| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1956 |
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| Symbol | |
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| ID | 4278868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2321573 |
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| End bp | 2324686 |
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| Gene Length | 3114 bp |
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| Protein Length | 1037 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134743 |
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| Product | type I site-specific deoxyribonuclease, HsdR family protein |
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| Protein accession | YP_750640 |
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| Protein GI | 114563127 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.160894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACGT ATAAAACGGT TGCTGAATCC AATAACTTTA TTGTGTTAGA TAAATACGTC
AAAAATTGGC AAGTCGCAGA AAGCTTTCAA AGTGAAGGTG ATTTAGAACG TGAGCTGATT
CAGGACCTAA GCAACCAGGG CTATGAGTAT TTACCTGCGC TAACGACACC CGATGCCATG
CTGGCGAATG TGCGCAAGCA GCTACAAGCC CTTAATAAGG TCCAGTTTAC CGATGCCGAA
TGGGCGCGCT TTTGCGAGCA GTATCTGAAT ACACCGAGCG ACAATATTCT TGATAAAACT
CGCAAGGTGC ACAGCGACTA TATCTTCGAT TTTGTCTTTG ATGATGGCCA TATCGAAAAC
ATCTACCTGT TCGACAAGAA GACCATTGCT CGTAACAAAG TGCAGGTCAT TAAGCAGTTT
GAGCAAACGG GAAGCCATGC CAACCGTTAC GATGTGACGA TTTTGGTTAA TGGTTTGCCT
TTGGTGCAAA TCGAGCTGAA AAAGCGTGGT GTGGCAATCC GTGAGGCGTT TAACCAAATA
CATCGCTACA GCAAAGAAAG CTTTAATACT GAGAACTCTT TGTACAAGTT CTTGCAGCTG
TTTGTGATCT CGAATGGCAC CGACACGCGC TATTTTGCCA ATACCACGAA GCGCGACAAA
AACAGCTACG ACTTTACGAT GAACTGGGCG AAGTCAGACA ATACGCTGAT CAAGGATTTA
AAAGACTTTA CGGCGACTTT TTTCCAGAAA GAGACCTTAC TTGAAGTGAT CTTGCGTTAC
TCGGTGTTTG ACGTCAGCAA TACCTTACTT GTAATGCGCC CCTACCAGAT TGCGGCCACT
GAGCGCATTT TATGGAAGAT AAAGAGCGCG TTTAACGCTA AAGACTGGGC TAAGCCTGAA
AGCGGGGGTT ACATTTGGCA CACCACGGGT TCAGGAAAAA CACTCACCAG CTTTAAAGCG
GCACGTTTGG CCACCGATTT AGACTGCATC GATAAAGTAT TTTTTGTGGT GGACCGAAAA
GACCTCGACT ATCAGACCAT GAAAGAGTAT CAGCGCTTCT CACCTGATAG TGTGAACGGT
TCAGACAGTA CCGCAGGGCT TAAGAGTAAC CTGGATAAAG ACGATAACAA GATTGTCGTC
ACCACAATCC AAAAGCTCAA TAACTTAATC AAAAGTGAAA GCGATTTAGC TATCTACAAC
AAGCAGGTTG TCTTTATTTT TGATGAGTGT CATCGAAGCC AGTTTGGTGA AGCGCAGAAA
AACCTGAAGA AGAAATTCAA AAAGTACTAC CAGTTTGGAT TTACCGGTAC GCCAATTTTC
CCTGAAAATG CCTTGGGTGC TGAAACCACG GGCAGCGTGT TTGGTCAGCA GTTGCACACG
TATGTGATCA CTGACGCCAT TCGTGATGAA AAAGTACTCA AGTTCAAAGT GGACTATAAC
GATGTTCGTC CGCAATTTAA GAGCATTGAG ACTGAGCAGG ATGATAAGAA GCTTAGTGCG
GCGGAGAATA AGAAAGCCTT CTTACATCCA ATGCGCATTC GTGAAATTTC GCAGTATATT
CTGAGCTATT TTAACCAGAA AACGCATCGA GCCTATTCTG GCGCTAAAGG GTTTAACGCC
ATGTTTGCGG TCAGTAGTGT TGATGCGGCG AAAGCGTACT ATGAAACCTT CAAAACATTG
CAGGCCGAGG CTGAGAATGG ACCTACAAGT AAACCTCTGC GCATTGCAAC TATCTTCTCA
TTTGCTGCCA ATGAAGAGCA GGACGCCATT GGTGATATTT TAGATGAGAG CTTTGAAGTC
AGTGCCATGA ACAGCAGCGC GAAAGAGTTT TTGAGCGCCG CGATTAACGA TTACAACGCC
ATGTTTAAAT CTAACTATGG CGTGGACAGT AATGGTTTTC AGAATTATTA CCGTGACCTT
GCCCAGCGAG TGAAGAATCA AGAAATAGAT CTACTCATAG TGGTTGGTAT GTTTTTAACG
GGCTTTGATG CGCCTACGCT TAACACCTTG TTTGTTGATA AGAATTTGCG CTATCACGGT
TTGATGCAGG CGTTTTCTCG CACTAACCGC ATTTATGATG CAACTAAGAC CTTTGGCAAT
ATTGTTACCT TCCGTGATTT GGAGCAGGCA ACCATTGATG CCATCACCTT GTTTGGTGAC
AAAAACACCA AAAACGTGGT GTTGGAGAAG AGCTACAAAG AATACATGGA AGGTTTTAAC
GATATTGCTA CTGGCCAAGC GCGTCGAGGT TTTGTTGATA TCGTAAAAGA GCTGCAAGAA
CGCTTTCCAA ACCCAGAAAA TATTGAAAAA GAACAAGATA AAAAGGAATT TGCCAAGCTG
TTTGGTGAAT ACCTCAAAGC AGAAAATATT TTACAAAACT ACGATGAGTT TGCTGGATTA
AAAGCGCTGC AAAGCTTAGA TACCAGTGAT GAACAAGCGG TTGAAGAGTT CAAGTCAAAG
TACTATCTGG ACGATGCTGA CATCGAGGCA ATGCAAGCTA TCGATATGCC AAGCGAGCGC
GCTATTCAAG ATTATCGCTC TACCTACAAC GATACCCGCG ACTGGTTGCG ACGCGATAAA
GAAGGTCAGG ACAAAGATAA GTCAACGGTA GACTGGGACG ATGTGGTCTT TGAAATTGAT
TTGCTTAAAT CGCAAGAAAT CAACCTCGAC TACATTCTTG AACTGATTTT TGATCACAAT
AAGAAGAACA AGAGCAAAGA AGGCTTGATT GAAGAAGTCC GCCGTATGAT CCGCGGTAGC
CTTGGCAATA GAGCGAAAGA GAGCTTGGTG GTTGATTTTA TTAACCAGAC AAACCTAGAT
GAGATCAATG ACAAAGCCAG CATTATCGAC GCTTTCTTCA AGTTCGCCCA GGCGGAGCAG
AAGCGCGAAG CCGATGCCAT CATTGCCTCT GAAAAGCTCA ATATCGATGC TGCCAAACGC
TATATTGCGT CATCACTCAA ACGTGAGTAC GCCTCTGAAA ATGGCACTGC ACTTAATGAG
GCGCTGCCCA AACTTAGCCC ATTGAACCCA CAGTACCGAA CCCAGAAGCA AACGGTTTTT
CAGAAAATTG CCGCTTTTGT TGAAAAGTTT AAAGGTGTGG GTGGTCAGTT GTAG
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| Protein sequence | MTTYKTVAES NNFIVLDKYV KNWQVAESFQ SEGDLERELI QDLSNQGYEY LPALTTPDAM
LANVRKQLQA LNKVQFTDAE WARFCEQYLN TPSDNILDKT RKVHSDYIFD FVFDDGHIEN
IYLFDKKTIA RNKVQVIKQF EQTGSHANRY DVTILVNGLP LVQIELKKRG VAIREAFNQI
HRYSKESFNT ENSLYKFLQL FVISNGTDTR YFANTTKRDK NSYDFTMNWA KSDNTLIKDL
KDFTATFFQK ETLLEVILRY SVFDVSNTLL VMRPYQIAAT ERILWKIKSA FNAKDWAKPE
SGGYIWHTTG SGKTLTSFKA ARLATDLDCI DKVFFVVDRK DLDYQTMKEY QRFSPDSVNG
SDSTAGLKSN LDKDDNKIVV TTIQKLNNLI KSESDLAIYN KQVVFIFDEC HRSQFGEAQK
NLKKKFKKYY QFGFTGTPIF PENALGAETT GSVFGQQLHT YVITDAIRDE KVLKFKVDYN
DVRPQFKSIE TEQDDKKLSA AENKKAFLHP MRIREISQYI LSYFNQKTHR AYSGAKGFNA
MFAVSSVDAA KAYYETFKTL QAEAENGPTS KPLRIATIFS FAANEEQDAI GDILDESFEV
SAMNSSAKEF LSAAINDYNA MFKSNYGVDS NGFQNYYRDL AQRVKNQEID LLIVVGMFLT
GFDAPTLNTL FVDKNLRYHG LMQAFSRTNR IYDATKTFGN IVTFRDLEQA TIDAITLFGD
KNTKNVVLEK SYKEYMEGFN DIATGQARRG FVDIVKELQE RFPNPENIEK EQDKKEFAKL
FGEYLKAENI LQNYDEFAGL KALQSLDTSD EQAVEEFKSK YYLDDADIEA MQAIDMPSER
AIQDYRSTYN DTRDWLRRDK EGQDKDKSTV DWDDVVFEID LLKSQEINLD YILELIFDHN
KKNKSKEGLI EEVRRMIRGS LGNRAKESLV VDFINQTNLD EINDKASIID AFFKFAQAEQ
KREADAIIAS EKLNIDAAKR YIASSLKREY ASENGTALNE ALPKLSPLNP QYRTQKQTVF
QKIAAFVEKF KGVGGQL
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