Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2838 |
Symbol | |
ID | 5540327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3679327 |
End bp | 3680187 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640894967 |
Product | ornithine carbamoyltransferase |
Protein accession | YP_001432927 |
Protein GI | 156742798 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000365648 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATCGATG CCCAAACAAC ACAATCGCTC CGTGTCGTCG GGGGTGAGCG CCGCCGTTCT CTCGGTTCGC TGGCGCTCGG CATGCACACC GTCCTGACAC TGGCGTTCCT CTATGCGCCC ATCGTGGTGC TGGTGCTCTT CTCATTCACG CGCGACAGTT TCGGCGTGCG CTGGACGGGG TTCACCTTCG ATTGGTATGC GCGGCTGCTT GCCGATCAGC GCCTGCTCAC AGCGGCGATG AACACCCTCA TTGTGGCGCT GGTATCGACT GTGGTTTCGA CGATTATTGG AACGATGACT GCGCTGGCGA TGGAGCGCTA CCGCTTTCGC TGGCGCACCG GTTTCGACGC GCTCCTCTAT CTGCCTATCG TTATCCCGGA GATCGTGATG GCGCTGGCGC TGCTGGCGTT CTTCGCTTTC TCCTTTGGGC TGCTCGAAAC CTTGTTCGGT ATCCGTTTGC AGTTTGGTCT GGCGACGGTT ACTATTGCGC ATATCGCTTT CACGATTTCA TTCGTGGTCG TTGTCGTGCG CGCCAGTCTC AAGGGGTTCG ACATGCGTCT GGAAGAAGCG GCGCAGGACC TTGGCGCAAA TGAGTGGCAG ACGTTTCGCT ATATTACGCT GCCGCTCATC ATGCCGGGTG TGATCGGCGG AGCGCTGCTC GCGTTTACCC TCTCGCTCGA CGATTTTGTG ATCACCTTCT TCACCACCGG CTCCGGCGTC TCGTTGTTGC CGGTCGAAGT GTACGGACAG GTCAAACGCG CCATTACGCC GAAGATCAAC GCCATTTCGA CCCTGATGCT GCTGGTGTCG ATCACCCTGG TGTTCCTCTC GCAATTCGTG CAGCGTCGGC GGGAGATATG A
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Protein sequence | MIDAQTTQSL RVVGGERRRS LGSLALGMHT VLTLAFLYAP IVVLVLFSFT RDSFGVRWTG FTFDWYARLL ADQRLLTAAM NTLIVALVST VVSTIIGTMT ALAMERYRFR WRTGFDALLY LPIVIPEIVM ALALLAFFAF SFGLLETLFG IRLQFGLATV TIAHIAFTIS FVVVVVRASL KGFDMRLEEA AQDLGANEWQ TFRYITLPLI MPGVIGGALL AFTLSLDDFV ITFFTTGSGV SLLPVEVYGQ VKRAITPKIN AISTLMLLVS ITLVFLSQFV QRRREI
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