More than 300 homologs were found in PanDaTox collection
for query gene TM1040_3163 on replicon NC_008043
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008043  TM1040_3163  AsnC family transcriptional regulator  100 
 
 
150 aa  309  7.999999999999999e-84  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2774  AsnC family transcriptional regulator  72.67 
 
 
150 aa  223  5.0000000000000005e-58  Jannaschia sp. CCS1  Bacteria  normal  0.315931  normal  0.712036 
 
 
-
 
NC_009952  Dshi_2477  putative leucine-responsive regulatory protein  69.33 
 
 
154 aa  223  7e-58  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.728563 
 
 
-
 
NC_008048  Sala_1361  AsnC family transcriptional regulator  70.67 
 
 
167 aa  221  3e-57  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.658235  normal 
 
 
-
 
NC_008228  Patl_0500  AsnC family transcriptional regulator  65.1 
 
 
150 aa  211  3.9999999999999995e-54  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3626  AsnC family transcriptional regulator  61.64 
 
 
172 aa  194  5.000000000000001e-49  Paracoccus denitrificans PD1222  Bacteria  decreased coverage  0.00949051  normal 
 
 
-
 
NC_009784  VIBHAR_06912  transcriptional regulator  62.76 
 
 
171 aa  193  8.000000000000001e-49  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011313  VSAL_II1042  HTH-type transcriptional regulator, AsnC family  55.48 
 
 
147 aa  178  2e-44  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000908  transcriptional regulator AsnC family  62.7 
 
 
126 aa  168  2e-41  Vibrio sp. Ex25  Bacteria  normal  0.499259  n/a   
 
 
-
 
NC_009457  VC0395_A1316  AsnC family transcriptional regulator  57.8 
 
 
110 aa  140  7e-33  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0023  AsnC family transcriptional regulator  45.52 
 
 
159 aa  135  3.0000000000000003e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.28543  normal  0.347248 
 
 
-
 
NC_009667  Oant_0505  AsnC family transcriptional regulator  42.47 
 
 
181 aa  127  4.0000000000000003e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.287922  n/a   
 
 
-
 
NC_007912  Sde_2299  AsnC family transcriptional regulator  44.37 
 
 
156 aa  127  5.0000000000000004e-29  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00073028 
 
 
-
 
NC_014210  Ndas_3737  transcriptional regulator, AsnC family  46.38 
 
 
150 aa  127  5.0000000000000004e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.659957  normal 
 
 
-
 
NC_008463  PA14_58510  AsnC family transcriptional regulator  42.36 
 
 
157 aa  127  7.000000000000001e-29  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5122  putative transcriptional regulator  42.36 
 
 
157 aa  127  7.000000000000001e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5672  AsnC family transcriptional regulator  43.75 
 
 
157 aa  125  2.0000000000000002e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_3606  transcriptional regulator of AsnC/Lrp family protein  41.78 
 
 
155 aa  124  3e-28  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3655  AsnC family transcriptional regulator  42.57 
 
 
156 aa  123  7e-28  Caulobacter sp. K31  Bacteria  normal  normal  0.182716 
 
 
-
 
NC_007778  RPB_0449  AsnC family transcriptional regulator  44.37 
 
 
156 aa  123  8.000000000000001e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.937702 
 
 
-
 
NC_009428  Rsph17025_2327  AsnC family transcriptional regulator  44.83 
 
 
151 aa  123  8.000000000000001e-28  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0714715  normal 
 
 
-
 
NC_007794  Saro_1351  AsnC family transcriptional regulator  41.1 
 
 
155 aa  123  1e-27  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.986607  n/a   
 
 
-
 
NC_010552  BamMC406_3278  AsnC family transcriptional regulator  45.14 
 
 
152 aa  122  1e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.882377 
 
 
-
 
NC_003296  RS02081  transcription regulator protein  45.77 
 
 
152 aa  122  2e-27  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2165  AsnC family transcriptional regulator  44.14 
 
 
151 aa  122  2e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.653585  n/a   
 
 
-
 
NC_007511  Bcep18194_B2899  AsnC family transcriptional regulator  45.14 
 
 
154 aa  122  2e-27  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0837  AsnC family transcriptional regulator  44.14 
 
 
158 aa  122  2e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0388954  normal 
 
 
-
 
NC_008543  Bcen2424_3357  AsnC family transcriptional regulator  45.14 
 
 
152 aa  122  2e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.773724  normal 
 
 
-
 
NC_010515  Bcenmc03_4159  AsnC family transcriptional regulator  45.14 
 
 
152 aa  122  2e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.409138  normal 
 
 
-
 
NC_008061  Bcen_4810  AsnC family transcriptional regulator  45.14 
 
 
152 aa  122  2e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.402994  n/a   
 
 
-
 
NC_008391  Bamb_5136  AsnC family transcriptional regulator  45.14 
 
 
177 aa  122  2e-27  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.944237 
 
 
-
 
NC_009997  Sbal195_2324  leucine-responsive transcriptional regulator  40.58 
 
 
168 aa  121  3e-27  Shewanella baltica OS195  Bacteria  hitchhiker  0.000000733571  normal 
 
 
-
 
NC_009052  Sbal_2155  leucine-responsive transcriptional regulator  40.58 
 
 
168 aa  121  3e-27  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000000584376  n/a   
 
 
-
 
NC_011663  Sbal223_2190  leucine-responsive transcriptional regulator  40.58 
 
 
168 aa  121  3e-27  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000625254  normal  0.0646213 
 
 
-
 
NC_008700  Sama_1771  leucine-responsive transcriptional regulator  40.58 
 
 
167 aa  121  3e-27  Shewanella amazonensis SB2B  Bacteria  unclonable  0.0000000022114  normal  0.0203642 
 
 
-
 
NC_010086  Bmul_5229  AsnC family transcriptional regulator  45.14 
 
 
152 aa  121  3e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.104749  normal 
 
 
-
 
NC_009665  Shew185_2216  leucine-responsive transcriptional regulator  40.58 
 
 
168 aa  121  3e-27  Shewanella baltica OS185  Bacteria  unclonable  0.0000000000025021  n/a   
 
 
-
 
NC_004347  SO_2305  leucine-responsive transcriptional regulator  40.58 
 
 
168 aa  121  4e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011992  Dtpsy_1428  transcriptional regulator, AsnC family  44.2 
 
 
159 aa  120  4e-27  Acidovorax ebreus TPSY  Bacteria  normal  0.92008  n/a   
 
 
-
 
NC_010506  Swoo_2484  leucine-responsive transcriptional regulator  39.86 
 
 
167 aa  121  4e-27  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000151917  unclonable  0.000000015798 
 
 
-
 
NC_009092  Shew_2025  leucine-responsive transcriptional regulator  40.58 
 
 
167 aa  121  4e-27  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000839293  unclonable  0.00000134482 
 
 
-
 
NC_008577  Shewana3_2049  leucine-responsive transcriptional regulator  40.58 
 
 
168 aa  121  4e-27  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0000202075  hitchhiker  0.00142974 
 
 
-
 
NC_009438  Sputcn32_2012  leucine-responsive transcriptional regulator  40.58 
 
 
168 aa  121  4e-27  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000455922  n/a   
 
 
-
 
NC_008321  Shewmr4_1962  leucine-responsive transcriptional regulator  40.58 
 
 
168 aa  121  4e-27  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000351105  normal  0.663498 
 
 
-
 
NC_008322  Shewmr7_2014  leucine-responsive transcriptional regulator  40.58 
 
 
168 aa  121  4e-27  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000513166  normal  0.0218506 
 
 
-
 
NC_008345  Sfri_1794  leucine-responsive transcriptional regulator  39.13 
 
 
165 aa  121  4e-27  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000016537  n/a   
 
 
-
 
NC_008782  Ajs_2419  AsnC family transcriptional regulator  44.2 
 
 
159 aa  120  4e-27  Acidovorax sp. JS42  Bacteria  normal  0.370827  normal  0.408785 
 
 
-
 
NC_009831  Ssed_2126  leucine-responsive transcriptional regulator  39.86 
 
 
167 aa  120  5e-27  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000250913  normal  0.0385806 
 
 
-
 
NC_007643  Rru_A0655  AsnC family transcriptional regulator  43.92 
 
 
196 aa  120  9e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2234  leucine-responsive transcriptional regulator  39.86 
 
 
167 aa  119  9.999999999999999e-27  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000872232  n/a   
 
 
-
 
NC_009636  Smed_2574  AsnC family transcriptional regulator  40.14 
 
 
154 aa  119  9.999999999999999e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.0518335  normal  0.327443 
 
 
-
 
NC_007488  RSP_3973  AsnC family transcriptional regulator  43.38 
 
 
154 aa  119  9.999999999999999e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.918788  n/a   
 
 
-
 
NC_008786  Veis_4443  AsnC family transcriptional regulator  42.75 
 
 
157 aa  119  1.9999999999999998e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.270446 
 
 
-
 
NC_010524  Lcho_1629  AsnC family transcriptional regulator  40.85 
 
 
159 aa  119  1.9999999999999998e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00470119 
 
 
-
 
NC_009720  Xaut_0213  AsnC family transcriptional regulator  47.2 
 
 
153 aa  119  1.9999999999999998e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.757841 
 
 
-
 
NC_007651  BTH_I0319  transcription regulator AsnC  43.75 
 
 
152 aa  119  1.9999999999999998e-26  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1897  AsnC family transcriptional regulator  42.76 
 
 
163 aa  119  1.9999999999999998e-26  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.129627 
 
 
-
 
NC_012856  Rpic12D_0777  transcriptional regulator, AsnC family  43.84 
 
 
175 aa  118  1.9999999999999998e-26  Ralstonia pickettii 12D  Bacteria  normal  0.079417  normal  0.163575 
 
 
-
 
NC_010682  Rpic_0711  transcriptional regulator, AsnC family  43.84 
 
 
175 aa  118  1.9999999999999998e-26  Ralstonia pickettii 12J  Bacteria  normal  0.12856  normal  0.032532 
 
 
-
 
NC_010322  PputGB1_3168  AsnC family transcriptional regulator  43.75 
 
 
154 aa  119  1.9999999999999998e-26  Pseudomonas putida GB-1  Bacteria  normal  0.714414  normal 
 
 
-
 
NC_008781  Pnap_3888  AsnC family transcriptional regulator  41.1 
 
 
188 aa  118  3e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.330604  normal  0.484921 
 
 
-
 
NC_007643  Rru_A3685  AsnC family transcriptional regulator  44.85 
 
 
174 aa  118  3e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.930939  n/a   
 
 
-
 
NC_008254  Meso_1324  AsnC family transcriptional regulator  39.19 
 
 
150 aa  118  3e-26  Chelativorans sp. BNC1  Bacteria  normal  0.719808  n/a   
 
 
-
 
NC_013421  Pecwa_1986  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  118  3e-26  Pectobacterium wasabiae WPP163  Bacteria  normal  0.64528  n/a   
 
 
-
 
NC_012850  Rleg_2536  transcriptional regulator, AsnC family  45.07 
 
 
155 aa  117  3.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.346096  normal 
 
 
-
 
NC_009457  VC0395_A1494  leucine-responsive transcriptional regulator  39.86 
 
 
164 aa  117  3.9999999999999996e-26  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000000974852  n/a   
 
 
-
 
NC_008752  Aave_3320  AsnC family transcriptional regulator  41.43 
 
 
170 aa  117  3.9999999999999996e-26  Acidovorax citrulli AAC00-1  Bacteria  hitchhiker  0.0097323  normal 
 
 
-
 
NC_012917  PC1_1718  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  3.9999999999999996e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159084  n/a   
 
 
-
 
NC_012912  Dd1591_2361  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  3.9999999999999996e-26  Dickeya zeae Ech1591  Bacteria  normal  0.84534  n/a   
 
 
-
 
NC_013456  VEA_003880  leucine-responsive regulatory protein  39.86 
 
 
164 aa  117  3.9999999999999996e-26  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00000693258  n/a   
 
 
-
 
NC_012880  Dd703_2261  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  3.9999999999999996e-26  Dickeya dadantii Ech703  Bacteria  normal  0.0124412  n/a   
 
 
-
 
CP001509  ECD_00893  DNA-binding transcriptional dual regulator, leucine-binding  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2754  transcriptional regulator, AsnC family  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000328569  n/a   
 
 
-
 
NC_009783  VIBHAR_01796  leucine-responsive transcriptional regulator  39.86 
 
 
164 aa  117  4.9999999999999996e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009800  EcHS_A0994  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Escherichia coli HS  Bacteria  decreased coverage  0.0000000000000266294  n/a   
 
 
-
 
NC_009801  EcE24377A_0964  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000271902  n/a   
 
 
-
 
NC_011353  ECH74115_1051  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0000229844  normal 
 
 
-
 
NC_009832  Spro_1682  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Serratia proteamaculans 568  Bacteria  normal  0.94162  normal  0.324618 
 
 
-
 
NC_010658  SbBS512_E2439  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000889772  n/a   
 
 
-
 
NC_010498  EcSMS35_2231  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000028804  normal 
 
 
-
 
NC_009436  Ent638_1413  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000135875  normal 
 
 
-
 
NC_011071  Smal_2221  transcriptional regulator, AsnC family  42.36 
 
 
154 aa  117  4.9999999999999996e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.17044  normal 
 
 
-
 
NC_012892  B21_00900  hypothetical protein  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2707  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  4.9999999999999996e-26  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.0000640359  normal 
 
 
-
 
NC_011083  SeHA_C1058  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  6e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  decreased coverage  0.000658641  normal 
 
 
-
 
NC_009511  Swit_4567  AsnC family transcriptional regulator  39.86 
 
 
158 aa  117  6e-26  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.328768 
 
 
-
 
NC_011080  SNSL254_A0993  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  6e-26  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000182939  normal 
 
 
-
 
NC_011149  SeAg_B0964  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  6e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000000000969196  n/a   
 
 
-
 
NC_011094  SeSA_A1073  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  6e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000166195  normal 
 
 
-
 
NC_011365  Gdia_0671  transcriptional regulator, AsnC family  45.52 
 
 
145 aa  117  6e-26  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0943569  hitchhiker  0.00922833 
 
 
-
 
NC_011205  SeD_A1024  leucine-responsive transcriptional regulator  40.58 
 
 
164 aa  117  6e-26  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  unclonable  0.00000719526  normal 
 
 
-
 
NC_009511  Swit_1115  AsnC family transcriptional regulator  41.3 
 
 
164 aa  115  9.999999999999999e-26  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.266621 
 
 
-
 
NC_002947  PP_4776  AsnC family transcriptional regulator  42.45 
 
 
158 aa  116  9.999999999999999e-26  Pseudomonas putida KT2440  Bacteria  normal  0.524712  hitchhiker  0.00402147 
 
 
-
 
NC_008825  Mpe_A3749  AsnC family transcriptional regulator  39.73 
 
 
181 aa  116  9.999999999999999e-26  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.648242 
 
 
-
 
NC_010501  PputW619_0644  AsnC family transcriptional regulator  42.45 
 
 
158 aa  116  9.999999999999999e-26  Pseudomonas putida W619  Bacteria  normal  0.315347  normal 
 
 
-
 
NC_007520  Tcr_1877  AsnC family transcriptional regulator  40.14 
 
 
157 aa  116  9.999999999999999e-26  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4830  AsnC family transcriptional regulator  42.45 
 
 
158 aa  116  9.999999999999999e-26  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4652  AsnC family transcriptional regulator  42.45 
 
 
158 aa  116  9.999999999999999e-26  Pseudomonas putida F1  Bacteria  normal  normal  0.354887 
 
 
-
 
NC_003295  RSc0761  transcription regulator protein  42.47 
 
 
176 aa  115  1.9999999999999998e-25  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.308793 
 
 
-
 
NC_007948  Bpro_0399  AsnC family transcriptional regulator  41.96 
 
 
159 aa  115  1.9999999999999998e-25  Polaromonas sp. JS666  Bacteria  normal  normal  0.318604 
 
 
-
 
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