCGCG TGGTCAAGGG CTATCCCAAG
AAGGGCCTGA TCTGGCATTT CCAGGGTTCG GGCAAATCGC TGCTGATGGT TTTCGCGGCG
CAGAAGCTGC GGATGCATCG CAAACTCGGA AACCCCACTG TGATGATCGT GGTGGACCGC
ATCGATCTGG ACACCCAGAT CACCGCCACC TTCAATGCCG CCGATATTCC GAACATGATC
GGAGCCGCCA CCCGGCAGGA GCTGCAAGGC CTGCTGGCGG CCGATACCCG CAAGATCATC
ATCACCACCA TTCACAAGTT CGGCGAGGCG GACGGCCGCC TGAACGAGCG CTCGAACATC
ATCGTGATGG TGGACGAGGC GCACCGCACC CAGGAAGGCG ACTTAGGCCG CAAGATGCGC
GATGCGCTGC CCAACGCCTT TCTCTTTGGT CTGACCGGCA CGCCGATTAA CAAGAGGGAC
CGCAACACCT TCTGGGCCTT CGGCGCGGAC GAGGATGAGC AGGGCTATAT GAGCCGTTAC
TCGTTCCAGG ACTCGATCCG GGACAAGGCC ACGCTGCCGC TGCATTTCGA GGCGGTGGAC
GTGAAGCTGC ATATCAACAA AGACGCCATC GACGAAGCCT ACTCTCAGAT GACCGATGAG
CTGAGCGAGC TGGATCGTGA CGACCTGGCC AAGCGGGCCG CCAAGATGGC GGTGCTGATC
AAGGCCCCGG CGCGGGTGAA CGCCATCTGC CAGCACATCG TCAAGCACTT CCAGGAAAAG
GTGGAGCCGA ACGGCTTCAA GGCCCAGGTG GTGACCTTCG ACCGGGAATG CTGCGTTCTC
TACAAGAAGG CCATGGACGA GCTGGTCGGC CCGGAGGCCA GCGCCATCGT CATGCATACC
CAGGGCGGAA AGTCCGACGA GTACGCGGAA TGGAAATTGG CCAAGGACGA GGAGGAAAAG
CTCCTCGACC GTTTCCGCGA TCCGAACGAC CCGCTCAAGT TCCTGATTGT CACATCCAAG
CTGCTGACCG GCTTCGATGC GCCCATTCTG CAAGTGATGT ACCTCGACAA GCCGATGAAG
GATCACAACC TGCTGCAGGC CATCTGCCGT ACCAACCGCG TCTACTCCGG CAAGACCCAC
GGCCTGGTCG TGGATTACCT GGGCATCTTC GATGACGTGG CCACGGCCCT CGATTTCGAT
GAAAAGGCGG TGCAGAAGGT CATCACCAAT TTGGATGACC TCAAGAAAGA GCTGCCCGGC
GTGGTGGCAA GATGCCTGGC GTTCTTCCCC GGCGTGGACC GAACCGTGGG CGGCTACGAG
GGGCTGATCG CGGCGCAGGA CTGCCTGCCG GATAACGAGA CCCGGGACAA GTTCGCGGCG
GAATACTCGG TGCTCTCCCG GCTGTGGGAG GCGCTGTCGC CCGATCCCTG TCTCGGCCTT
TATGAAAAGG ACTATAAGTG GCTGACCCAG GTCTATGAAT CGGTGAAGCC GCCGAGCGGC
AACGGCAAGC TTCTCTGGCA CGCCCTGGGG GCCAAGACCA TCGAGCTGGT CCATGAAAAC
GTGCATCTGG AGACGGTGCG CGACGATCTG GACACCCTGG TGATGGACGC CGAGGTCCTC
GAAGGGCTGC TCGATGCCAA GGACCCGGAC AAGAAATCCA AGGAAATCGA GATCAAGCTC
ATCGCCCGCC TGCGCAAGCA CAAGGACAAT CCGAAGTTCG TCGCCTTGGG CGAACGCCTC
GAAAAGCTCA AGGAACGGCA CGAACAGGGC CTGCTCCACA GCCTCGACTT CCTCAAGGAG
TTGCTGACCC TGGCCAGGGA GGTCGTCCAG GCCGAGAAGC AGGTGGACCC GGTCGATGAA
CAGGCCAAGG CCAAAGCGGC CCTGACCGAA CTGTTCGCCG AGGTGAAGAA CGGCAAGACG
CCGATGGTGA TCGAGCGGAT CGTGACCGAC ATCGACGAGA TCGTGCGCCT GGTCCGGTTC
CCCGGCTGGC AAAACACCAA AGCCGGAGAG CGCGAGGTCC AGAAGGCCCT GCGCAAAGTG
ATTTACGTGA AGTACCAGGT CAAGGACCAG GATCTGTTCG ACAAGGCGTT CGGATATATC
CGGCAGTACT ACTGA
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| Protein sequence | MFNEENTVEQ MVLDTLCGGV TSNMVAEELA SYGGEIKGWR FVAAEELPRQ HSDVLVESMV
RDALIRLNPE IKAQPDRADE VLYRLRTIPL SVQSEGLVRA NELFAEWLRG EKSMPFGERG
EHTPVRLIDF ENLSNNDYVV TNQWVYPIKE GGRRFDIIML VNGIPLVVGE AKTPVRPAVT
WVDGASDIHN GYEQSVPQMF VPNVLSFATE GKCYRYGSVR MPIDIWGPWH EGENKAEGTL
ADVQRSIRSM LRPHVVLDIL QNFTLFATDK KHRRIKIICR YQQYEGANLM VARVVKGYPK
KGLIWHFQGS GKSLLMVFAA QKLRMHRKLG NPTVMIVVDR IDLDTQITAT FNAADIPNMI
GAATRQELQG LLAADTRKII ITTIHKFGEA DGRLNERSNI IVMVDEAHRT QEGDLGRKMR
DALPNAFLFG LTGTPINKRD RNTFWAFGAD EDEQGYMSRY SFQDSIRDKA TLPLHFEAVD
VKLHINKDAI DEAYSQMTDE LSELDRDDLA KRAAKMAVLI KAPARVNAIC QHIVKHFQEK
VEPNGFKAQV VTFDRECCVL YKKAMDELVG PEASAIVMHT QGGKSDEYAE WKLAKDEEEK
LLDRFRDPND PLKFLIVTSK LLTGFDAPIL QVMYLDKPMK DHNLLQAICR TNRVYSGKTH
GLVVDYLGIF DDVATALDFD EKAVQKVITN LDDLKKELPG VVARCLAFFP GVDRTVGGYE
GLIAAQDCLP DNETRDKFAA EYSVLSRLWE ALSPDPCLGL YEKDYKWLTQ VYESVKPPSG
NGKLLWHALG AKTIELVHEN VHLETVRDDL DTLVMDAEVL EGLLDAKDPD KKSKEIEIKL
IARLRKHKDN PKFVALGERL EKLKERHEQG LLHSLDFLKE LLTLAREVVQ AEKQVDPVDE
QAKAKAALTE LFAEVKNGKT PMVIERIVTD IDEIVRLVRF PGWQNTKAGE REVQKALRKV
IYVKYQVKDQ DLFDKAFGYI RQYY
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