| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3013 |
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| Symbol | |
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| ID | 4693804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Verminephrobacter eiseniae EF01-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008786 |
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| Strand | + |
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| Start bp | 3360938 |
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| End bp | 3364150 |
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| Gene Length | 3213 bp |
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| Protein Length | 1070 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639850771 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_997764 |
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| Protein GI | 121609957 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.36517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTTT TATCTGAAGC CGCTATTGAG CTGGCACTGC TAGAGCAATT GCGGGGGCTG
GGCTACCGCA TCGAGCAGGA AAAAGATATC GGCCCCGATG GTCCGCGTCC GGAACGCGAA
AGCCACGATG AGGTCGTGCT CAAAAAGCGC TTCGCGGATG CTGTGGCGCG GCTCAATCCT
GGCCTGCCGC TGGAGGCGCG GCAGGTTGCC ATGCGCCGGC TGATGCAGTC GGAGTTGCCA
ACGCTGCTCG AAGAAAACCG CCGCCTGCAC AAACTGATGA CCGATGGGGT GGAGGTCGAG
TACTACGCCG AGGATGGCAC GCTGACCACG GGCACGGTCG CGCTCATTGA CTTCAAGCGG
CCAGAGCAGA ACGATTGGCT GGCGGTCAGT CAATTCGTCG TGATTGCCGG GCAATATCAG
CGCCGCCCGG ATGTGGTGGT GTTTGTGAAT GGCCTGCCGC TGGTGGTGAT CGAGTTGAAG
GCGCTAGGCA ATGCGACTTT GCTCGCGGCC TTCCAGCAGT TGCAGAACTA TAAGCAGCAG
ATTGCGGCAT TGTTCAATAC CAATGCGCTG CTGGTGACTT CGGATGGTGT CCATGCCCGT
GTTGGTTCGC TGTCTGCCGA TCAGGAGCGC TTTATGCCTT GGCGCACCAC GGATGGCACG
GCGATTACGC CAAAGGGCAA ACCGGAGTTG CCAACCTTGA TCGAGGGCGT GTTTGCGCAT
CGCCGCCTGC TCGACCTGTT GCGCCACTTT ACGGTGTTTG ATGAAACGGG TTCAGGCTTG
GTCAAGATTA TTGCTGGCTA TCATCAGTTC CACGCCGTCA TGCGTGCGGT CGATTCAACC
TTGCGCGCAT CGAGCCAATG GCAGGGGGTG CAAGAAGACC CACGCGATTA CGGCTGGTCC
AGTGTCAAAA CCCAGGCCAA AGGTGACAGA AGGGCCGGCG TGATCTGGCA TACCCAAGGC
TCAGGCAAAA GCCTGTTGAT GGTGTTCTAC GCCAGGCAAC TGGCACAGCA TGTGGCCATG
GCGAATCCAA CCCTGGTCGT GCTGACCGAC CGCAACGACC TTGACGATCA ACTTTTTGCC
ACTTTCTCCA GGTGCCGCGA TTTCATTCGG CAAACACCGG TGCAGGCCAA CAGCCGGGAG
GATTTGCAAA AACTGTTGAT GCGCGCATCC GGCGGTGTGA TTTTTACCAC CTTGCAAAAG
TTTGCCGAGT CAAGTCAGCC GCTGACCGAG CGTCACAATG TGGTGGTGAT TGCTGATGAG
GCGCACCGCA GCCAATATGG TTTTCGCGCC AAACTCGATG CCAGGACGGG CGGGGTTTCC
TACGGCTTCG CCAAATACCT GCGCGATGCC CTGCCTCATG CCTCATTCAT CGGCTTTACC
GGCACGCCGA TCGAAGCCAG TGGTGTGAAC ACCCGGGCGG TGTTTGGCAA TTACATCGAT
ATCTATGACA TCAGCCGTGC CGTCGAGGAT GGCGCGACGG TGCTCATCTA TTATGAATCA
CGGCTTGCGC GCATCGAACT CGATGGGGAT GAGAGGCACA AAATCGATGC CGAAGTGGAT
GCGATGATCG AGGACGACTC CGAAGCCGAA CAAGAGCGCT TCAAGAAAGA ATGGTCAACC
GTGGAAGCCC TGGTGGGCAG CGATAAACGC CTCGCGCTGA TTGCGCAAGA CATGGTGACG
CACTTCGAAG CGCGCATGGC CGCACTGGAT GGCAAGGCAA TGGCGGTGTG CATGAGTCGC
CATGTCTGCG TGAGACTGTA CGAGGAAATC GTGAAACTGC GCCCCGGCTG GCACAGCGCC
GACGACAAGG CGGGCGCGCT CAAAATCGTG ATGACGGGTG CCGCCAGCGA CCCCGCAGAA
TGGCAACAGC ATGTCGGTAA CAAGGCGCGC CGCGATGTGC TGGCCAAGCG CGCTCGCGAC
ATCAGGGACC CGCTCAAACT GGTGATTGTG TGCGATATGT GGCTCACCGG TTTTGATGCG
CCCTGCATGC ACACGATGTA TGTGGACAAG CCCATGCAAG GGCATGGCCT GATGCAGGCG
ATTGCGCGGG TCAATCGCGT GTTCCGCGAC AAACCCGCCG GATTGATCGT GGACTATATC
GGCATCGCCC ATTATCTTAA ATCGGCGCTG CGACAATACT CGAAAAGCGA CCGGAAAAAT
ACCGGTATCG ATGAATCCAA GGCCGTCGCG ATGATGATGG AGAAGTACGA AATCGTGCGC
AACATGTACC ACGGTTTCGA TTACACGTTG GATGGAACAG CGCAAGAACG CCTGGTCATG
ATGGCCGGCG CCATCGAGTG GATTCTCGAC ATGCAGCAAA AATCGGCGGC CAGGGAGAGC
AGCCGGGAAG GCAAGAAGAC TGCGCATCGC CGCTATCAGG ATGCAGTGCT GGCGCTGTCC
AAGGCTTTTT CCCTGGTGTC TGCTTCTGAC GAAGCGCGCA CCATTCGGGA AGAAGTCGGC
TTTTTCCAGG CGATTCGCGA TGCACTGGTG AAAAGCAGTG GCGCAATGGG CGTGATGGGG
CAAGAACGCG AATTGGCCAT TCGGCAAATC GTGAGCCGCG CGGTGATTTC TACCGAAATC
GTCGACATTC TGGCCGCAGT CGGCATCAAG AGCCCGGATA TTTCCATCCT GTCCGACCAA
TTTCTGACCG AAATCGCGCA GATGGAGCGC AAGAATCTCG CGCTGGAGGC CTTGCGCAAG
TTGATCAATG ACGACATCCG TTCACGCAGC AAAGCCAACG TGGTGCAAAG CAAAGCCTTC
TCGGAACGGC TGGAAGAGGC CATGGCGCGC TACCACGCCA ATGCCATCAC GACCGCCGAA
GTGCTGCAAG AGTTGATCAC CCTGGCCAAG GACATTCGCG CCGAGCGCCA GCGCGGGGAA
GAGTCCGGTT TGTCGGATGA GGAGATTGCT TTCTATGACG CGTTAGCCGA AAACGATAGC
GCGCTGCAGA TGATGGGCGA TGACAAACTG CGGCTGATTG CCCACGAATT GCTGGTCAGC
CTGCGCAACA ACATATCGGT GGATTGGGCG CACCGCGAAT CCGCCCGCGC GCAAATGCGC
ATGCTGGTCA AGCGCATTCT GCGCAAATAT GGCTATCCGC CGGATTTGCA GGACGAGGCC
GTGCGAACGG TATTGCGACA GGCTGAGGTG TCGATCAGGA GCATGTCCGG CAATGCGCTC
GATGAAAATC TGAAGGGCTT CCGCCTGAAA TAA
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| Protein sequence | MAFLSEAAIE LALLEQLRGL GYRIEQEKDI GPDGPRPERE SHDEVVLKKR FADAVARLNP
GLPLEARQVA MRRLMQSELP TLLEENRRLH KLMTDGVEVE YYAEDGTLTT GTVALIDFKR
PEQNDWLAVS QFVVIAGQYQ RRPDVVVFVN GLPLVVIELK ALGNATLLAA FQQLQNYKQQ
IAALFNTNAL LVTSDGVHAR VGSLSADQER FMPWRTTDGT AITPKGKPEL PTLIEGVFAH
RRLLDLLRHF TVFDETGSGL VKIIAGYHQF HAVMRAVDST LRASSQWQGV QEDPRDYGWS
SVKTQAKGDR RAGVIWHTQG SGKSLLMVFY ARQLAQHVAM ANPTLVVLTD RNDLDDQLFA
TFSRCRDFIR QTPVQANSRE DLQKLLMRAS GGVIFTTLQK FAESSQPLTE RHNVVVIADE
AHRSQYGFRA KLDARTGGVS YGFAKYLRDA LPHASFIGFT GTPIEASGVN TRAVFGNYID
IYDISRAVED GATVLIYYES RLARIELDGD ERHKIDAEVD AMIEDDSEAE QERFKKEWST
VEALVGSDKR LALIAQDMVT HFEARMAALD GKAMAVCMSR HVCVRLYEEI VKLRPGWHSA
DDKAGALKIV MTGAASDPAE WQQHVGNKAR RDVLAKRARD IRDPLKLVIV CDMWLTGFDA
PCMHTMYVDK PMQGHGLMQA IARVNRVFRD KPAGLIVDYI GIAHYLKSAL RQYSKSDRKN
TGIDESKAVA MMMEKYEIVR NMYHGFDYTL DGTAQERLVM MAGAIEWILD MQQKSAARES
SREGKKTAHR RYQDAVLALS KAFSLVSASD EARTIREEVG FFQAIRDALV KSSGAMGVMG
QERELAIRQI VSRAVISTEI VDILAAVGIK SPDISILSDQ FLTEIAQMER KNLALEALRK
LINDDIRSRS KANVVQSKAF SERLEEAMAR YHANAITTAE VLQELITLAK DIRAERQRGE
ESGLSDEEIA FYDALAENDS ALQMMGDDKL RLIAHELLVS LRNNISVDWA HRESARAQMR
MLVKRILRKY GYPPDLQDEA VRTVLRQAEV SIRSMSGNAL DENLKGFRLK
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