| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_0502 |
|---|
| Symbol | |
|---|
| ID | 7857866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 554998 |
|---|
| End bp | 558045 |
|---|
| Gene Length | 3048 bp |
|---|
| Protein Length | 1015 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643864580 |
|---|
| Product | type I site-specific deoxyribonuclease, HsdR family |
|---|
| Protein accession | YP_002880527 |
|---|
| Protein GI | 229819001 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.840857 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGACA CCGCGTCGAA GTTCGAGCCG ATCGCGATGT CGTCGGATTC GACCGTCGTC
GCGGAGTTCA CGGCGGACCC CGCCGAGGCG ACGCGGTACC AGTCGGAGGC CGAGCTCGAG
GCCGAGCTGG TCCGCCTGTT GCGTGAGCAG GCCTACGAGT ACCTGCCGAT CACCTCCGAG
TCGGACCTGG TCGCGAACTT GCGAAGGCAG CTCGAGGCCC TGAACCACAT CACCTTCACC
GATGCCGAGT GGAAGCGGTT CTTCGCCGAG AGGATCGCCG GGGAACGGGA CGGCATCGTC
GAGAAGACGG TCCGGATCCA GGAGGACCAC GTTCAGCTCC TGAAGCGCGA TGACGGCACG
AGCAAGAACA TCACGCTGCT GGACAAGACC CACATCCACA ACAACCGGCT GCAGATGATC
AACCAGTACG AGGTGCCGGG TGCGCCGTCG TCGGACGGGG CCGGCCGGCC GCGGCGCGCG
AACCGCTACG ACGTGACGAT CCTGGTCAAT GGACTCCCGC TCGTGCACGT CGAGCTGAAG
CGCCGCGGGG TCGATCTGCG GGAAGCGTTC AACCAGATCA ACAGGTACCA GCGCGACTCG
TTCTGGTCCG GATCGGGCCT GTTCGAGTAC GTGCAGCTCT TCGTGATCTC CAACGGGACG
CTCACGAAGT ACTACTCGAA CACCACCCGC AGCCAGCACC TGAGCGAGCA GGGCAAGGCC
AAGCGCGGGC GGAAGACGTC GAACTCGTTC GAGTTCACGT CGTGGTGGGC GGACGCGACG
AACCGACCGA TCATGGACCT CGTCGGGTTC ACCAGGACGT TCTTCGCCAA GCACTCGCTG
CTGAACGTGC TGACGAAGTA CTGCGTGCAG ACAGCGGACC GGATGCTGCT GGTGATGCGT
CCGTACCAGA TCGCTGCGAC CGAGCAGATC CTCACGCGGA TCGAGACGTC GTCGAACCAG
AAGCGGTTCG GCACGCTGTC TGCCGGCGGA TACGTGTGGC ACACCACCGG CTCGGGCAAG
ACGTTGACGT CGTTCAAGAC GGCGCAGCTC GCCTCGAAGC TCGGTGGCGT GGACAAGGTG
CTGTTCGTCG TCGACCGCAA GGACCTGGAC TACCAGACCA TGCGCGAGTA CGACAGGTTC
GAGAAGGGCG CGGCGAACTC CAACACCTCC ACTGCCGTGC TCAAGCGGCA GCTCGAGGAC
CCGTCGAAGC GAATCATCAT CACCACGATC CAGAAGCTGT CGACGTTCAT CGCCAAGAAC
GCGGGCCACG CCATCTACGG CGGGCACGTG GTGACCATCT TCGACGAGTG CCACCGCTCC
CAGTTCGGCG ACATGCACAC CGCGATCACC AAGGCGTTCA AGCGGTACCA CCTGTTCGGG
TTCACCGGGA CCCCGATCTT CGCGGTCAAC GCCGGCACGG GCGGGAACCC GACCCTCCGG
ACCACGGCGC AGGCGTTCGG AGACAAGCTG CACACGTACA CGATCGTGGA CGCGATCACC
GACAGGAACG TGCTCCCGTT CCGCATCGAC TACGTCAACA CCGTCAAGGT CGGCGCCGTG
ATCGACAAGC AGGTCTCGGC GATCGACACG GAGAGGGCGC TGCTCGACCC GGCCCGCGTG
CGCCAGGTCA CCCAGTACGT CCTGGACCAT TTCGACCAGA AGACCAAGCG CAACCAGACG
TACGCCTTGA AGGACCGGCG TGTCGTGGGG TTCAACGCGC TCTTCGCGAC CGCGTCGATC
GACGCGGCGA AGGTCTATTA CAACATGTTC AGCCTCCTCC AGGAGGACCT GCCTGACGCG
AAGAAGCTGA AGGTCGGGCT GATCTACTCC TACGCCGCCA ACGAGGCCGA GGACGAGACC
GCGGCCGGGC TGCTGGGCGA GGAGGAGTTC GAGACTCACG ACCTCGACGC CAGTTCACGG
GACTTCCTGG AGGACGCAAT CCAGGACTAC AACGACATGT TCGGGACCTC GTTCGACACC
AGCGCGGACA AGTTCCAGAA CTACTACAAA GACCTGTCGC TGCGGCTAAA GGACCGCGAG
ATCGACCTGG TCATCGTCGT CAACATGTTC CTCACGGGGT TCGACGCCAC CACGATGAAC
ACCCTGTGGG TGGACAAGGA CCTGCGCGCG CACGGTCTGG TCCAGGCGTA CTCGCGGACC
AACCGGATCC TGAACTCGGT CAAGACTTAC GGCAACATCG TCTCCTTCCG CGATCTCGAG
CAGGAGACGA ACGACGCGAT CGCGCTGTTT GGCAACAAGG ACGCCGCCGG CATCGTCCTC
CTCAAGCCCT ACGGGGAGTA CTTCGACGAG TACGCCGACA AGGTCACCGA GCTGCGCGAG
CGCTTCCCCC TCGGCACGCC GATCGTCGGG GAGCAGGCAC AGAAGGACTT CATCGCCGTC
TTCGGGGCGC TGCTGCGGCT CCGCAACATC CTGCTCTCCT TCGACAACTT CGCGGGCAAC
CAGATCCTGT CCGACCGGGA CCTGCAGGAC TACCAGTCGA TCTACCTGGA CCTGTACCAG
TCGTTCCGTC GCGCCGACAC CGCGGAGCGG GAGACGATCA ACGACGATGT CGTGTTCGAG
ATCGAGCTAA TCAAGCAGGT CGAGATCAAC GTCGACTACA TCCTCATGCT CGTCGAGAAG
TACCGGGCGG CCAAGGGCGA CGGTGACGAC CGGGAGATCA GGGCGACCAT CGACCGGGCC
ATCGACTCCA GCCCGTCCTT GCGCAACAAG AAGGACCTCA TCGAGGAGTT CGTCGACCGG
CTGTCCGTGG ATGAGGACGT GGCTGCCGAG TGGCGCGCCT ACGTCGCGAC GAAGCGCGAC
GCCGAGCTCG AGCAGATCAT CGCGGACGAG AACCTCAAGC CCGACCAGAC ACGCGCCTTC
ATCGACACCG CGTTCCGCGA CGGCCAGGTT CGGGTCACCG GCACCGCGGT GACCGCGCTC
CTGCCCCCGG TGTCGCGGTT TGCGAAAGGC TCGAACCACG GTGCCAAGAA GCAGACGGTC
ATCGAGAGAC TTACGGCGTT CTTCGAGCGG TTCTTCGACT TGCAATGA
|
|---|
| Protein sequence | MTDTASKFEP IAMSSDSTVV AEFTADPAEA TRYQSEAELE AELVRLLREQ AYEYLPITSE
SDLVANLRRQ LEALNHITFT DAEWKRFFAE RIAGERDGIV EKTVRIQEDH VQLLKRDDGT
SKNITLLDKT HIHNNRLQMI NQYEVPGAPS SDGAGRPRRA NRYDVTILVN GLPLVHVELK
RRGVDLREAF NQINRYQRDS FWSGSGLFEY VQLFVISNGT LTKYYSNTTR SQHLSEQGKA
KRGRKTSNSF EFTSWWADAT NRPIMDLVGF TRTFFAKHSL LNVLTKYCVQ TADRMLLVMR
PYQIAATEQI LTRIETSSNQ KRFGTLSAGG YVWHTTGSGK TLTSFKTAQL ASKLGGVDKV
LFVVDRKDLD YQTMREYDRF EKGAANSNTS TAVLKRQLED PSKRIIITTI QKLSTFIAKN
AGHAIYGGHV VTIFDECHRS QFGDMHTAIT KAFKRYHLFG FTGTPIFAVN AGTGGNPTLR
TTAQAFGDKL HTYTIVDAIT DRNVLPFRID YVNTVKVGAV IDKQVSAIDT ERALLDPARV
RQVTQYVLDH FDQKTKRNQT YALKDRRVVG FNALFATASI DAAKVYYNMF SLLQEDLPDA
KKLKVGLIYS YAANEAEDET AAGLLGEEEF ETHDLDASSR DFLEDAIQDY NDMFGTSFDT
SADKFQNYYK DLSLRLKDRE IDLVIVVNMF LTGFDATTMN TLWVDKDLRA HGLVQAYSRT
NRILNSVKTY GNIVSFRDLE QETNDAIALF GNKDAAGIVL LKPYGEYFDE YADKVTELRE
RFPLGTPIVG EQAQKDFIAV FGALLRLRNI LLSFDNFAGN QILSDRDLQD YQSIYLDLYQ
SFRRADTAER ETINDDVVFE IELIKQVEIN VDYILMLVEK YRAAKGDGDD REIRATIDRA
IDSSPSLRNK KDLIEEFVDR LSVDEDVAAE WRAYVATKRD AELEQIIADE NLKPDQTRAF
IDTAFRDGQV RVTGTAVTAL LPPVSRFAKG SNHGAKKQTV IERLTAFFER FFDLQ
|
|---|
| |