| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0616 |
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| Symbol | |
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| ID | 4928417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009135 |
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| Strand | + |
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| Start bp | 581563 |
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| End bp | 584637 |
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| Gene Length | 3075 bp |
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| Protein Length | 1024 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 640166118 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001097143 |
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| Protein GI | 134045657 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.945786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAATC CATATATAAA TACAGAAATA AAAGTCCAAA AAGATTCAAT TGAACTTTTA
AAAAATTTAG GATACGAATT CATTTCAGAA GACGAAAATA AACTTCTAAG AAATAACTTA
AAAGAAGTAA TTTTAAAAGA TATTTTAAAA GAACAGCTTA ATAAATTAAA TTCTTACAAT
TACAAGGGAA AAACATACAA ATTTTCAGAA AAATCAATTG AAAATGCAAT AGCTGATCTT
GATGTTCCAT TAACTGAAGG TCTAATCAAA TCAAATGAAC ACGTATATGA CCAATTAATT
TTGGGAAATT CTTATGAAGA AACTCTTGAT GATTGCAGCA AGAGAAGTTT TTCAATAAAA
TATATTGATT TTGATAACCC TGAAAACAAC GTATTTCACG TAACCGAAGA ATACACTGTT
CAAAAACAAA ATTTAAACCA AACAGAAAGA AACAAAAGAC CCGACTTAAT TTTATTTGTA
AATGGTATCC CCTTAGGAAT TATCGAACTT AAAAGGACGT CAGTATCGGT CGAAACGGGA
ATTTCTCAGG TTATAAATTA TCAAAACAGA GATTATATCC CCCATTTATT TAGATACATT
CAAATTGCAG TTGCAGGAAA TCCTGGAAAT GTTTATTATG CAACAACCGG AACTGAAAAG
AAATTCTGGT CAGTATGGAA AGAAGACCTT TCAGATGATT TATTAAACAG TATAGTAAAG
AATAGAATTC CAACAAAACT TGATAAGGAC ATCTATTCCC TATTTAATAA AGCTAGATTT
TTAGAAATTA TAAAAGAATA CACAATTTTT GATGCAAATA TCAAAAAAAT TGCAAGATAT
CAGCAGTATT TTGCAATAAA AGAAACTTTA AAATCAATTG ATAATTTTGA TGCAAATGGA
ATTAGAAGCG GGGGACTTAT CTGGCACACT CAAGGATCAG GAAAATCCCT AACGATGGTA
ATGCTTACAA GGGCATTAAA AAGAAAGATT AATAATTCAA AAATTGTTGT CGTAACTGAT
AGGGTAGATC TTGATAAACA GATCAAAGAA ACCTTTTTAC ATGCAAGATT GGATGTGTTA
AGAGCAACTA CTGGTCAAAA TCTTGTAAAA TTTTTAAAAG AAAACAAAGA TGCGGTAATT
ACAACTGTTA TCAATAAGTT TGAGTCAGCC ATGAGAAATG ATATCATAAA TGATTCTTCA
AATGTGTTTG TATTAGTTGA TGAGAGCCAC AGAACTCAGT ATGGAACTTT TCACGCAAAA
ATGAAAAAGA CATTCCCACA CGCATGCTAT ATTGGGTTTA CTGGAACTCC ATTAATGAAA
AAAGAAAAGA ATTCATTCAA TAAATTTGGG CATATGATTC ACAAGTACAC AATGGATCAG
GCAGTAGCTG ACAAGGCGGT AGTTCCACTA TTGTATGAGG GAAGAGAAGT TCCACAGGAA
ATTACTGATA AAAAATGGCT CGATAAGAAA TTTGAACTTA TTTCAAGAGA TCTTTCAGAC
GAACAGAAAG AAGATTTAAA GAAAAAATGG GCAATATTCC AAAAAGTTGC ATCAAGTGAG
AGAAGACTCG AAGTAATTGC AATAGATATC AATGAACACT TCAAAAAGAA TTTACTTGGA
ACAGGATTTA ACGCAATGCT TGCAACAAAT TCAAAATTTG AAGCAGTAAG ATATCATAAA
ATTTTTGAGA ATTATGGGGA TATCAAAACC GCATTTGTAA TTTCACCTCC AGATTTGAAG
GAAGGAGTCG AAGAATTGGA CGATGAAAAT AAAAAACTCG TGCAAAACGA ATGGGGAAAA
ATAATTAAAA ATTACGGATC CGAAGAAGAT TACGAAGATA GAATTAAAAG TGAATTTAAA
GCCGGAGAAA TCGATCTATT GATTGTTGTT GATAAATTGT TAACAGGATT TGATTCTCCA
CGGACAACGA CACTTTATGT GGACAAGGAA TTGAAAGACC ACAGGCTCCT TCAGGCAATT
GCAAGGGTAA ATAGGCTCTA TGATGAAAAA GATTGTGGAT TTATTATTGA TTATAGGGGG
CTCTTAGGAA AACTGGATAT GGCACTTACA AGCTACACTT CACTTGCAAA CTTCGATGAA
GAAGATCTTG GAACTACAAT GATAAATACG GAGCAAGAAA TCCATCTTTT TAAAAATTAC
TACTCGCATT TGATAGATTT ATTTAAACCC GTGAAAAACA AAAATGATAG GGAAGAATAC
GAAGTATTTT TAGCAAATAA CGATCTAAGA AAGGAGTTTT ATAAATATTT AAAACACTAC
GTAAAGCATC TTGGATATGC ACTTTCAAGT GAGCAGATAT ATGATCTCGT AGATGATTTG
AAAAAATACA AAAATGCGTT AAAATTCTAT GTAGAACTTA GAAAAAATGT ATCTTTAAGA
TATTATGAAA GAATAGACTT TGGAAAATAC GAAGAGCATA TGCAAAAATT ACTTGACACG
TATATCGGTG CAAGTGATGT TGAACATTTA ACTGAACTTG TAAATATTTT TGATGTCGAA
AACTTCAATC GAGAAATTGT AAGGGTTGAA GGGGGCCGTG CAAAAGCAGA TCTCATTAAA
AGTGCTGTTG AAAAGCATAT CAAACATAGT TTTGACGAAA ACCCAGTATA TTACCAATCA
CTCTCTGATA GAATTAAAGA AGTTTTAGAC AAATATCATG AAAAACGGAT TTCAGATGAA
GAATATTTGA AAAGTATGCA ACATGTCCTA AAAGATGTGC AATCTAAAAA TATGGATCTA
AAAACCTATC CAACATTAAT TTCTGAAAGT CAGGATGCAA AAATAATATT TGATAACATT
TACGAGTATT TTGGAGAATA TACTGGAAAC GGCTTTGAAG ACGATTTAGC AGAATTATCA
CTGAAATTTG ATAGTGAAAT TAAAAAGAAT CTAAAAGTTA ATTGGGTAGA AAGCCAAGAT
GTTCACAATT CAATCAAACA GGGAATTGAT GATATTTTAT GGAATTTAGA AGATGAAATG
GATATTTCGG TAGATAATGA AAAAATCATT GAAAAAATAA TGACAATGGC AATAAGCAGA
TACGGGAAAT TATGA
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| Protein sequence | MSNPYINTEI KVQKDSIELL KNLGYEFISE DENKLLRNNL KEVILKDILK EQLNKLNSYN
YKGKTYKFSE KSIENAIADL DVPLTEGLIK SNEHVYDQLI LGNSYEETLD DCSKRSFSIK
YIDFDNPENN VFHVTEEYTV QKQNLNQTER NKRPDLILFV NGIPLGIIEL KRTSVSVETG
ISQVINYQNR DYIPHLFRYI QIAVAGNPGN VYYATTGTEK KFWSVWKEDL SDDLLNSIVK
NRIPTKLDKD IYSLFNKARF LEIIKEYTIF DANIKKIARY QQYFAIKETL KSIDNFDANG
IRSGGLIWHT QGSGKSLTMV MLTRALKRKI NNSKIVVVTD RVDLDKQIKE TFLHARLDVL
RATTGQNLVK FLKENKDAVI TTVINKFESA MRNDIINDSS NVFVLVDESH RTQYGTFHAK
MKKTFPHACY IGFTGTPLMK KEKNSFNKFG HMIHKYTMDQ AVADKAVVPL LYEGREVPQE
ITDKKWLDKK FELISRDLSD EQKEDLKKKW AIFQKVASSE RRLEVIAIDI NEHFKKNLLG
TGFNAMLATN SKFEAVRYHK IFENYGDIKT AFVISPPDLK EGVEELDDEN KKLVQNEWGK
IIKNYGSEED YEDRIKSEFK AGEIDLLIVV DKLLTGFDSP RTTTLYVDKE LKDHRLLQAI
ARVNRLYDEK DCGFIIDYRG LLGKLDMALT SYTSLANFDE EDLGTTMINT EQEIHLFKNY
YSHLIDLFKP VKNKNDREEY EVFLANNDLR KEFYKYLKHY VKHLGYALSS EQIYDLVDDL
KKYKNALKFY VELRKNVSLR YYERIDFGKY EEHMQKLLDT YIGASDVEHL TELVNIFDVE
NFNREIVRVE GGRAKADLIK SAVEKHIKHS FDENPVYYQS LSDRIKEVLD KYHEKRISDE
EYLKSMQHVL KDVQSKNMDL KTYPTLISES QDAKIIFDNI YEYFGEYTGN GFEDDLAELS
LKFDSEIKKN LKVNWVESQD VHNSIKQGID DILWNLEDEM DISVDNEKII EKIMTMAISR
YGKL
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