| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1217 |
|---|
| Symbol | |
|---|
| ID | 9137910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 1555859 |
|---|
| End bp | 1559056 |
|---|
| Gene Length | 3198 bp |
|---|
| Protein Length | 1065 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | type I site-specific deoxyribonuclease, HsdR family |
|---|
| Protein accession | YP_003629251 |
|---|
| Protein GI | 296121473 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAATC CTTACACTGA AGATGCACTG GTTGAACAGC CCACGATAGC CCTGTTTCAG
GAACTGGGTT ATGCCACGGT GAATGGCTTT GCCGAGAAAG TGGGAGCCAA CGCCACGCTG
GGACGGGAAA CCACCAGTGA TGTGATTCTC TGGCCCCGGC TGAAATCTGC ATTAGAGAAA
CTGAATCCCA GCCTGCCGGA TGATGCCGTT CAACTGGCTA TTGAGGAACT GGGAAAAGAC
CGCAGTGCCG CCGCTCCTGC TCAGGCCAAC CGAGACGTTT ACAAACTCCT CAAGGAGGGC
GTGAAAGTCT CTTATGCCGA TGAGAATGGA GACGATGTGG ATGAAACCGT GCGGGTGATC
GATTGGAATC AGCCCGCCAA CAACGATTTT CTGCTGGTCT CTCAGTTCTG GATTTCGGGA
ACAGTTTACA AACGACGGAC AGACCTGATC GGCTTTGTGA ATGGCCTGCC ACTACTTTTC
ATTGAGTTAA AGAAGACTCA CGGCAGGCTG GAGCAGGCCT TTTCAGGCAA CCTTCAAGAC
TACAAAACCA CCATTCCTCA GCTCTTCTGG TACAACGCTC TGGTGATCCT CTCCAACGGG
AGTGAAGCCA AGATTGGCAG TCTGACGGCA GGGTTGGAGC ATTTTGCCGA TTGGAAAAGG
ATCAACAGTG AAGGAGAGAA AGGGATTATC TCTCTGGAAA CATTGATTCG GGGAACGTGT
GAGAAAACGA AGTTTCTGGA TCTCGTGGAG AACTTCACCC TCTTTGATGA GTCGAAAGGT
CAGCTCTATA AGATTACTGC CAAGAATCAT CAGTTTCTGG GAGTGAATAA TGCCACATCA
GCTCTCAACC AGATTCAATC CAATCAAGGA CGGTTAGGGG TTTTCTGGCA CACTCAGGGA
AGCGGCAAAT CGTATTCCAT GGCTTTCTTT GCGCAGAAAG TCCTTCGGAA AGTTCCCGGC
AACTGGACGT TTCTGGTCAT TACCGACCGC ACGGAACTGG ATGGCCAGAT TTACCGCAAC
TTCCGCAATA CGGGAGTGGC CACTGAAGAG TGTCAGGCCC AGAGTGGAGA ACATCTGAAG
CAACTTCTTC AGGAAGATCA CCGGTTTATC TTCACCCTGA TTCAAAAGTT CGGCACCAAG
AAAGGTCAGA CGTACCCGAA ACTTTCCGAC CGCAGCAACA TCATCGTCAT GACTGATGAG
GCTCACCGCT CCCAATATGA CACGTTGGCT TTGAATATGC GGAACGCCTT GCCGAATGCG
GCGTTTATCG GGTTCACCGG AACTCCGCTG ATGGCTGGTG AGGAGAAGAC CAAAGAAGTC
TTTGGGGATT ATGTTTCCAT CTATAACTTC CGCCAGTCCG TGGAGGATGG TGCCACTGTC
CGGTTGTTTT ACGAAAACCG GATTCCCGAA CTGCAACTGG CCAATGAAAA CTTCCAGGAC
GATCTGGACG CTCTGATTGA ATCGGCTGAA CTCAATGAAG AGCAGGAAGA TTTGCTGGAA
CGGGAATTTG CCCGTGAATA TCACCTGATT ACCCGAGACG ACCGCCTGGA AAAAGTGGCG
GAAGACATTG TGGCCCATTT TCTGGGACGT GAGGGTGGCG GCAAGGGAAT GGTGATCTGT
GTCGATAAGC TCACCGCAGT GAAGATGTAT GAGAAAGTCC AGAAATACTG GGGTGCGTTT
CTGGCAGATC TGAAGTCTCA ATTGCTGGTG GCCGATTCAA TCCGTCAGCC TGTATTACAA
GAGAAAATTG CTTACATGGA ATCCACGGAT ATGGCCGTGG TGATTTCTCA GCAGCAGAAC
GAAATTCAAT ACTTCCAGGA GAAAGGCTTT GATATCACCG TGCATCGGGC ACGCATGGTG
AATGAGGATC TGGAAAAGAA GTTCCGGGAA CCCAAAGACC CTTTCCGTCT GGTTTTTGTC
TGTGCCATGT GGCTGACGGG CTTTGATGCT CCGTGTGTCT CTACGGTTTA CCTGGATAAG
CCGATGAAGA ATCACACACT CATGCAGACG ATTGCCCGAG CCAATCGGGT GTTTGGAGAA
AAAACCAACG GTCTGATTGT GGATTATGTG GGCGTTTTTC GTGACCTGCA AAAAGCATTG
GCCATTTTCG GTACAGCAGC ATCAGGGCAG GCCCAGGAGG GTGAATGCCC GATTGAGAAA
AAGACGATGC TGGTGGAAGC TCTCCACGAA GCCATTGCGG AAGCCAGAGC GTTTTGTGAT
TCACGCGGCG TGAGCTTGGA AAGAGTGATT GACGCCAACC CGGAGAGTTT TCACAAAGCT
GCGGAACTGG CCCAGGCCGC TCATTTGCTG GTGGAAGCCG AAGTGGTGGA AGCCGTGGAT
GATGCTGTTG AAAAAATCAT CCTCAATGAT GACCTGAAGA AGCAGTTTTT GTTTCATGTG
GCCCAGGTGG TGAAGCTTTA CAAAGCCATA TTGCCTGACC CCAGAGCCAA CGAGTTTGCG
GCAATCAAAA CGTGTCTGGT GGTTCTGGCA GAGAAAATCC GCAATCTGAC CGACAAAGCC
AACATTGATG ATTTGCTGGA TCAAGTGGGA GAACTGCTGG ATGAATCTAT TTCCACTGTT
GGCTATGTGA TCCATGCCAC AGAAGAGACT TCATTGATTG ATTTGAGCGA AGTTGATTTT
GAGGCGTTGA AGGCTCATTT CAGTAAAGGC CGGAAACATA CGGAAGCAGA AAAGCTGAAA
GCATTGGTGA GCCAGAAACT CACCAGAATG GTTCAACTCA ACAAATCCCG CATTGAGCTG
TTGGATAAGT TCAAGACGCT GATTGAAGAG TACAACAAAG GAATGGATGT TGAAGCTTTC
TTTGCCAAGC TGATGGCGTT TGCCAAAGAC TTAAAGGAAG AGGATAAGCG GGGTGTATCC
GAGCAACTGA CTGAGGAAGA ACTGGCCATT TTTGATATCC TCATGCGGCC CGAGTTAGAC
CTGACACCAG CCGAGCGGAA GCAAGTAAAG CAGGTGGCGC GTCGGGTACT GCAATCTCTA
AAGCAAGCCA AGTTGGTTCT GGATTGGCGA AAGAAGCAGA GAACGCGAGC CGACGTGTAC
TCCACTGTAA AGGAAGTGCT GGATGATCTT CCGAGGCCAT TCACACCAGA GCTTTACAGC
CAGAAGTGTG ACAATGTCTA CCAGCATGTT TATGACAGCT ATCAGGGAGA AGGATTGAGC
CTGTATTCGA CACTTTGA
|
|---|
| Protein sequence | MINPYTEDAL VEQPTIALFQ ELGYATVNGF AEKVGANATL GRETTSDVIL WPRLKSALEK
LNPSLPDDAV QLAIEELGKD RSAAAPAQAN RDVYKLLKEG VKVSYADENG DDVDETVRVI
DWNQPANNDF LLVSQFWISG TVYKRRTDLI GFVNGLPLLF IELKKTHGRL EQAFSGNLQD
YKTTIPQLFW YNALVILSNG SEAKIGSLTA GLEHFADWKR INSEGEKGII SLETLIRGTC
EKTKFLDLVE NFTLFDESKG QLYKITAKNH QFLGVNNATS ALNQIQSNQG RLGVFWHTQG
SGKSYSMAFF AQKVLRKVPG NWTFLVITDR TELDGQIYRN FRNTGVATEE CQAQSGEHLK
QLLQEDHRFI FTLIQKFGTK KGQTYPKLSD RSNIIVMTDE AHRSQYDTLA LNMRNALPNA
AFIGFTGTPL MAGEEKTKEV FGDYVSIYNF RQSVEDGATV RLFYENRIPE LQLANENFQD
DLDALIESAE LNEEQEDLLE REFAREYHLI TRDDRLEKVA EDIVAHFLGR EGGGKGMVIC
VDKLTAVKMY EKVQKYWGAF LADLKSQLLV ADSIRQPVLQ EKIAYMESTD MAVVISQQQN
EIQYFQEKGF DITVHRARMV NEDLEKKFRE PKDPFRLVFV CAMWLTGFDA PCVSTVYLDK
PMKNHTLMQT IARANRVFGE KTNGLIVDYV GVFRDLQKAL AIFGTAASGQ AQEGECPIEK
KTMLVEALHE AIAEARAFCD SRGVSLERVI DANPESFHKA AELAQAAHLL VEAEVVEAVD
DAVEKIILND DLKKQFLFHV AQVVKLYKAI LPDPRANEFA AIKTCLVVLA EKIRNLTDKA
NIDDLLDQVG ELLDESISTV GYVIHATEET SLIDLSEVDF EALKAHFSKG RKHTEAEKLK
ALVSQKLTRM VQLNKSRIEL LDKFKTLIEE YNKGMDVEAF FAKLMAFAKD LKEEDKRGVS
EQLTEEELAI FDILMRPELD LTPAERKQVK QVARRVLQSL KQAKLVLDWR KKQRTRADVY
STVKEVLDDL PRPFTPELYS QKCDNVYQHV YDSYQGEGLS LYSTL
|
|---|
| |