More than 300 homologs were found in PanDaTox collection
for query gene Smed_6311 on replicon NC_009621
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009621  Smed_6311  binding-protein-dependent transport systems inner membrane component  100 
 
 
266 aa  516  1.0000000000000001e-145  Sinorhizobium medicae WSM419  Bacteria  normal  0.103333  normal 
 
 
-
 
NC_007493  RSP_2156  ABC transporter, inner membrane subunit  73.38 
 
 
265 aa  393  1e-108  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0830  binding-protein-dependent transport systems inner membrane component  73.38 
 
 
265 aa  393  1e-108  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.225733  normal 
 
 
-
 
NC_009668  Oant_3580  binding-protein-dependent transport systems inner membrane component  78.2 
 
 
266 aa  384  1e-106  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.718576  n/a   
 
 
-
 
NC_009668  Oant_4153  binding-protein-dependent transport systems inner membrane component  34.6 
 
 
263 aa  139  6e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.829399  n/a   
 
 
-
 
NC_013922  Nmag_0084  binding-protein-dependent transport systems inner membrane component  34.32 
 
 
272 aa  136  4e-31  Natrialba magadii ATCC 43099  Archaea  normal  0.0395984  n/a   
 
 
-
 
NC_008044  TM1040_2990  binding-protein-dependent transport systems inner membrane component  34.48 
 
 
391 aa  135  9e-31  Ruegeria sp. TM1040  Bacteria  normal  0.0689786  normal  0.478679 
 
 
-
 
NC_010184  BcerKBAB4_1203  ornithine carbamoyltransferase  34.65 
 
 
266 aa  134  1.9999999999999998e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4005  spermidine/putrescine ABC transporter, permease protein  34.19 
 
 
266 aa  132  6e-30  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000178374 
 
 
-
 
NC_011725  BCB4264_A1339  spermidine/putrescine ABC transporter, permease protein  34.19 
 
 
266 aa  132  6e-30  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1400  spermidine/putrescine ABC transporter, permease protein  33.76 
 
 
266 aa  131  9e-30  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1201  spermidine/putrescine ABC transporter permease  33.76 
 
 
266 aa  131  9e-30  Bacillus anthracis str. Sterne  Bacteria  normal  0.440242  n/a   
 
 
-
 
NC_005957  BT9727_1179  spermidine/putrescine ABC transporter, permease  33.76 
 
 
266 aa  131  9e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1181  spermidine/putrescine ABC transporter, permease  33.76 
 
 
266 aa  131  9e-30  Bacillus cereus E33L  Bacteria  normal  0.0752832  n/a   
 
 
-
 
NC_007530  GBAA_1299  spermidine/putrescine ABC transporter permease  33.76 
 
 
266 aa  131  9e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1377  spermidine/putrescine ABC transporter, permease protein  33.76 
 
 
266 aa  131  9e-30  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000768374 
 
 
-
 
NC_007952  Bxe_B2705  spermidine/putrescine ABC transporter inner membrane protein  35.68 
 
 
265 aa  128  9.000000000000001e-29  Burkholderia xenovorans LB400  Bacteria  normal  0.628706  normal 
 
 
-
 
NC_008686  Pden_0469  binding-protein-dependent transport systems inner membrane component  34.76 
 
 
261 aa  127  2.0000000000000002e-28  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013923  Nmag_3864  binding-protein-dependent transport systems inner membrane component  30.92 
 
 
279 aa  127  3e-28  Natrialba magadii ATCC 43099  Archaea  normal  0.623194  n/a   
 
 
-
 
NC_010511  M446_4045  binding-protein-dependent transport systems inner membrane component  34.44 
 
 
274 aa  126  3e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.329946  normal 
 
 
-
 
NC_009674  Bcer98_1009  ornithine carbamoyltransferase  32.05 
 
 
266 aa  126  4.0000000000000003e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1871  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
278 aa  125  5e-28  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2228  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
272 aa  125  6e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2420  putative ABC spermidine/putrescine transporter permease protein  33.74 
 
 
281 aa  125  6e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.814446  normal 
 
 
-
 
NC_010625  Bphy_6628  binding-protein-dependent transport systems inner membrane component  33.59 
 
 
264 aa  125  7e-28  Burkholderia phymatum STM815  Bacteria  normal  0.381273  normal 
 
 
-
 
NC_009656  PSPA7_0750  ABC transporter permease  33.18 
 
 
276 aa  125  8.000000000000001e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3230  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
272 aa  125  8.000000000000001e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2541  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
272 aa  125  9e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  0.180027  n/a   
 
 
-
 
NC_012880  Dd703_1788  binding-protein-dependent transport systems inner membrane component  33.5 
 
 
275 aa  124  1e-27  Dickeya dadantii Ech703  Bacteria  normal  0.0709875  n/a   
 
 
-
 
NC_009720  Xaut_2579  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
277 aa  124  1e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  0.715101  normal 
 
 
-
 
NC_013922  Nmag_1787  binding-protein-dependent transport systems inner membrane component  29.34 
 
 
669 aa  124  2e-27  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008463  PA14_07900  putative permease of ABC transporter  32.55 
 
 
276 aa  124  2e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00280578 
 
 
-
 
NC_010681  Bphyt_1894  binding-protein-dependent transport systems inner membrane component  34.92 
 
 
265 aa  123  3e-27  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00977235  normal  0.387076 
 
 
-
 
NC_009668  Oant_4437  binding-protein-dependent transport systems inner membrane component  32.09 
 
 
264 aa  122  4e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4417  binding-protein-dependent transport systems inner membrane component  34.41 
 
 
268 aa  122  5e-27  Polaromonas sp. JS666  Bacteria  normal  0.303148  normal 
 
 
-
 
NC_011662  Tmz1t_0427  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
274 aa  122  5e-27  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4000  binding-protein-dependent transport systems inner membrane component  32.74 
 
 
275 aa  122  6e-27  Pseudomonas mendocina ymp  Bacteria  normal  0.360042  normal 
 
 
-
 
NC_011989  Avi_2708  ABC transporter membrane spanning protein (polyamine)  33.47 
 
 
264 aa  122  7e-27  Agrobacterium vitis S4  Bacteria  normal  0.319241  n/a   
 
 
-
 
NC_011658  BCAH187_A1441  spermidine/putrescine ABC transporter, permease protein  33.33 
 
 
266 aa  121  9.999999999999999e-27  Bacillus cereus AH187  Bacteria  normal  0.0782345  n/a   
 
 
-
 
NC_008391  Bamb_4294  binding-protein-dependent transport systems inner membrane component  30.67 
 
 
279 aa  121  9.999999999999999e-27  Burkholderia ambifaria AMMD  Bacteria  normal  0.144254  normal 
 
 
-
 
NC_004311  BRA1105  polyamine ABC transporter, permease protein  31.22 
 
 
267 aa  120  1.9999999999999998e-26  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1834  ABC transporter, permease protein  30.43 
 
 
269 aa  120  1.9999999999999998e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.632575 
 
 
-
 
NC_009668  Oant_3714  binding-protein-dependent transport systems inner membrane component  32.27 
 
 
264 aa  120  3e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.50413  n/a   
 
 
-
 
NC_011982  Avi_8304  ABC transporter  31.17 
 
 
265 aa  120  3e-26  Agrobacterium vitis S4  Bacteria  normal  0.0178234  n/a   
 
 
-
 
NC_009050  Rsph17029_3639  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
268 aa  119  3.9999999999999996e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.344703 
 
 
-
 
NC_010676  Bphyt_4429  binding-protein-dependent transport systems inner membrane component  34.01 
 
 
264 aa  119  3.9999999999999996e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  0.186422  normal  0.676109 
 
 
-
 
NC_011369  Rleg2_4105  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
262 aa  119  4.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3539  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
264 aa  119  4.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.447694  normal 
 
 
-
 
NC_008391  Bamb_5374  binding-protein-dependent transport systems inner membrane component  32.68 
 
 
264 aa  119  7e-26  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.628457 
 
 
-
 
NC_007948  Bpro_4377  binding-protein-dependent transport systems inner membrane component  32.24 
 
 
265 aa  118  7.999999999999999e-26  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_7052  binding-protein-dependent transport systems inner membrane component  32.94 
 
 
265 aa  118  9e-26  Burkholderia phymatum STM815  Bacteria  normal  normal  0.34418 
 
 
-
 
NC_007509  Bcep18194_C6717  ABC spermidine/putrescine transporter, inner membrane subunit  31.35 
 
 
280 aa  118  9.999999999999999e-26  Burkholderia sp. 383  Bacteria  decreased coverage  0.00799546  normal 
 
 
-
 
NC_010676  Bphyt_6540  binding-protein-dependent transport systems inner membrane component  33.74 
 
 
270 aa  118  9.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.199847 
 
 
-
 
NC_008061  Bcen_4730  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
264 aa  118  9.999999999999999e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.293753  n/a   
 
 
-
 
NC_010086  Bmul_5060  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
264 aa  118  9.999999999999999e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.183233 
 
 
-
 
NC_013922  Nmag_0103  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
275 aa  117  9.999999999999999e-26  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3633  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
264 aa  118  9.999999999999999e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.332864 
 
 
-
 
NC_009439  Pmen_4203  binding-protein-dependent transport systems inner membrane component  34.12 
 
 
284 aa  117  1.9999999999999998e-25  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1221  spermidine/putrescine ABC transporter, permease protein  30.26 
 
 
282 aa  117  1.9999999999999998e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3109  spermidine/putrescine ABC transporter permease  30.26 
 
 
282 aa  117  1.9999999999999998e-25  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1338  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
282 aa  117  1.9999999999999998e-25  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2045  binding-protein dependent transport system inner membrane protein  29.96 
 
 
275 aa  116  3.9999999999999997e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.586316  n/a   
 
 
-
 
NC_007908  Rfer_0887  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
263 aa  116  3.9999999999999997e-25  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0748  polyamine/opine/phosphonate ABC transporter inner membrane protein  33.6 
 
 
264 aa  116  3.9999999999999997e-25  Burkholderia xenovorans LB400  Bacteria  normal  0.467059  normal 
 
 
-
 
NC_007005  Psyr_2333  binding-protein dependent transport system inner membrane protein  32.17 
 
 
264 aa  116  5e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.161709  normal  0.782854 
 
 
-
 
NC_007948  Bpro_3945  binding-protein-dependent transport systems inner membrane component  32.78 
 
 
264 aa  116  5e-25  Polaromonas sp. JS666  Bacteria  normal  0.334886  normal  0.870267 
 
 
-
 
NC_014248  Aazo_3072  binding-protein-dependent transporter inner membrane protein  33.99 
 
 
244 aa  115  6.9999999999999995e-25  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0645  polyamine ABC transporter, permease protein  32.68 
 
 
279 aa  115  6.9999999999999995e-25  Burkholderia thailandensis E264  Bacteria  normal  0.637437  n/a   
 
 
-
 
NC_012852  Rleg_6034  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
259 aa  115  6.9999999999999995e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.958438 
 
 
-
 
NC_012791  Vapar_0306  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
264 aa  115  7.999999999999999e-25  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2359  putative polyamine ABC transporter, permease protein  32.68 
 
 
289 aa  115  8.999999999999998e-25  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2498  putative polyamine ABC transporter, permease protein  32.68 
 
 
289 aa  115  8.999999999999998e-25  Burkholderia pseudomallei 668  Bacteria  normal  0.633965  n/a   
 
 
-
 
NC_004578  PSPTO_2522  ABC transporter, permease protein  31.78 
 
 
264 aa  115  1.0000000000000001e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0812  polyamine ABC transporter, permease protein  32.68 
 
 
279 aa  114  1.0000000000000001e-24  Burkholderia pseudomallei 1710b  Bacteria  normal  0.610714  n/a   
 
 
-
 
NC_004311  BRA0329  spermidine/putrescine ABC transporter, permease protein  31.17 
 
 
258 aa  114  2.0000000000000002e-24  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0303  spermidine/putrescine ABC transporter, permease protein  31.17 
 
 
242 aa  114  2.0000000000000002e-24  Brucella ovis ATCC 25840  Bacteria  normal  0.102873  n/a   
 
 
-
 
NC_007953  Bxe_C1236  ABC spermidine/putrescine transporter, inner membrane subunit  28.99 
 
 
267 aa  114  2.0000000000000002e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.362839  normal 
 
 
-
 
NC_010087  Bmul_6002  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
265 aa  114  2.0000000000000002e-24  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.176391  normal 
 
 
-
 
NC_010622  Bphy_2380  binding-protein-dependent transport systems inner membrane component  28.97 
 
 
279 aa  112  4.0000000000000004e-24  Burkholderia phymatum STM815  Bacteria  normal  0.576146  normal 
 
 
-
 
NC_008786  Veis_0203  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
265 aa  112  5e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.973641  normal  0.52762 
 
 
-
 
NC_011368  Rleg2_4995  binding-protein-dependent transport systems inner membrane component  31.74 
 
 
265 aa  112  5e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.887799  normal 
 
 
-
 
NC_008786  Veis_4754  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
264 aa  112  5e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3207  binding-protein-dependent transport systems inner membrane component  32.28 
 
 
264 aa  112  6e-24  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6885  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
279 aa  112  6e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  0.471707  normal  0.190136 
 
 
-
 
NC_008463  PA14_04230  putative permease of ABC transporter  32.07 
 
 
262 aa  112  6e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1647  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
262 aa  112  6e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.29435 
 
 
-
 
NC_010501  PputW619_4788  binding-protein-dependent transport systems inner membrane component  29.91 
 
 
275 aa  112  7.000000000000001e-24  Pseudomonas putida W619  Bacteria  normal  normal  0.776443 
 
 
-
 
NC_007492  Pfl01_5122  binding-protein dependent transport system inner membrane protein  31.16 
 
 
274 aa  112  8.000000000000001e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.026759  normal  0.638371 
 
 
-
 
NC_009767  Rcas_2838  ornithine carbamoyltransferase  33.33 
 
 
286 aa  112  9e-24  Roseiflexus castenholzii DSM 13941  Bacteria  hitchhiker  0.000365648  normal 
 
 
-
 
NC_007948  Bpro_2916  binding-protein-dependent transport systems inner membrane component  31.78 
 
 
274 aa  112  9e-24  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_5055  binding-protein dependent transport system inner membrane protein  31.71 
 
 
264 aa  111  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.429894 
 
 
-
 
NC_013923  Nmag_3854  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
273 aa  111  1.0000000000000001e-23  Natrialba magadii ATCC 43099  Archaea  normal  0.181021  n/a   
 
 
-
 
NC_010627  Bphy_7801  binding-protein-dependent transport systems inner membrane component  32.07 
 
 
284 aa  110  2.0000000000000002e-23  Burkholderia phymatum STM815  Bacteria  normal  0.109099  normal 
 
 
-
 
NC_008786  Veis_0786  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
265 aa  110  2.0000000000000002e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0448  binding-protein-dependent transport systems inner membrane component  31.63 
 
 
275 aa  110  2.0000000000000002e-23  Pseudomonas putida F1  Bacteria  normal  normal  0.439073 
 
 
-
 
NC_010322  PputGB1_0445  binding-protein-dependent transport systems inner membrane component  31.63 
 
 
275 aa  110  2.0000000000000002e-23  Pseudomonas putida GB-1  Bacteria  normal  normal  0.355956 
 
 
-
 
NC_010623  Bphy_4324  binding-protein-dependent transport systems inner membrane component  32.26 
 
 
279 aa  110  2.0000000000000002e-23  Burkholderia phymatum STM815  Bacteria  normal  normal  0.644272 
 
 
-
 
NC_007802  Jann_3236  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
262 aa  110  2.0000000000000002e-23  Jannaschia sp. CCS1  Bacteria  normal  0.0387101  normal  0.554966 
 
 
-
 
NC_007952  Bxe_B2930  spermidine/putrescine ABC transporter inner membrane protein  32.77 
 
 
279 aa  110  2.0000000000000002e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4679  binding-protein-dependent transport systems inner membrane component  33.74 
 
 
287 aa  110  3e-23  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
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