More than 300 homologs were found in PanDaTox collection
for query gene Patl_0500 on replicon NC_008228
Organism: Pseudoalteromonas atlantica T6c



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008228  Patl_0500  AsnC family transcriptional regulator  100 
 
 
150 aa  310  2.9999999999999996e-84  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1361  AsnC family transcriptional regulator  66.9 
 
 
167 aa  211  2.9999999999999995e-54  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.658235  normal 
 
 
-
 
NC_009952  Dshi_2477  putative leucine-responsive regulatory protein  63.45 
 
 
154 aa  211  3.9999999999999995e-54  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.728563 
 
 
-
 
NC_008043  TM1040_3163  AsnC family transcriptional regulator  65.1 
 
 
150 aa  211  3.9999999999999995e-54  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2774  AsnC family transcriptional regulator  63.09 
 
 
150 aa  200  5e-51  Jannaschia sp. CCS1  Bacteria  normal  0.315931  normal  0.712036 
 
 
-
 
NC_008687  Pden_3626  AsnC family transcriptional regulator  56.85 
 
 
172 aa  187  5e-47  Paracoccus denitrificans PD1222  Bacteria  decreased coverage  0.00949051  normal 
 
 
-
 
NC_011313  VSAL_II1042  HTH-type transcriptional regulator, AsnC family  58.9 
 
 
147 aa  184  4e-46  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06912  transcriptional regulator  56.55 
 
 
171 aa  184  4e-46  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000908  transcriptional regulator AsnC family  59.2 
 
 
126 aa  164  2.9999999999999998e-40  Vibrio sp. Ex25  Bacteria  normal  0.499259  n/a   
 
 
-
 
NC_009457  VC0395_A1316  AsnC family transcriptional regulator  59.63 
 
 
110 aa  136  1e-31  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3847  AsnC family transcriptional regulator  41.38 
 
 
164 aa  125  2.0000000000000002e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0723  proline dehydrogenase transcriptional activator  40.69 
 
 
164 aa  124  6e-28  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1794  leucine-responsive transcriptional regulator  37.32 
 
 
165 aa  120  7e-27  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000016537  n/a   
 
 
-
 
NC_009901  Spea_2234  leucine-responsive transcriptional regulator  38.03 
 
 
167 aa  118  3e-26  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000872232  n/a   
 
 
-
 
NC_011663  Sbal223_2190  leucine-responsive transcriptional regulator  37.32 
 
 
168 aa  117  4.9999999999999996e-26  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000625254  normal  0.0646213 
 
 
-
 
NC_009052  Sbal_2155  leucine-responsive transcriptional regulator  37.32 
 
 
168 aa  117  4.9999999999999996e-26  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000000584376  n/a   
 
 
-
 
NC_009997  Sbal195_2324  leucine-responsive transcriptional regulator  37.32 
 
 
168 aa  117  4.9999999999999996e-26  Shewanella baltica OS195  Bacteria  hitchhiker  0.000000733571  normal 
 
 
-
 
NC_009665  Shew185_2216  leucine-responsive transcriptional regulator  37.32 
 
 
168 aa  117  4.9999999999999996e-26  Shewanella baltica OS185  Bacteria  unclonable  0.0000000000025021  n/a   
 
 
-
 
NC_004347  SO_2305  leucine-responsive transcriptional regulator  37.32 
 
 
168 aa  117  6e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2012  leucine-responsive transcriptional regulator  37.32 
 
 
168 aa  117  6e-26  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000455922  n/a   
 
 
-
 
NC_008577  Shewana3_2049  leucine-responsive transcriptional regulator  37.32 
 
 
168 aa  117  6e-26  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0000202075  hitchhiker  0.00142974 
 
 
-
 
NC_008321  Shewmr4_1962  leucine-responsive transcriptional regulator  37.32 
 
 
168 aa  117  6e-26  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000351105  normal  0.663498 
 
 
-
 
NC_008322  Shewmr7_2014  leucine-responsive transcriptional regulator  37.32 
 
 
168 aa  117  6e-26  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000513166  normal  0.0218506 
 
 
-
 
NC_010506  Swoo_2484  leucine-responsive transcriptional regulator  36.62 
 
 
167 aa  117  7e-26  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000151917  unclonable  0.000000015798 
 
 
-
 
NC_008700  Sama_1771  leucine-responsive transcriptional regulator  37.32 
 
 
167 aa  116  9.999999999999999e-26  Shewanella amazonensis SB2B  Bacteria  unclonable  0.0000000022114  normal  0.0203642 
 
 
-
 
NC_009831  Ssed_2126  leucine-responsive transcriptional regulator  36.62 
 
 
167 aa  116  9.999999999999999e-26  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000250913  normal  0.0385806 
 
 
-
 
NC_007912  Sde_2299  AsnC family transcriptional regulator  42.96 
 
 
156 aa  116  9.999999999999999e-26  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00073028 
 
 
-
 
NC_007954  Sden_1742  leucine-responsive transcriptional regulator  35.92 
 
 
166 aa  116  9.999999999999999e-26  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000000110042  n/a   
 
 
-
 
NC_008228  Patl_2461  leucine-responsive transcriptional regulator  38.46 
 
 
161 aa  116  9.999999999999999e-26  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.000000018296  n/a   
 
 
-
 
NC_009092  Shew_2025  leucine-responsive transcriptional regulator  37.32 
 
 
167 aa  116  9.999999999999999e-26  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000839293  unclonable  0.00000134482 
 
 
-
 
NC_013456  VEA_003880  leucine-responsive regulatory protein  37.93 
 
 
164 aa  115  1.9999999999999998e-25  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00000693258  n/a   
 
 
-
 
NC_009428  Rsph17025_2327  AsnC family transcriptional regulator  39.31 
 
 
151 aa  115  1.9999999999999998e-25  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0714715  normal 
 
 
-
 
NC_008709  Ping_3606  transcriptional regulator of AsnC/Lrp family protein  37.24 
 
 
155 aa  115  1.9999999999999998e-25  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0705  AsnC family transcriptional regulator  36.11 
 
 
156 aa  115  1.9999999999999998e-25  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01796  leucine-responsive transcriptional regulator  37.93 
 
 
164 aa  115  1.9999999999999998e-25  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008254  Meso_1324  AsnC family transcriptional regulator  38.89 
 
 
150 aa  115  1.9999999999999998e-25  Chelativorans sp. BNC1  Bacteria  normal  0.719808  n/a   
 
 
-
 
NC_007643  Rru_A3685  AsnC family transcriptional regulator  44.7 
 
 
174 aa  114  3e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.930939  n/a   
 
 
-
 
NC_009457  VC0395_A1494  leucine-responsive transcriptional regulator  37.93 
 
 
164 aa  115  3e-25  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000000974852  n/a   
 
 
-
 
NC_011312  VSAL_I1840  leucine-responsive transcriptional regulator  37.93 
 
 
163 aa  115  3e-25  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.757131  n/a   
 
 
-
 
NC_008309  HS_1187  leucine-responsive transcriptional regulator  38.62 
 
 
158 aa  115  3e-25  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1319  AsnC family transcriptional regulator  38.41 
 
 
160 aa  114  3.9999999999999997e-25  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0576  AsnC family transcriptional regulator  38.41 
 
 
160 aa  114  3.9999999999999997e-25  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2510  AsnC family transcriptional regulator  38.41 
 
 
160 aa  114  3.9999999999999997e-25  Burkholderia pseudomallei 1710b  Bacteria  normal  0.161372  n/a   
 
 
-
 
NC_007493  RSP_2165  AsnC family transcriptional regulator  38.62 
 
 
151 aa  114  3.9999999999999997e-25  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.653585  n/a   
 
 
-
 
NC_009079  BMA10247_A0991  AsnC family transcriptional regulator  38.41 
 
 
160 aa  114  3.9999999999999997e-25  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3495  AsnC family transcriptional regulator  36.81 
 
 
176 aa  114  3.9999999999999997e-25  Jannaschia sp. CCS1  Bacteria  normal  normal  0.0302787 
 
 
-
 
NC_008784  BMASAVP1_0301  AsnC family transcriptional regulator  38.41 
 
 
160 aa  114  3.9999999999999997e-25  Burkholderia mallei SAVP1  Bacteria  normal  0.0951908  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1253  AsnC family transcriptional regulator  38.41 
 
 
160 aa  114  3.9999999999999997e-25  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1325  AsnC family transcriptional regulator  38.41 
 
 
160 aa  114  3.9999999999999997e-25  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1351  AsnC family transcriptional regulator  36.99 
 
 
155 aa  114  5e-25  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.986607  n/a   
 
 
-
 
NC_009485  BBta_0023  AsnC family transcriptional regulator  38.73 
 
 
159 aa  114  5e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.28543  normal  0.347248 
 
 
-
 
NC_009049  Rsph17029_0837  AsnC family transcriptional regulator  38.62 
 
 
158 aa  114  5e-25  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0388954  normal 
 
 
-
 
NC_008347  Mmar10_1059  AsnC family transcriptional regulator  41.79 
 
 
159 aa  114  5e-25  Maricaulis maris MCS10  Bacteria  normal  0.0704538  normal 
 
 
-
 
NC_007650  BTH_II1485  AsnC family transcriptional regulator  38.41 
 
 
159 aa  114  6e-25  Burkholderia thailandensis E264  Bacteria  normal  0.457516  n/a   
 
 
-
 
CP001509  ECD_00893  DNA-binding transcriptional dual regulator, leucine-binding  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2754  transcriptional regulator, AsnC family  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000328569  n/a   
 
 
-
 
NC_009800  EcHS_A0994  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Escherichia coli HS  Bacteria  decreased coverage  0.0000000000000266294  n/a   
 
 
-
 
NC_011094  SeSA_A1073  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000166195  normal 
 
 
-
 
NC_011149  SeAg_B0964  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000000000969196  n/a   
 
 
-
 
NC_009436  Ent638_1413  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000135875  normal 
 
 
-
 
NC_007347  Reut_A0810  AsnC family transcriptional regulator  44.2 
 
 
162 aa  113  1.0000000000000001e-24  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1058  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  decreased coverage  0.000658641  normal 
 
 
-
 
NC_014210  Ndas_3737  transcriptional regulator, AsnC family  38.41 
 
 
150 aa  112  1.0000000000000001e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.659957  normal 
 
 
-
 
NC_007643  Rru_A0655  AsnC family transcriptional regulator  38.36 
 
 
196 aa  112  1.0000000000000001e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2707  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.0000640359  normal 
 
 
-
 
NC_009511  Swit_4567  AsnC family transcriptional regulator  37.76 
 
 
158 aa  113  1.0000000000000001e-24  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.328768 
 
 
-
 
NC_011080  SNSL254_A0993  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000182939  normal 
 
 
-
 
NC_009801  EcE24377A_0964  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000271902  n/a   
 
 
-
 
NC_010498  EcSMS35_2231  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000028804  normal 
 
 
-
 
NC_011205  SeD_A1024  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  unclonable  0.00000719526  normal 
 
 
-
 
NC_012892  B21_00900  hypothetical protein  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0615  AsnC family transcriptional regulator  38.19 
 
 
166 aa  113  1.0000000000000001e-24  Ruegeria sp. TM1040  Bacteria  normal  0.615736  normal 
 
 
-
 
NC_011353  ECH74115_1051  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0000229844  normal 
 
 
-
 
NC_010658  SbBS512_E2439  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  1.0000000000000001e-24  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000889772  n/a   
 
 
-
 
NC_009511  Swit_1115  AsnC family transcriptional regulator  38.03 
 
 
164 aa  112  1.0000000000000001e-24  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.266621 
 
 
-
 
NC_009719  Plav_2311  AsnC family transcriptional regulator  38.03 
 
 
161 aa  112  2.0000000000000002e-24  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.503537  hitchhiker  0.00316329 
 
 
-
 
NC_012880  Dd703_2261  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  2.0000000000000002e-24  Dickeya dadantii Ech703  Bacteria  normal  0.0124412  n/a   
 
 
-
 
NC_010515  Bcenmc03_5660  AsnC family transcriptional regulator  38.03 
 
 
155 aa  112  2.0000000000000002e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1718  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  2.0000000000000002e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159084  n/a   
 
 
-
 
NC_013421  Pecwa_1986  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  2.0000000000000002e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  0.64528  n/a   
 
 
-
 
NC_009720  Xaut_3448  AsnC family transcriptional regulator  37.06 
 
 
156 aa  112  2.0000000000000002e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  0.0711543  normal 
 
 
-
 
NC_010338  Caul_3655  AsnC family transcriptional regulator  38.73 
 
 
156 aa  112  2.0000000000000002e-24  Caulobacter sp. K31  Bacteria  normal  normal  0.182716 
 
 
-
 
NC_012912  Dd1591_2361  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  112  2.0000000000000002e-24  Dickeya zeae Ech1591  Bacteria  normal  0.84534  n/a   
 
 
-
 
NC_010465  YPK_2686  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  111  3e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.247423  n/a   
 
 
-
 
NC_004310  BR1502  leucine-responsive regulatory protein  36.81 
 
 
156 aa  111  3e-24  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4644  AsnC family transcriptional regulator  38.03 
 
 
155 aa  111  3e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  0.52735  normal 
 
 
-
 
NC_009505  BOV_1452  leucine-responsive regulatory protein  36.81 
 
 
156 aa  111  3e-24  Brucella ovis ATCC 25840  Bacteria  normal  0.423592  n/a   
 
 
-
 
NC_009708  YpsIP31758_2597  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  111  3e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000282665  n/a   
 
 
-
 
NC_009832  Spro_1682  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  111  3e-24  Serratia proteamaculans 568  Bacteria  normal  0.94162  normal  0.324618 
 
 
-
 
NC_010159  YpAngola_A1612  leucine-responsive transcriptional regulator  37.24 
 
 
164 aa  111  3e-24  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000163573  normal 
 
 
-
 
NC_008061  Bcen_3724  AsnC family transcriptional regulator  38.03 
 
 
155 aa  111  3e-24  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.201895  n/a   
 
 
-
 
NC_013595  Sros_0181  putative transcriptional regulator, AsnC family  40 
 
 
150 aa  111  4.0000000000000004e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0118  AsnC family transcriptional regulator  36.96 
 
 
152 aa  111  4.0000000000000004e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1480  AsnC family transcriptional regulator  38.73 
 
 
153 aa  111  4.0000000000000004e-24  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS02081  transcription regulator protein  38.73 
 
 
152 aa  110  5e-24  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4443  AsnC family transcriptional regulator  37.32 
 
 
157 aa  110  5e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.270446 
 
 
-
 
NC_007492  Pfl01_5672  AsnC family transcriptional regulator  39.44 
 
 
157 aa  110  5e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0400  transcriptional regulator, AsnC family  37.68 
 
 
152 aa  110  5e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  0.914468  normal 
 
 
-
 
NC_008825  Mpe_A2116  AsnC family transcriptional regulator  39.04 
 
 
156 aa  110  5e-24  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.0323344 
 
 
-
 
NC_007488  RSP_3973  AsnC family transcriptional regulator  38.97 
 
 
154 aa  110  6e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.918788  n/a   
 
 
-
 
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