More than 300 homologs were found in PanDaTox collection
for query gene Shewmr4_1962 on replicon NC_008321
Organism: Shewanella sp. MR-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004347  SO_2305  leucine-responsive transcriptional regulator  100 
 
 
168 aa  342  1e-93  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2012  leucine-responsive transcriptional regulator  100 
 
 
168 aa  342  1e-93  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000455922  n/a   
 
 
-
 
NC_008577  Shewana3_2049  leucine-responsive transcriptional regulator  100 
 
 
168 aa  342  1e-93  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0000202075  hitchhiker  0.00142974 
 
 
-
 
NC_008321  Shewmr4_1962  leucine-responsive transcriptional regulator  100 
 
 
168 aa  342  1e-93  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000351105  normal  0.663498 
 
 
-
 
NC_008322  Shewmr7_2014  leucine-responsive transcriptional regulator  100 
 
 
168 aa  342  1e-93  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000513166  normal  0.0218506 
 
 
-
 
NC_009997  Sbal195_2324  leucine-responsive transcriptional regulator  99.4 
 
 
168 aa  341  2.9999999999999997e-93  Shewanella baltica OS195  Bacteria  hitchhiker  0.000000733571  normal 
 
 
-
 
NC_009665  Shew185_2216  leucine-responsive transcriptional regulator  99.4 
 
 
168 aa  341  2.9999999999999997e-93  Shewanella baltica OS185  Bacteria  unclonable  0.0000000000025021  n/a   
 
 
-
 
NC_009052  Sbal_2155  leucine-responsive transcriptional regulator  99.4 
 
 
168 aa  341  2.9999999999999997e-93  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000000584376  n/a   
 
 
-
 
NC_011663  Sbal223_2190  leucine-responsive transcriptional regulator  99.4 
 
 
168 aa  341  2.9999999999999997e-93  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000625254  normal  0.0646213 
 
 
-
 
NC_008700  Sama_1771  leucine-responsive transcriptional regulator  93.29 
 
 
167 aa  320  8e-87  Shewanella amazonensis SB2B  Bacteria  unclonable  0.0000000022114  normal  0.0203642 
 
 
-
 
NC_009092  Shew_2025  leucine-responsive transcriptional regulator  94.44 
 
 
167 aa  315  2e-85  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000839293  unclonable  0.00000134482 
 
 
-
 
NC_010506  Swoo_2484  leucine-responsive transcriptional regulator  93.83 
 
 
167 aa  314  4e-85  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000151917  unclonable  0.000000015798 
 
 
-
 
NC_009831  Ssed_2126  leucine-responsive transcriptional regulator  93.83 
 
 
167 aa  313  6e-85  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000250913  normal  0.0385806 
 
 
-
 
NC_009901  Spea_2234  leucine-responsive transcriptional regulator  93.21 
 
 
167 aa  311  1.9999999999999998e-84  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000872232  n/a   
 
 
-
 
NC_008345  Sfri_1794  leucine-responsive transcriptional regulator  87.8 
 
 
165 aa  296  6e-80  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000016537  n/a   
 
 
-
 
NC_007954  Sden_1742  leucine-responsive transcriptional regulator  85.89 
 
 
166 aa  294  4e-79  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000000110042  n/a   
 
 
-
 
NC_009783  VIBHAR_01796  leucine-responsive transcriptional regulator  81.37 
 
 
164 aa  271  3e-72  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I1840  leucine-responsive transcriptional regulator  83.23 
 
 
163 aa  271  3e-72  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.757131  n/a   
 
 
-
 
NC_009832  Spro_1682  leucine-responsive transcriptional regulator  80.75 
 
 
164 aa  271  4.0000000000000004e-72  Serratia proteamaculans 568  Bacteria  normal  0.94162  normal  0.324618 
 
 
-
 
NC_013456  VEA_003880  leucine-responsive regulatory protein  80.75 
 
 
164 aa  269  1e-71  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00000693258  n/a   
 
 
-
 
NC_013421  Pecwa_1986  leucine-responsive transcriptional regulator  80.12 
 
 
164 aa  268  2e-71  Pectobacterium wasabiae WPP163  Bacteria  normal  0.64528  n/a   
 
 
-
 
NC_012917  PC1_1718  leucine-responsive transcriptional regulator  80.12 
 
 
164 aa  268  2e-71  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159084  n/a   
 
 
-
 
NC_012880  Dd703_2261  leucine-responsive transcriptional regulator  80.12 
 
 
164 aa  268  2e-71  Dickeya dadantii Ech703  Bacteria  normal  0.0124412  n/a   
 
 
-
 
NC_012912  Dd1591_2361  leucine-responsive transcriptional regulator  80.12 
 
 
164 aa  268  2e-71  Dickeya zeae Ech1591  Bacteria  normal  0.84534  n/a   
 
 
-
 
CP001509  ECD_00893  DNA-binding transcriptional dual regulator, leucine-binding  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2754  transcriptional regulator, AsnC family  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000328569  n/a   
 
 
-
 
NC_010658  SbBS512_E2439  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000889772  n/a   
 
 
-
 
NC_009436  Ent638_1413  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000135875  normal 
 
 
-
 
NC_011094  SeSA_A1073  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000166195  normal 
 
 
-
 
NC_011083  SeHA_C1058  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  decreased coverage  0.000658641  normal 
 
 
-
 
NC_010468  EcolC_2707  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.0000640359  normal 
 
 
-
 
NC_011080  SNSL254_A0993  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000182939  normal 
 
 
-
 
NC_009801  EcE24377A_0964  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000271902  n/a   
 
 
-
 
NC_011205  SeD_A1024  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  unclonable  0.00000719526  normal 
 
 
-
 
NC_012892  B21_00900  hypothetical protein  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2231  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000028804  normal 
 
 
-
 
NC_011149  SeAg_B0964  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000000000969196  n/a   
 
 
-
 
NC_009800  EcHS_A0994  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Escherichia coli HS  Bacteria  decreased coverage  0.0000000000000266294  n/a   
 
 
-
 
NC_011353  ECH74115_1051  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  267  5.9999999999999995e-71  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0000229844  normal 
 
 
-
 
NC_009457  VC0395_A1494  leucine-responsive transcriptional regulator  79.5 
 
 
164 aa  265  2e-70  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000000974852  n/a   
 
 
-
 
NC_009708  YpsIP31758_2597  leucine-responsive transcriptional regulator  77.64 
 
 
164 aa  258  4e-68  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000282665  n/a   
 
 
-
 
NC_010465  YPK_2686  leucine-responsive transcriptional regulator  77.64 
 
 
164 aa  258  4e-68  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.247423  n/a   
 
 
-
 
NC_010159  YpAngola_A1612  leucine-responsive transcriptional regulator  77.64 
 
 
164 aa  258  4e-68  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000163573  normal 
 
 
-
 
NC_008709  Ping_3606  transcriptional regulator of AsnC/Lrp family protein  72.73 
 
 
155 aa  237  5.999999999999999e-62  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2760  leucine-responsive transcriptional regulator  71.61 
 
 
158 aa  228  4e-59  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_1187  leucine-responsive transcriptional regulator  73.15 
 
 
158 aa  225  2e-58  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2461  leucine-responsive transcriptional regulator  66.46 
 
 
161 aa  220  6e-57  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.000000018296  n/a   
 
 
-
 
NC_011138  MADE_02115  leucine-responsive transcriptional regulator  69.5 
 
 
144 aa  211  2.9999999999999995e-54  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.0000100067  n/a   
 
 
-
 
NC_008752  Aave_3320  AsnC family transcriptional regulator  59.09 
 
 
170 aa  193  1e-48  Acidovorax citrulli AAC00-1  Bacteria  hitchhiker  0.0097323  normal 
 
 
-
 
NC_010622  Bphy_0766  AsnC family transcriptional regulator  55.97 
 
 
162 aa  191  3e-48  Burkholderia phymatum STM815  Bacteria  normal  normal  0.364193 
 
 
-
 
NC_007948  Bpro_0399  AsnC family transcriptional regulator  58.06 
 
 
159 aa  190  8e-48  Polaromonas sp. JS666  Bacteria  normal  normal  0.318604 
 
 
-
 
NC_012560  Avin_48000  leucin responsive regulatory protein  59.18 
 
 
162 aa  187  4e-47  Azotobacter vinelandii DJ  Bacteria  normal  0.964771  n/a   
 
 
-
 
NC_007005  Psyr_0234  regulatory proteins, AsnC/Lrp  59.87 
 
 
162 aa  187  5e-47  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4443  AsnC family transcriptional regulator  58.28 
 
 
157 aa  187  5e-47  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.270446 
 
 
-
 
NC_008782  Ajs_2419  AsnC family transcriptional regulator  59.74 
 
 
159 aa  187  5.999999999999999e-47  Acidovorax sp. JS42  Bacteria  normal  0.370827  normal  0.408785 
 
 
-
 
NC_011992  Dtpsy_1428  transcriptional regulator, AsnC family  59.74 
 
 
159 aa  187  5.999999999999999e-47  Acidovorax ebreus TPSY  Bacteria  normal  0.92008  n/a   
 
 
-
 
NC_004578  PSPTO_0100  leucine-responsive regulatory protein  59.21 
 
 
162 aa  186  1e-46  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0797  transcriptional regulator, AsnC family  56.21 
 
 
165 aa  186  1e-46  Ralstonia pickettii 12J  Bacteria  normal  0.163413  normal  0.817989 
 
 
-
 
NC_010681  Bphyt_2981  transcriptional regulator, AsnC family  53.46 
 
 
162 aa  185  3e-46  Burkholderia phytofirmans PsJN  Bacteria  normal  0.160309  hitchhiker  0.00904587 
 
 
-
 
NC_007951  Bxe_A1002  AsnC family transcriptional regulator  53.46 
 
 
162 aa  185  3e-46  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.782239 
 
 
-
 
NC_007434  BURPS1710b_2973  leucine-responsive regulatory protein  52.5 
 
 
162 aa  184  4e-46  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2924  leucine-responsive regulatory protein  52.5 
 
 
162 aa  184  4e-46  Burkholderia pseudomallei 1106a  Bacteria  normal  0.518607  n/a   
 
 
-
 
NC_007651  BTH_I1657  leucine-responsive regulatory protein  52.5 
 
 
162 aa  184  4e-46  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0741  AsnC family transcriptional regulator  53.8 
 
 
169 aa  184  4e-46  Cupriavidus metallidurans CH34  Bacteria  normal  0.703113  normal 
 
 
-
 
NC_009074  BURPS668_2863  leucine-responsive regulatory protein  52.5 
 
 
162 aa  184  4e-46  Burkholderia pseudomallei 668  Bacteria  normal  0.437935  n/a   
 
 
-
 
NC_012856  Rpic12D_0868  transcriptional regulator, AsnC family  55.56 
 
 
165 aa  184  4e-46  Ralstonia pickettii 12D  Bacteria  normal  0.67384  normal  0.614838 
 
 
-
 
NC_009654  Mmwyl1_4392  AsnC family transcriptional regulator  64.05 
 
 
158 aa  184  6e-46  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1629  AsnC family transcriptional regulator  55.28 
 
 
159 aa  183  9e-46  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00470119 
 
 
-
 
NC_003295  RSc0927  leucine-responsive regulatory DNA-binding transcription regulator protein  53.66 
 
 
165 aa  183  1.0000000000000001e-45  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.276629 
 
 
-
 
NC_007492  Pfl01_5527  AsnC family transcriptional regulator  57.89 
 
 
162 aa  183  1.0000000000000001e-45  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.414864 
 
 
-
 
NC_007510  Bcep18194_A4179  AsnC family transcriptional regulator  51.57 
 
 
162 aa  182  2.0000000000000003e-45  Burkholderia sp. 383  Bacteria  normal  0.401233  normal 
 
 
-
 
NC_008542  Bcen2424_1065  AsnC family transcriptional regulator  51.57 
 
 
182 aa  182  2.0000000000000003e-45  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1024  AsnC family transcriptional regulator  51.57 
 
 
182 aa  182  2.0000000000000003e-45  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0586  AsnC family transcriptional regulator  51.57 
 
 
182 aa  182  2.0000000000000003e-45  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_5323  AsnC family transcriptional regulator  59.18 
 
 
162 aa  181  3e-45  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0644813 
 
 
-
 
NC_002947  PP_5271  leucine-responsive regulatory protein  59.18 
 
 
162 aa  181  3e-45  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0199  AsnC family transcriptional regulator  59.18 
 
 
162 aa  181  3e-45  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00074926 
 
 
-
 
NC_009512  Pput_5181  AsnC family transcriptional regulator  59.18 
 
 
162 aa  181  3e-45  Pseudomonas putida F1  Bacteria  normal  0.73265  normal  0.0995684 
 
 
-
 
NC_008785  BMASAVP1_A2550  leucine-responsive regulatory protein  51.88 
 
 
162 aa  181  4.0000000000000006e-45  Burkholderia mallei SAVP1  Bacteria  normal  0.678942  n/a   
 
 
-
 
NC_006348  BMA0407  leucine-responsive regulatory protein  51.88 
 
 
162 aa  181  4.0000000000000006e-45  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0924  leucine-responsive regulatory protein  51.88 
 
 
162 aa  181  4.0000000000000006e-45  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0223  leucine-responsive regulatory protein  51.88 
 
 
162 aa  181  4.0000000000000006e-45  Burkholderia mallei NCTC 10247  Bacteria  normal  0.396703  n/a   
 
 
-
 
NC_008463  PA14_70080  leucine-responsive regulatory protein  59.18 
 
 
162 aa  181  5.0000000000000004e-45  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0945  AsnC family transcriptional regulator  50.62 
 
 
182 aa  181  5.0000000000000004e-45  Burkholderia ambifaria MC40-6  Bacteria  normal  0.962352  normal 
 
 
-
 
NC_009656  PSPA7_6082  leucine-responsive regulatory protein  59.18 
 
 
162 aa  181  5.0000000000000004e-45  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0941  AsnC family transcriptional regulator  50.62 
 
 
182 aa  181  5.0000000000000004e-45  Burkholderia ambifaria AMMD  Bacteria  normal  0.344592  n/a   
 
 
-
 
NC_009439  Pmen_0244  AsnC family transcriptional regulator  59.18 
 
 
162 aa  181  6e-45  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0443  transcriptional regulator, AsnC family  57.82 
 
 
159 aa  181  6e-45  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2239  AsnC family transcriptional regulator  50.94 
 
 
162 aa  180  7e-45  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03072  leucine responsive regulatory protein  56 
 
 
159 aa  180  7e-45  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2574  AsnC family transcriptional regulator  55.56 
 
 
154 aa  179  2e-44  Sinorhizobium medicae WSM419  Bacteria  normal  0.0518335  normal  0.327443 
 
 
-
 
NC_007347  Reut_A2546  AsnC family transcriptional regulator  51.27 
 
 
167 aa  179  2e-44  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1531  AsnC family transcriptional regulator  61.27 
 
 
165 aa  178  4e-44  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3749  AsnC family transcriptional regulator  56.38 
 
 
181 aa  177  4e-44  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.648242 
 
 
-
 
NC_012791  Vapar_3966  transcriptional regulator, AsnC family  55.92 
 
 
155 aa  177  7e-44  Variovorax paradoxus S110  Bacteria  normal  0.716061  n/a   
 
 
-
 
NC_011894  Mnod_1442  transcriptional regulator, AsnC family  60.14 
 
 
151 aa  176  1e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3993  transcriptional regulator, AsnC family  54.73 
 
 
155 aa  173  9e-43  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2390  transcriptional regulator, AsnC family  56.76 
 
 
166 aa  171  5e-42  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1596  AsnC family transcriptional regulator  53.59 
 
 
153 aa  171  5.999999999999999e-42  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.699626  n/a   
 
 
-
 
NC_009511  Swit_1115  AsnC family transcriptional regulator  52.67 
 
 
164 aa  170  6.999999999999999e-42  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.266621 
 
 
-
 
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