| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbur_1841 |
|---|
| Symbol | |
|---|
| ID | 3997502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcoides burtonii DSM 6242 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007955 |
|---|
| Strand | - |
|---|
| Start bp | 1937996 |
|---|
| End bp | 1940857 |
|---|
| Gene Length | 2862 bp |
|---|
| Protein Length | 953 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637959585 |
|---|
| Product | HsdR family type I site-specific deoxyribonuclease |
|---|
| Protein accession | YP_566474 |
|---|
| Protein GI | 91773782 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAC AATCGGAAGC TGTATTGGAA GAGCAGTTGG TCGGGCAACT TTGTGAATTG
GGTTATTCTT TAGTGAGGAT AAAGGATGAG GCGGAGCTGA TTGCTAATTT GAAGGGGCAA
TTGGAGAAGC ATAATGAGAT CGTGTTCTCG GATAATGAGT TCAAAAAAGT GATGAACTTA
CTTAGCAAGG GTAGTGTGTT CGAGAAGGCT AAGAACTTGC GGGAAAAGCA ACATATTCTG
CGTGATAATG GGGATGACCT TTATTTTGAC TTCCTGAACA CGGAACATTG GTGTCAGAAT
GAATATCAGG TGACGCATCA GGTAGCGATG GAAGGGAAAT ATAAGAACCG CTATGATGTG
ACGTTATTGG TCAATGGTCT GCCATTGGTA CAGATAGAAC TCAAAAGGCG TGGACTTGAA
CTAAAAGAGG CGTTCAATCA GATACAACGC TATCAAAAGC ACTCATTTGG CTCACACGCT
GCATTATTCC AGTATATTCA GATATTTGTC ATCAGCAACG GTGTGAACAC AAAATACTAC
GCCAACAATC GTAAGCAATC CTTCAAGCAG ACATTCTACT GGACAGACGA AGAGAACCAG
CGTCTCAGCA ATATCCTTAA CGGCTTCACA AGGGATTTTC TGGACCCTTG CAACCTCTCC
AAAATGATAT GTCGCTACAT CGTACTGAAC GAAGCCCAGA AAATACTCAT GGTACTTCGC
CCCTATCAGT TCTATGCAGT AGAAGCCCTC ATTGACAGAG TAAAACACAG CCATAAGAAC
GCTTACATCT GGCACACAAC CGGCTCAGGA AAAACACTGA CATCCTTTAA AGCCAGTCAG
ATATTAACAA AACTGCCCAC AGTCAAAAAA GTAGTCTTTG TAGTCGATAG AAAAGACCTC
GACTATCAAA CAACAAAAGA ATTCAACAGT TTTAGCAAAG GCTGCATCGA TGGTACGGAC
AACACAAAAC AACTGGTCAA ACAACTTAGT GACGACACAG CACTCATTGT CACCACCATT
CAAAAACTAA ATGTTGCCAT CAGCAAAAAA CAATATCTTG AAAAAATGGA GCAGCTCAGA
GACCAGCGTA TAGTCTTCAT CTTTGACGAA TGCCACCGCT CACAATTTGG CGAAACCCAC
AAACGCATAA ATCAATTCTT CAAGAATCCT CAAATGTTCG GTTTCACAGG CACACCCATA
TTTGCCGAAA ACGCCATCAA GAACGAATCT GGAAGACGCA CCACCAAAGA TCTCTTTGGC
GAATGTCTTC ATAAATACGT CATAACCGAT GCAATAGCCG ATGAGAACGT CCTGAAATTC
TCCGTAGAAT ACGTAGGACG CTACAAACAA AAAGAAGGTC GGGAAACCAG CATTGACATA
GAGGTAGAGG ACATCGATAC AAATGAGTTA ATGGAATCCC CTGAGCGTCT GGAGAAAATA
TCAGATTATA TAATAGCCCA TCACTCCCGT AAAACACACA ACAGGGAATT CACCGCAATA
TTTACCGTAA GCAGCATAAA AACCCTGATA AATTACTATG ATATACTGCA AAGAAAGAAA
GCAGAAGGCA AGCATGATCT AAAAATTGCG ACAATCTTCA GTTATACCGC CAACGAAGAA
GATCCCGATG CTAACGGCTT CTTCAGTGAT GACACTCAAA TATTAGATCC AAAGGCAAAA
TACGGCAGCA CAATATCCAA ACACAGCCGT GAAAAACTGG ATGAATATAT CGAAGACTAC
AACAAGCTCT TTAACAGTAA ATTCTCCACC AAAGACAGCC AATCCTTCTA CAACTACTAC
AATGATATCT CTAAAAAAGT AAAAGAGAAA AAAATCGACA TTCTGATAGT CGTGAACATG
TTCCTCACAG GTTTTGATAG TCCATTCCTG AACACTATCT ATGTAGATAA GAACCTGAAA
TATCACGGAC TTATTCAGGC ATATTCACGT ACCAACCGGA TACTCAACGA ACAGAAATCA
CAGGGTAATG TAGTAGCATT CAGGAACCTG AAAAAAGCAA CAGATGCTGC TATTACATTA
TTTAGCAACA CCGAAGCCAT CGAAGTCATT ATAATGCAAC CCTACGAGGA CTATATTGCA
AAATTCGATG AAAAATATGA TGCACTTCAA AGAATAACAC CAACCGTAGA AAGTGTAAAT
ACATTATCCT CTGAAAATGA AGAACTGGAA TTCATTACCA CATTCAGAGA AATAATGCGT
ATATTAAATA TCACTAAAGC ATTTGCAGAC TTCAAATGGT CAGACCTTTC AATGACAGAG
CAACTTTTCG AAGACTACAA AAGTAAATAT CTCGACCTTT ACGACAAAGT AAAAAGCGAT
CATCAAAAAG AGAAAGTTTC CATCTTAGAA GATGTGGATT TCGAACTGGA ATTAATTCAC
CGTGATGAAA TAAACGTTAA TTACATCATC CAGTTACTCA TCCAGCTAAA ATTCGATGCT
CAAAAAGATG TGGATCAAGT CGAAAAGGAA ATATCCAGAG TATTAAGTTC TGAATCAACT
CTCAGAAGCA AAAAAGAATT GATAGAGAAA TTCATTCAAG AGAATCTCCC TGATATCCAT
ACAAGCGATA GTGTTTCAGA AGAATTTGAT CAATTCTGGA ACAATGAACA GCAAAAGGCC
TTTGAGCAAC TGGTAAAAGA CGAAGTTCTA TCAGAAGAGC GAACCCAAAA ACTCATAGAA
AACTATCTAT ACGCTGAACA AGAACCACTA TTAGATGAGA TATTGGAATT AATAGAAGGT
GCACAACCAT CCGTACTGAA GCGCAAAAAG ATAGGTGCTA GAATATTGGA AAAGATAAAG
GATTTTATTG ATACTTTCAT TGATGGTATG GATTCAAATT GA
|
|---|
| Protein sequence | MSTQSEAVLE EQLVGQLCEL GYSLVRIKDE AELIANLKGQ LEKHNEIVFS DNEFKKVMNL
LSKGSVFEKA KNLREKQHIL RDNGDDLYFD FLNTEHWCQN EYQVTHQVAM EGKYKNRYDV
TLLVNGLPLV QIELKRRGLE LKEAFNQIQR YQKHSFGSHA ALFQYIQIFV ISNGVNTKYY
ANNRKQSFKQ TFYWTDEENQ RLSNILNGFT RDFLDPCNLS KMICRYIVLN EAQKILMVLR
PYQFYAVEAL IDRVKHSHKN AYIWHTTGSG KTLTSFKASQ ILTKLPTVKK VVFVVDRKDL
DYQTTKEFNS FSKGCIDGTD NTKQLVKQLS DDTALIVTTI QKLNVAISKK QYLEKMEQLR
DQRIVFIFDE CHRSQFGETH KRINQFFKNP QMFGFTGTPI FAENAIKNES GRRTTKDLFG
ECLHKYVITD AIADENVLKF SVEYVGRYKQ KEGRETSIDI EVEDIDTNEL MESPERLEKI
SDYIIAHHSR KTHNREFTAI FTVSSIKTLI NYYDILQRKK AEGKHDLKIA TIFSYTANEE
DPDANGFFSD DTQILDPKAK YGSTISKHSR EKLDEYIEDY NKLFNSKFST KDSQSFYNYY
NDISKKVKEK KIDILIVVNM FLTGFDSPFL NTIYVDKNLK YHGLIQAYSR TNRILNEQKS
QGNVVAFRNL KKATDAAITL FSNTEAIEVI IMQPYEDYIA KFDEKYDALQ RITPTVESVN
TLSSENEELE FITTFREIMR ILNITKAFAD FKWSDLSMTE QLFEDYKSKY LDLYDKVKSD
HQKEKVSILE DVDFELELIH RDEINVNYII QLLIQLKFDA QKDVDQVEKE ISRVLSSEST
LRSKKELIEK FIQENLPDIH TSDSVSEEFD QFWNNEQQKA FEQLVKDEVL SEERTQKLIE
NYLYAEQEPL LDEILELIEG AQPSVLKRKK IGARILEKIK DFIDTFIDGM DSN
|
|---|
| |