| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4782 |
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| Symbol | |
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| ID | 4685973 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008761 |
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| Strand | + |
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| Start bp | 19345 |
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| End bp | 22434 |
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| Gene Length | 3090 bp |
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| Protein Length | 1029 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639826771 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_973933 |
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| Protein GI | 121583507 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 140 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAG ACCAACTCGA ACAAGAAACC CTGGCCTGGC TTCAGGACGT GGGCTACACC
TGCCACTGCG GCTACGACAT CGCGCCTGAC GGTCCTGCGC CCGAGCGCAG CAGTTTCAGC
CAGGCGCTGC TGCCCTTCCG GCTGCGCGAG GCCATCCACA AGCTCAATCC CGGCATCCCG
ACCCCTGCCC GCGAAGACGC CTTCAAGCAG GTTCTTGACT TGGGCATCCC GGCGCTGCTG
AGCGCCAACC GGCATTTCCA CAAGCTGCTG GTGGGCGGCG TGCCCGTGGA GTACCAGAAA
GACGGCCAGA CCCGGGGCGA CTTCGTGCGC CTGATCGACT GGGCGCAGCC GGCGCGCAAC
GAGTTTCTGG CGGTCAACCA GTTTTCCCTC AAAGGTGCGC ACCACACGCG CCGCCCCGAC
ATCATCCTGT TCGTCAACGG CCTGCCCTTG GTGCTGCTCG AACTCAAGAA TCCCGCCGAC
CTCAACGCCA ATGTGTGGAA AGCCTACGAC CAGATCCAGA CCTACAAGGC GCAGATCCCG
GGCGTGTTCG AGTACAACGA AGTGCTGGTG ATTTCGGACG GCACCGAGGC GCTGCTGGGG
TCCTTGTCTA GCAGCAGCGA GCGCTTCATG GCCTGGCGCA CGATTGACGG CCAGGCGCTG
GACCCGCTGG GCCAATTCAA CGAGCTGCAG ACCCTGGTGC GCGGCGTGCT GGCCCCGGCG
TACCTGCTGG ACTACCTGCG CTACTTCGTG CTGTTCGAGG ACGACGGCCA GCTGGCCAAG
AAAATCGCCG GCTACCACCA GTTCCATGCG GTCCGCTCGG CCATTACCCA GGTCGTGACC
GCCTCTCGCC CCGGCGGCAC CCACAAGGGC GGCGTGGTCT GGCACACCCA GGGCAGTGGC
AAGAGCATCA CCATGACCTG CTTTGCTGCT CGCGTGATGC AGGAGCCGGC GATGGAGAAC
CCCACCATCG TGGTGATTAC CGACCGCAAC GACCTGGACG GCCAGCTCTT TGGCGTGTTC
AGCCTGGCCC AGGATCTGCT GCGCGAGCAG CCGGTGCAGG TCAGCACGCG GCAGGATCTG
CGGACCAGGC TGGCGAACCG GCCCTCGGGC GGCATCGTGT TCGCCACCAT CCAGAAATTC
ATGCCGGGCG AGGATGAGGA CACCTTCCCT ACCCTGTCCG AGCGCCACAA CATCGTGGTG
ATTGCCGACG AGGCGCACCG CACCCAGTAC GGCTTCGAGG CCAAGCTCAA GGGCAAGCCC
GGACACGAGA CCTACCAGGT CGGCTACGCC CAGCACCTGC GCGACGCGCT GCCCAACGCC
ACCTTCGTGG CCTTCACCGG CACCCCGGTC AGCAGTGAAG ATCGCGACAC GCGCGCCGTG
TTCGGCGACT ACATCTCGGT CTATGACATG CAGCAGGCCA AGGAGGACGG CGCCACGGTC
GCCATCTACT ACGAGTCGCG CCTGGCCAAG TTGAAGCTCA AGGAAGAAGA TTTTTCGCTG
ATCGACGAGG AGGTCGATGA GCTGGCCGAA GACGAGGAGG AAAGCACCCA GGCCAAGCTC
AAAAGCCGCT GGGCTGCCCT GGAGAAGGTG GTCGGCGCTG AACCGCGCGT GGCCAGCGTG
GCGGCCGACC TCGTGGCGCA TTTCGAGGAG CGCAACAAGG CCCAGAGCGG CAAGGCCATG
ACGGTGGCCA TGAGCCGCGA CATCTGCGTG CATCTGTACA ACGAGATCGT CAAGCTGCGC
CCGGACTGGC ACGACCCGGA TCCAGAAAAG GGCGCCATCA AGATCGTGAT GACCGGGTCC
AGCAGCGACA AGGCGCTGCT GCGCCCGCAC ATCTACAGCG CCCAGGTCAA GAAACGCCTG
GAAAAGCGCT TCAAGGATCC GGCCGACCCG CTGCGCCTGG TCATCGTGCG CGACATGTGG
CTCACCGGCT TTGACGCGCC GTGCGTGCAT ACCCTCTACG TGGACAAGCC CATGAAGGGC
CACAACCTGA TGCAGGCGAT TGCCCGGGTC AACCGCGTGT TCAAGGACAA GCAGGGCGGC
CTGGTGGTGG ACTACATCGG CATCGGCAAT GAACTCAAAG CCGCCATGAA GGAATACACC
CAGAGCAAAG GCCGGGGTCG GCCCACGGTG GACGCGCATG AAGCGTATAG CGTGCTGGCC
GAAAAACTCG ACATCCTGCA AACGATGCTG CACGGCTACG ACTACAGCGG TTTTCTGACC
GGCGGCCACA AGGCGCTGGC CGGCGCCGCC AACCATGTGC TGGGCGCCCA GGACGGCAAG
AAGCGCTTTG CCGACACGGC CCTACAGATG AGCAAGGCGT TCAGCCTGTG CTGCACGCTG
GACGAGGCCA AGGCGGTGCG CGAGGAGGTG GCCTTTTTGC AGGGCGTCAA GGTCATCCTG
ACCAAAAAGG ATTTGAGCGC GCAAAAGAAG ACCGACGAGC AGCGCGACCT GGCCATCCGG
CAGATCATCA ACTCGGCCGT GGTGTCGGAC AGCGTGGTGG ACATTTTCGA TGCCGTCGGG
CTGGACAAGC CCAACATCGG ACTGCTGTCC GACGAGTTCC TGGCGCAGGT GAAAAACCTG
CCGGAGAAGA ACCTGGCGGT GGAATTGCTG GAGCGGCTGC TGGAGGGCGA GATCAAGAGC
CGGTTTGCCA GCAACGTGGT GCAGGAGAAG AAGTTTTCCG AGCTGCTTGC CGGTGTCATC
AAGCGCTACC AGAATCGCTC CATCGAGACC GCCCAGGTCA TGGAGGAGCT GGTGGCGATG
GCCAGGAAGT TTCAGGAGGC GGCCAACCGA GGCGAAGCAC TGGGCCTCAC CGAGGACGAG
ATCAAGTTTT ATGACGCGCT GGCCACCAAC GAATCGGCCG TGCGGGAACT GACCGATGAA
ACCCTCAAGA AGATCGCCCA TGAGCTGACC GAGAACCTGC GCCAAAACCT CAGCGTGGAC
TGGTCGGAGC GCGAGAGCGT GCGCGCCAGG CTGCGCCTGA TGGTCAGGCG CATCCTGCGC
AAATACAAGT ACCCGCCCGA CCTGCAGGAT GCGGCGGTGG AACTGGTGCT GCAGCAGGCG
CAGGCGCTAG GAACCGTATG GATGATCTAG
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| Protein sequence | MTEDQLEQET LAWLQDVGYT CHCGYDIAPD GPAPERSSFS QALLPFRLRE AIHKLNPGIP
TPAREDAFKQ VLDLGIPALL SANRHFHKLL VGGVPVEYQK DGQTRGDFVR LIDWAQPARN
EFLAVNQFSL KGAHHTRRPD IILFVNGLPL VLLELKNPAD LNANVWKAYD QIQTYKAQIP
GVFEYNEVLV ISDGTEALLG SLSSSSERFM AWRTIDGQAL DPLGQFNELQ TLVRGVLAPA
YLLDYLRYFV LFEDDGQLAK KIAGYHQFHA VRSAITQVVT ASRPGGTHKG GVVWHTQGSG
KSITMTCFAA RVMQEPAMEN PTIVVITDRN DLDGQLFGVF SLAQDLLREQ PVQVSTRQDL
RTRLANRPSG GIVFATIQKF MPGEDEDTFP TLSERHNIVV IADEAHRTQY GFEAKLKGKP
GHETYQVGYA QHLRDALPNA TFVAFTGTPV SSEDRDTRAV FGDYISVYDM QQAKEDGATV
AIYYESRLAK LKLKEEDFSL IDEEVDELAE DEEESTQAKL KSRWAALEKV VGAEPRVASV
AADLVAHFEE RNKAQSGKAM TVAMSRDICV HLYNEIVKLR PDWHDPDPEK GAIKIVMTGS
SSDKALLRPH IYSAQVKKRL EKRFKDPADP LRLVIVRDMW LTGFDAPCVH TLYVDKPMKG
HNLMQAIARV NRVFKDKQGG LVVDYIGIGN ELKAAMKEYT QSKGRGRPTV DAHEAYSVLA
EKLDILQTML HGYDYSGFLT GGHKALAGAA NHVLGAQDGK KRFADTALQM SKAFSLCCTL
DEAKAVREEV AFLQGVKVIL TKKDLSAQKK TDEQRDLAIR QIINSAVVSD SVVDIFDAVG
LDKPNIGLLS DEFLAQVKNL PEKNLAVELL ERLLEGEIKS RFASNVVQEK KFSELLAGVI
KRYQNRSIET AQVMEELVAM ARKFQEAANR GEALGLTEDE IKFYDALATN ESAVRELTDE
TLKKIAHELT ENLRQNLSVD WSERESVRAR LRLMVRRILR KYKYPPDLQD AAVELVLQQA
QALGTVWMI
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