More than 300 homologs were found in PanDaTox collection
for query gene VIBHAR_06912 on replicon NC_009784
Organism: Vibrio harveyi ATCC BAA-1116



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009784  VIBHAR_06912  transcriptional regulator  100 
 
 
171 aa  352  1e-96  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000908  transcriptional regulator AsnC family  96.03 
 
 
126 aa  254  3e-67  Vibrio sp. Ex25  Bacteria  normal  0.499259  n/a   
 
 
-
 
NC_011313  VSAL_II1042  HTH-type transcriptional regulator, AsnC family  68.49 
 
 
147 aa  214  5e-55  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3163  AsnC family transcriptional regulator  62.76 
 
 
150 aa  193  1e-48  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1361  AsnC family transcriptional regulator  60.26 
 
 
167 aa  189  1e-47  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.658235  normal 
 
 
-
 
NC_009952  Dshi_2477  putative leucine-responsive regulatory protein  58.28 
 
 
154 aa  186  1e-46  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.728563 
 
 
-
 
NC_007802  Jann_2774  AsnC family transcriptional regulator  63.01 
 
 
150 aa  186  2e-46  Jannaschia sp. CCS1  Bacteria  normal  0.315931  normal  0.712036 
 
 
-
 
NC_009457  VC0395_A1316  AsnC family transcriptional regulator  78.9 
 
 
110 aa  184  6e-46  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_0500  AsnC family transcriptional regulator  56.55 
 
 
150 aa  184  6e-46  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3626  AsnC family transcriptional regulator  52.05 
 
 
172 aa  180  7e-45  Paracoccus denitrificans PD1222  Bacteria  decreased coverage  0.00949051  normal 
 
 
-
 
NC_013730  Slin_5348  transcriptional regulator, AsnC family  38.36 
 
 
156 aa  134  5e-31  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_3786  transcriptional regulator, AsnC family  37.16 
 
 
157 aa  130  1.0000000000000001e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.173454  normal 
 
 
-
 
NC_009485  BBta_0023  AsnC family transcriptional regulator  41.1 
 
 
159 aa  125  4.0000000000000003e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.28543  normal  0.347248 
 
 
-
 
NC_008255  CHU_0065  AsnC family transcriptional regulator  35.14 
 
 
155 aa  123  1e-27  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0481565  normal  0.0654338 
 
 
-
 
NC_010338  Caul_3655  AsnC family transcriptional regulator  44.44 
 
 
156 aa  119  1.9999999999999998e-26  Caulobacter sp. K31  Bacteria  normal  normal  0.182716 
 
 
-
 
NC_008543  Bcen2424_4644  AsnC family transcriptional regulator  41.38 
 
 
155 aa  117  6e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  0.52735  normal 
 
 
-
 
NC_008061  Bcen_3724  AsnC family transcriptional regulator  41.38 
 
 
155 aa  117  6e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.201895  n/a   
 
 
-
 
NC_010515  Bcenmc03_5660  AsnC family transcriptional regulator  41.38 
 
 
155 aa  117  7e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1555  regulatory protein AsnC/Lrp family  37.24 
 
 
156 aa  117  7.999999999999999e-26  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.469049 
 
 
-
 
NC_011989  Avi_3332  transcriptional regulator AsnC family  42.36 
 
 
155 aa  117  7.999999999999999e-26  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2299  AsnC family transcriptional regulator  39.16 
 
 
156 aa  117  9.999999999999999e-26  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00073028 
 
 
-
 
NC_012850  Rleg_2536  transcriptional regulator, AsnC family  43.15 
 
 
155 aa  116  9.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.346096  normal 
 
 
-
 
NC_007948  Bpro_0399  AsnC family transcriptional regulator  38.93 
 
 
159 aa  115  3e-25  Polaromonas sp. JS666  Bacteria  normal  normal  0.318604 
 
 
-
 
NC_007794  Saro_1351  AsnC family transcriptional regulator  36.81 
 
 
155 aa  114  6e-25  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.986607  n/a   
 
 
-
 
NC_007802  Jann_3495  AsnC family transcriptional regulator  40.69 
 
 
176 aa  114  6e-25  Jannaschia sp. CCS1  Bacteria  normal  normal  0.0302787 
 
 
-
 
NC_008752  Aave_3320  AsnC family transcriptional regulator  40.56 
 
 
170 aa  114  8.999999999999998e-25  Acidovorax citrulli AAC00-1  Bacteria  hitchhiker  0.0097323  normal 
 
 
-
 
NC_009511  Swit_1115  AsnC family transcriptional regulator  36.24 
 
 
164 aa  113  1.0000000000000001e-24  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.266621 
 
 
-
 
NC_007643  Rru_A3685  AsnC family transcriptional regulator  42.66 
 
 
174 aa  112  2.0000000000000002e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.930939  n/a   
 
 
-
 
NC_009667  Oant_0505  AsnC family transcriptional regulator  38.62 
 
 
181 aa  112  2.0000000000000002e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.287922  n/a   
 
 
-
 
NC_011312  VSAL_I1840  leucine-responsive transcriptional regulator  40 
 
 
163 aa  113  2.0000000000000002e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.757131  n/a   
 
 
-
 
NC_009901  Spea_2234  leucine-responsive transcriptional regulator  39.86 
 
 
167 aa  112  2.0000000000000002e-24  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000872232  n/a   
 
 
-
 
NC_008786  Veis_4443  AsnC family transcriptional regulator  39.29 
 
 
157 aa  112  3e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.270446 
 
 
-
 
NC_008044  TM1040_2738  AsnC family transcriptional regulator  40.97 
 
 
152 aa  112  3e-24  Ruegeria sp. TM1040  Bacteria  normal  0.579335  normal 
 
 
-
 
NC_009831  Ssed_2126  leucine-responsive transcriptional regulator  39.86 
 
 
167 aa  112  3e-24  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000250913  normal  0.0385806 
 
 
-
 
NC_011369  Rleg2_2230  transcriptional regulator, AsnC family  42.66 
 
 
155 aa  111  4.0000000000000004e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.685217  normal 
 
 
-
 
NC_010506  Swoo_2484  leucine-responsive transcriptional regulator  39.86 
 
 
167 aa  111  5e-24  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000151917  unclonable  0.000000015798 
 
 
-
 
NC_009457  VC0395_A1494  leucine-responsive transcriptional regulator  40.27 
 
 
164 aa  111  6e-24  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000000974852  n/a   
 
 
-
 
NC_004347  SO_2305  leucine-responsive transcriptional regulator  37.18 
 
 
168 aa  110  7.000000000000001e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_2049  leucine-responsive transcriptional regulator  37.18 
 
 
168 aa  110  7.000000000000001e-24  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0000202075  hitchhiker  0.00142974 
 
 
-
 
NC_011992  Dtpsy_1428  transcriptional regulator, AsnC family  39.86 
 
 
159 aa  110  7.000000000000001e-24  Acidovorax ebreus TPSY  Bacteria  normal  0.92008  n/a   
 
 
-
 
NC_009665  Shew185_2216  leucine-responsive transcriptional regulator  37.18 
 
 
168 aa  110  7.000000000000001e-24  Shewanella baltica OS185  Bacteria  unclonable  0.0000000000025021  n/a   
 
 
-
 
NC_007778  RPB_1513  AsnC family transcriptional regulator  38.06 
 
 
176 aa  110  7.000000000000001e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.560368 
 
 
-
 
NC_009997  Sbal195_2324  leucine-responsive transcriptional regulator  37.18 
 
 
168 aa  110  7.000000000000001e-24  Shewanella baltica OS195  Bacteria  hitchhiker  0.000000733571  normal 
 
 
-
 
NC_009052  Sbal_2155  leucine-responsive transcriptional regulator  37.18 
 
 
168 aa  110  7.000000000000001e-24  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000000584376  n/a   
 
 
-
 
NC_011663  Sbal223_2190  leucine-responsive transcriptional regulator  37.18 
 
 
168 aa  110  7.000000000000001e-24  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000625254  normal  0.0646213 
 
 
-
 
NC_008321  Shewmr4_1962  leucine-responsive transcriptional regulator  37.18 
 
 
168 aa  110  7.000000000000001e-24  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000351105  normal  0.663498 
 
 
-
 
NC_008322  Shewmr7_2014  leucine-responsive transcriptional regulator  37.18 
 
 
168 aa  110  7.000000000000001e-24  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000513166  normal  0.0218506 
 
 
-
 
NC_009438  Sputcn32_2012  leucine-responsive transcriptional regulator  37.18 
 
 
168 aa  110  7.000000000000001e-24  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000455922  n/a   
 
 
-
 
NC_008782  Ajs_2419  AsnC family transcriptional regulator  39.86 
 
 
159 aa  110  7.000000000000001e-24  Acidovorax sp. JS42  Bacteria  normal  0.370827  normal  0.408785 
 
 
-
 
NC_013456  VEA_003880  leucine-responsive regulatory protein  40.27 
 
 
164 aa  110  8.000000000000001e-24  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00000693258  n/a   
 
 
-
 
NC_008700  Sama_1771  leucine-responsive transcriptional regulator  39.16 
 
 
167 aa  110  8.000000000000001e-24  Shewanella amazonensis SB2B  Bacteria  unclonable  0.0000000022114  normal  0.0203642 
 
 
-
 
NC_007908  Rfer_2022  AsnC family transcriptional regulator  40 
 
 
157 aa  110  9e-24  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0571  transcriptional regulator, AsnC family  40.41 
 
 
154 aa  110  1.0000000000000001e-23  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2025  leucine-responsive transcriptional regulator  39.16 
 
 
167 aa  110  1.0000000000000001e-23  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000839293  unclonable  0.00000134482 
 
 
-
 
NC_009783  VIBHAR_01796  leucine-responsive transcriptional regulator  40.27 
 
 
164 aa  110  1.0000000000000001e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_0193  transcriptional regulator, AsnC family  43.44 
 
 
161 aa  109  1.0000000000000001e-23  Thauera sp. MZ1T  Bacteria  normal  0.740343  n/a   
 
 
-
 
NC_007958  RPD_1454  AsnC family transcriptional regulator  39.58 
 
 
160 aa  110  1.0000000000000001e-23  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1324  AsnC family transcriptional regulator  38.89 
 
 
150 aa  110  1.0000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  0.719808  n/a   
 
 
-
 
NC_008709  Ping_3606  transcriptional regulator of AsnC/Lrp family protein  39.86 
 
 
155 aa  109  2.0000000000000002e-23  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0655  AsnC family transcriptional regulator  41.1 
 
 
196 aa  109  2.0000000000000002e-23  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2327  AsnC family transcriptional regulator  41.1 
 
 
151 aa  109  2.0000000000000002e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0714715  normal 
 
 
-
 
NC_012791  Vapar_5122  transcriptional regulator, AsnC family  41.18 
 
 
158 aa  108  3e-23  Variovorax paradoxus S110  Bacteria  normal  0.499071  n/a   
 
 
-
 
NC_012850  Rleg_1509  transcriptional regulator, AsnC family  40.56 
 
 
159 aa  108  3e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.0071225  normal  0.53352 
 
 
-
 
NC_008825  Mpe_A3749  AsnC family transcriptional regulator  36.81 
 
 
181 aa  108  3e-23  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.648242 
 
 
-
 
NC_008345  Sfri_1794  leucine-responsive transcriptional regulator  38.46 
 
 
165 aa  108  3e-23  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000016537  n/a   
 
 
-
 
CP001509  ECD_00893  DNA-binding transcriptional dual regulator, leucine-binding  40 
 
 
164 aa  108  4.0000000000000004e-23  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2754  transcriptional regulator, AsnC family  40 
 
 
164 aa  108  4.0000000000000004e-23  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000328569  n/a   
 
 
-
 
NC_010468  EcolC_2707  leucine-responsive transcriptional regulator  40 
 
 
164 aa  108  4.0000000000000004e-23  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.0000640359  normal 
 
 
-
 
NC_009801  EcE24377A_0964  leucine-responsive transcriptional regulator  40 
 
 
164 aa  108  4.0000000000000004e-23  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000271902  n/a   
 
 
-
 
NC_009436  Ent638_1413  leucine-responsive transcriptional regulator  40 
 
 
164 aa  108  4.0000000000000004e-23  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000135875  normal 
 
 
-
 
NC_010498  EcSMS35_2231  leucine-responsive transcriptional regulator  40 
 
 
164 aa  108  4.0000000000000004e-23  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000028804  normal 
 
 
-
 
NC_004311  BRA0723  proline dehydrogenase transcriptional activator  38.36 
 
 
164 aa  108  4.0000000000000004e-23  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2597  leucine-responsive transcriptional regulator  40.56 
 
 
164 aa  108  4.0000000000000004e-23  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000282665  n/a   
 
 
-
 
NC_009800  EcHS_A0994  leucine-responsive transcriptional regulator  40 
 
 
164 aa  108  4.0000000000000004e-23  Escherichia coli HS  Bacteria  decreased coverage  0.0000000000000266294  n/a   
 
 
-
 
NC_009636  Smed_2574  AsnC family transcriptional regulator  35.17 
 
 
154 aa  108  4.0000000000000004e-23  Sinorhizobium medicae WSM419  Bacteria  normal  0.0518335  normal  0.327443 
 
 
-
 
NC_012892  B21_00900  hypothetical protein  40 
 
 
164 aa  108  4.0000000000000004e-23  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1051  leucine-responsive transcriptional regulator  40 
 
 
164 aa  108  4.0000000000000004e-23  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0000229844  normal 
 
 
-
 
NC_010658  SbBS512_E2439  leucine-responsive transcriptional regulator  40 
 
 
164 aa  108  4.0000000000000004e-23  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000889772  n/a   
 
 
-
 
NC_007954  Sden_1742  leucine-responsive transcriptional regulator  37.66 
 
 
166 aa  108  4.0000000000000004e-23  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000000110042  n/a   
 
 
-
 
NC_010159  YpAngola_A1612  leucine-responsive transcriptional regulator  40.56 
 
 
164 aa  108  4.0000000000000004e-23  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000163573  normal 
 
 
-
 
NC_010676  Bphyt_5902  transcriptional regulator, AsnC family  40.41 
 
 
163 aa  108  4.0000000000000004e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2686  leucine-responsive transcriptional regulator  40.56 
 
 
164 aa  108  4.0000000000000004e-23  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.247423  n/a   
 
 
-
 
NC_013421  Pecwa_1986  leucine-responsive transcriptional regulator  40 
 
 
164 aa  108  5e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  0.64528  n/a   
 
 
-
 
NC_007493  RSP_2165  AsnC family transcriptional regulator  39.6 
 
 
151 aa  108  5e-23  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.653585  n/a   
 
 
-
 
NC_009049  Rsph17029_0837  AsnC family transcriptional regulator  39.07 
 
 
158 aa  108  5e-23  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0388954  normal 
 
 
-
 
NC_010681  Bphyt_3670  transcriptional regulator, AsnC family  41.48 
 
 
165 aa  108  5e-23  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0025682  hitchhiker  0.0000000562652 
 
 
-
 
NC_011083  SeHA_C1058  leucine-responsive transcriptional regulator  40 
 
 
164 aa  107  6e-23  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  decreased coverage  0.000658641  normal 
 
 
-
 
NC_011094  SeSA_A1073  leucine-responsive transcriptional regulator  40 
 
 
164 aa  107  6e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000166195  normal 
 
 
-
 
NC_011205  SeD_A1024  leucine-responsive transcriptional regulator  40 
 
 
164 aa  107  6e-23  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  unclonable  0.00000719526  normal 
 
 
-
 
NC_011080  SNSL254_A0993  leucine-responsive transcriptional regulator  40 
 
 
164 aa  107  6e-23  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000182939  normal 
 
 
-
 
NC_011149  SeAg_B0964  leucine-responsive transcriptional regulator  40 
 
 
164 aa  107  6e-23  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000000000969196  n/a   
 
 
-
 
NC_012912  Dd1591_2361  leucine-responsive transcriptional regulator  40 
 
 
164 aa  107  7.000000000000001e-23  Dickeya zeae Ech1591  Bacteria  normal  0.84534  n/a   
 
 
-
 
NC_009832  Spro_1682  leucine-responsive transcriptional regulator  39.86 
 
 
164 aa  107  7.000000000000001e-23  Serratia proteamaculans 568  Bacteria  normal  0.94162  normal  0.324618 
 
 
-
 
NC_012880  Dd703_2261  leucine-responsive transcriptional regulator  40 
 
 
164 aa  107  7.000000000000001e-23  Dickeya dadantii Ech703  Bacteria  normal  0.0124412  n/a   
 
 
-
 
NC_012917  PC1_1718  leucine-responsive transcriptional regulator  40 
 
 
164 aa  107  7.000000000000001e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159084  n/a   
 
 
-
 
NC_008228  Patl_1480  AsnC family transcriptional regulator  36.36 
 
 
153 aa  107  7.000000000000001e-23  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3904  AsnC family transcriptional regulator  42.22 
 
 
186 aa  107  7.000000000000001e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0974584 
 
 
-
 
NC_008825  Mpe_A2116  AsnC family transcriptional regulator  38.19 
 
 
156 aa  107  8.000000000000001e-23  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.0323344 
 
 
-
 
NC_010551  BamMC406_2495  AsnC family transcriptional regulator  40.14 
 
 
166 aa  107  9.000000000000001e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0775617  normal  0.732108 
 
 
-
 
NC_008390  Bamb_2624  AsnC family transcriptional regulator  40.14 
 
 
166 aa  107  9.000000000000001e-23  Burkholderia ambifaria AMMD  Bacteria  normal  0.30758  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>