Gene Phep_1555 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1555 
Symbol 
ID8252657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1841258 
End bp1841728 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content36% 
IMG OID644935209 
Productregulatory protein AsnC/Lrp family 
Protein accessionYP_003091830 
Protein GI255531458 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.469049 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACAG AACTAGATAA AACGGATTTT AAAATTCTTA AATTATTACA GGAAAATGGA 
AGGATGACAA ATTTACTATT GTCTCAGGAG ATCGGACTTT CTCCTGCACC TACATTAGAA
CGTGTAAGAA AGCTTGAAGT ATCTGGTTTT ATTAAAAGCT ACCATGCCCT GGTTGATGAA
GAAAAGCTGG GTTTGGGTAT AAAAACCTTT ATACAGGTAC AGCTCGATTT TCATAAGAAC
AATACCATCC AGATTTTCCT GGATGAAGTG AACCAGATCA AAGAGATTAC AGAATGCCAC
CACGTTACGG GACAGGCTGA TTTTCTTTTA AAGGTATATG TCAATGATAT TAAAGCTTAT
GAGCGCCTGA TCATGGATAA GATCAGCAAA ATCTCAGTAG TAAAAACTTT TCAAACGATG
ATGATCATGT CTACCACCAA GAAAGAACCC ATTGTTCCTT TGGAATATTA A
 
Protein sequence
MATELDKTDF KILKLLQENG RMTNLLLSQE IGLSPAPTLE RVRKLEVSGF IKSYHALVDE 
EKLGLGIKTF IQVQLDFHKN NTIQIFLDEV NQIKEITECH HVTGQADFLL KVYVNDIKAY
ERLIMDKISK ISVVKTFQTM MIMSTTKKEP IVPLEY