More than 300 homologs were found in PanDaTox collection
for query gene DvMF_1232 on replicon NC_011769
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011769  DvMF_1232  formate dehydrogenase accessory protein FdhD, putative  100 
 
 
274 aa  538  9.999999999999999e-153  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0303539 
 
 
-
 
NC_008751  Dvul_2374  formate dehydrogenase, subunit FdhD  55.6 
 
 
262 aa  267  1e-70  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0707  formate dehydrogenase accessory protein FdhD, putative  53.23 
 
 
239 aa  234  2.0000000000000002e-60  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2410  formate dehydrogenase subunit FdhD  41.86 
 
 
240 aa  174  9.999999999999999e-43  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.038103 
 
 
-
 
NC_008148  Rxyl_0145  formate dehydrogenase family accessory protein FdhD  42.34 
 
 
289 aa  91.3  2e-17  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3385  formate dehydrogenase family accessory protein FdhD  30.7 
 
 
483 aa  88.6  1e-16  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2817  formate dehydrogenase family accessory protein FdhD  32.57 
 
 
255 aa  87.4  2e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_2990  formate dehydrogenase family accessory protein FdhD  41.35 
 
 
255 aa  87  3e-16  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.68227e-19 
 
 
-
 
NC_007517  Gmet_1062  formate dehydrogenase, subunit FdhD  39.29 
 
 
479 aa  86.3  4e-16  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0656292 
 
 
-
 
NC_013595  Sros_1325  formate dehydrogenase  42.98 
 
 
282 aa  85.5  7e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.201918 
 
 
-
 
NC_007575  Suden_0817  formate dehydrogenase accessory protein  35.38 
 
 
276 aa  85.5  8e-16  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.0766349  n/a   
 
 
-
 
NC_014212  Mesil_2130  formate dehydrogenase family accessory protein FdhD  42.19 
 
 
283 aa  85.5  8e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  0.455912  normal  0.581272 
 
 
-
 
NC_007498  Pcar_1840  formate dehydrogenase accessory protein  26.25 
 
 
268 aa  84.7  0.000000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00380429  n/a   
 
 
-
 
NC_009707  JJD26997_1860  formate dehydrogenase accessory protein  27.27 
 
 
260 aa  84.3  0.000000000000002  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1293  formate dehydrogenase family accessory protein FdhD  40.91 
 
 
255 aa  84.7  0.000000000000002  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.0000222407  n/a   
 
 
-
 
NC_011146  Gbem_2264  formate dehydrogenase family accessory protein FdhD  44 
 
 
468 aa  84  0.000000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1958  formate dehydrogenase family accessory protein FdhD  44 
 
 
468 aa  83.2  0.000000000000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1437  formate dehydrogenase family accessory protein FdhD  32.39 
 
 
255 aa  83.2  0.000000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3370  formate dehydrogenase family accessory protein FdhD  41.82 
 
 
487 aa  82.4  0.000000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0780  formate dehydrogenase accessory protein FdhD  40.18 
 
 
478 aa  82  0.000000000000009  Geobacter sulfurreducens PCA  Bacteria  normal  0.162723  n/a   
 
 
-
 
NC_009802  CCC13826_0211  formate dehydrogenase accessory protein  25 
 
 
260 aa  82  0.00000000000001  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2010  formate dehydrogenase family accessory protein FdhD  38.6 
 
 
248 aa  80.9  0.00000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.068526  n/a   
 
 
-
 
NC_007964  Nham_3132  formate dehydrogenase family accessory protein FdhD  35.04 
 
 
296 aa  80.1  0.00000000000004  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0667  formate dehydrogenase, subunit FdhD  43.69 
 
 
320 aa  79.7  0.00000000000004  Acidothermus cellulolyticus 11B  Bacteria  normal  0.187577  normal 
 
 
-
 
NC_009051  Memar_1911  formate dehydrogenase family accessory protein FdhD  31.25 
 
 
249 aa  79.3  0.00000000000006  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_003912  CJE1681  formate dehydrogenase accessory protein  26.69 
 
 
260 aa  79.3  0.00000000000007  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0784  formate dehydrogenase family accessory protein FdhD  35.71 
 
 
299 aa  79  0.00000000000008  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2431  formate dehydrogenase family accessory protein FdhD  35.29 
 
 
297 aa  79  0.00000000000008  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_1500  formate dehydrogenase accessory protein  26.69 
 
 
260 aa  79  0.00000000000008  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  0.919736  n/a   
 
 
-
 
NC_011726  PCC8801_0758  formate dehydrogenase family accessory protein FdhD  35.71 
 
 
299 aa  79  0.00000000000009  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_3534  formate dehydrogenase family accessory protein FdhD  44.12 
 
 
284 aa  77.4  0.0000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1058  formate dehydrogenase family accessory protein FdhD  31.18 
 
 
264 aa  77.8  0.0000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_2060  formate dehydrogenase family accessory protein FdhD  26 
 
 
262 aa  77.8  0.0000000000002  Sulfurospirillum deleyianum DSM 6946  Bacteria  decreased coverage  0.0000863556  n/a   
 
 
-
 
NC_008010  Dgeo_2744  formate dehydrogenase family accessory protein FdhD  38.78 
 
 
251 aa  77  0.0000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3682  formate dehydrogenase subunit FdhD  38.84 
 
 
279 aa  76.3  0.0000000000005  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2076  formate dehydrogenase, subunit FdhD  39.81 
 
 
263 aa  75.9  0.0000000000006  Geobacter metallireducens GS-15  Bacteria  hitchhiker  9.82479e-16  normal 
 
 
-
 
NC_008553  Mthe_0035  formate dehydrogenase family accessory protein FdhD  35.66 
 
 
238 aa  75.9  0.0000000000007  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2852  formate dehydrogenase accessory protein  36.96 
 
 
271 aa  75.5  0.0000000000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.743331  normal  0.675793 
 
 
-
 
NC_011666  Msil_3657  formate dehydrogenase family accessory protein FdhD  40.5 
 
 
285 aa  75.5  0.0000000000009  Methylocella silvestris BL2  Bacteria  n/a    normal  0.299486 
 
 
-
 
NC_014210  Ndas_4114  formate dehydrogenase family accessory protein FdhD  42.16 
 
 
293 aa  74.7  0.000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1343  formate dehydrogenase accessory protein  38.18 
 
 
263 aa  75.1  0.000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009720  Xaut_3478  formate dehydrogenase family accessory protein FdhD  37.21 
 
 
292 aa  75.1  0.000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.739751  normal  0.474196 
 
 
-
 
NC_013169  Ksed_15020  formate dehydrogenase family accessory protein FdhD  39.42 
 
 
281 aa  74.7  0.000000000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.503102  normal 
 
 
-
 
NC_009712  Mboo_2122  formate dehydrogenase family accessory protein FdhD  35.29 
 
 
259 aa  74.7  0.000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.545765  normal 
 
 
-
 
NC_009654  Mmwyl1_3012  formate dehydrogenase family accessory protein FdhD  31.94 
 
 
290 aa  74.3  0.000000000002  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.492307 
 
 
-
 
NC_009049  Rsph17029_2742  formate dehydrogenase accessory protein  38.41 
 
 
271 aa  74.3  0.000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.455642 
 
 
-
 
NC_013946  Mrub_1914  formate dehydrogenase family accessory protein FdhD  36.07 
 
 
285 aa  74.3  0.000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.84446  hitchhiker  0.0000450272 
 
 
-
 
NC_005945  BAS3364  formate dehydrogenase accessory protein  23.57 
 
 
265 aa  73.6  0.000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.144836  n/a   
 
 
-
 
NC_007530  GBAA_3628  formate dehydrogenase accessory protein  23.57 
 
 
265 aa  73.6  0.000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_2346  formate dehydrogenase family accessory protein FdhD  36.51 
 
 
284 aa  73.9  0.000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.36394  n/a   
 
 
-
 
NC_005957  BT9727_3328  formate dehydrogenase accessory protein  23.57 
 
 
265 aa  73.6  0.000000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0183588  n/a   
 
 
-
 
NC_011773  BCAH820_3578  formate dehydrogenase accessory protein  22.14 
 
 
265 aa  73.2  0.000000000004  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_3585  formate dehydrogenase accessory protein  23.57 
 
 
265 aa  72.8  0.000000000005  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009635  Maeo_1248  formate dehydrogenase family accessory protein FdhD  28.24 
 
 
249 aa  72.8  0.000000000005  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A3595  formate dehydrogenase accessory protein  23.57 
 
 
265 aa  72.4  0.000000000007  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5485  formate dehydrogenase family accessory protein FdhD  32.61 
 
 
290 aa  72.4  0.000000000007  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008942  Mlab_0990  hypothetical protein  36.04 
 
 
506 aa  72.4  0.000000000007  Methanocorpusculum labreanum Z  Archaea  normal  normal  0.663742 
 
 
-
 
NC_003910  CPS_4025  formate dehydrogenase accessory protein FdhD  28.76 
 
 
283 aa  72.4  0.000000000008  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3278  formate dehydrogenase accessory protein  23.19 
 
 
265 aa  72.4  0.000000000008  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1081  formate dehydrogenase accessory protein  37.68 
 
 
271 aa  72.4  0.000000000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4073  formate dehydrogenase family accessory protein FdhD  37.72 
 
 
280 aa  72.4  0.000000000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.110434  normal  0.0860258 
 
 
-
 
NC_011886  Achl_3467  formate dehydrogenase family accessory protein FdhD  39.62 
 
 
294 aa  71.6  0.00000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008786  Veis_2382  formate dehydrogenase family accessory protein FdhD  24.91 
 
 
277 aa  71.6  0.00000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_1216  formate dehydrogenase family accessory protein FdhD  35.19 
 
 
261 aa  72  0.00000000001  Methanosphaerula palustris E1-9c  Archaea  normal  0.944709  normal  0.100536 
 
 
-
 
NC_009632  SaurJH1_2347  formate dehydrogenase accessory protein  29.57 
 
 
265 aa  71.2  0.00000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2665  formate dehydrogenase family accessory protein FdhD  34.21 
 
 
275 aa  71.6  0.00000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A3678  formate dehydrogenase accessory protein  24.62 
 
 
265 aa  71.6  0.00000000001  Bacillus cereus B4264  Bacteria  normal  0.688402  n/a   
 
 
-
 
NC_013525  Tter_0989  formate dehydrogenase family accessory protein FdhD  25.75 
 
 
266 aa  71.6  0.00000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_0466  formate dehydrogenase accessory protein  31.82 
 
 
262 aa  71.6  0.00000000001  Geobacillus sp. WCH70  Bacteria  normal  0.276769  n/a   
 
 
-
 
NC_009487  SaurJH9_2305  formate dehydrogenase accessory protein  29.57 
 
 
265 aa  71.2  0.00000000001  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_1030  formate dehydrogenase accessory protein  36.45 
 
 
263 aa  71.6  0.00000000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0919  formate dehydrogenase family accessory protein FdhD  37.3 
 
 
292 aa  71.6  0.00000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013093  Amir_1157  formate dehydrogenase family accessory protein FdhD  39.42 
 
 
274 aa  71.6  0.00000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4473  formate dehydrogenase family accessory protein FdhD  37.82 
 
 
276 aa  71.6  0.00000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.979472  n/a   
 
 
-
 
NC_013385  Adeg_0152  formate dehydrogenase subunit FdhD  29.85 
 
 
228 aa  71.2  0.00000000002  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00000189398  n/a   
 
 
-
 
NC_013216  Dtox_3374  formate dehydrogenase family accessory protein FdhD  41.98 
 
 
260 aa  70.9  0.00000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3339  formate dehydrogenase family accessory protein FdhD  36.73 
 
 
297 aa  71.2  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.224084 
 
 
-
 
NC_011004  Rpal_0806  formate dehydrogenase accessory protein  36.67 
 
 
276 aa  70.5  0.00000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0479  formate dehydrogenase family accessory protein FdhD  35.78 
 
 
233 aa  70.1  0.00000000003  Methanococcus maripaludis C7  Archaea  normal  0.161878  normal 
 
 
-
 
NC_007796  Mhun_2204  formate dehydrogenase family accessory protein FdhD  38.75 
 
 
254 aa  70.5  0.00000000003  Methanospirillum hungatei JF-1  Archaea  normal  0.154366  normal  0.450296 
 
 
-
 
NC_013204  Elen_2451  formate dehydrogenase family accessory protein FdhD  37.21 
 
 
281 aa  70.5  0.00000000003  Eggerthella lenta DSM 2243  Bacteria  normal  0.0979035  normal 
 
 
-
 
NC_008043  TM1040_3756  formate dehydrogenase family accessory protein FdhD  28.14 
 
 
293 aa  70.5  0.00000000003  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_2876  formate dehydrogenase family accessory protein FdhD  34.23 
 
 
262 aa  70.1  0.00000000004  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0487293  n/a   
 
 
-
 
NC_009135  MmarC5_0358  formate dehydrogenase family accessory protein FdhD  34.86 
 
 
233 aa  70.1  0.00000000004  Methanococcus maripaludis C5  Archaea  normal  0.304436  n/a   
 
 
-
 
NC_013159  Svir_12240  formate dehydrogenase family accessory protein FdhD  35.71 
 
 
272 aa  70.1  0.00000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0547  formate dehydrogenase family accessory protein FdhD  36.36 
 
 
237 aa  69.7  0.00000000005  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1440  formate dehydrogenase family accessory protein FdhD  33.94 
 
 
233 aa  69.7  0.00000000005  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_008782  Ajs_3459  formate dehydrogenase, subunit FdhD  30.72 
 
 
296 aa  69.7  0.00000000005  Acidovorax sp. JS42  Bacteria  normal  normal  0.215556 
 
 
-
 
NC_007796  Mhun_2019  formate dehydrogenase family accessory protein FdhD  32.03 
 
 
260 aa  69.3  0.00000000006  Methanospirillum hungatei JF-1  Archaea  normal  0.948078  normal 
 
 
-
 
NC_011992  Dtpsy_2786  formate dehydrogenase subunit FdhD  30.72 
 
 
296 aa  68.9  0.00000000007  Acidovorax ebreus TPSY  Bacteria  normal  0.0374953  n/a   
 
 
-
 
NC_011772  BCG9842_B1639  formate dehydrogenase accessory protein  28.57 
 
 
223 aa  69.3  0.00000000007  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2115  formate dehydrogenase family accessory protein FdhD  37.93 
 
 
273 aa  68.9  0.00000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0802  formate dehydrogenase family accessory protein FdhD  38.98 
 
 
309 aa  68.9  0.00000000008  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_0406  formate dehydrogenase family accessory protein FdhD  33.93 
 
 
284 aa  68.9  0.00000000009  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3723  formate dehydrogenase family accessory protein FdhD  26.37 
 
 
303 aa  68.2  0.0000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.521477 
 
 
-
 
NC_013947  Snas_0300  formate dehydrogenase family accessory protein FdhD  39.81 
 
 
268 aa  68.6  0.0000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2593  formate dehydrogenase accessory protein  35 
 
 
278 aa  68.6  0.0000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4057  formate dehydrogenase, subunit FdhD  30.61 
 
 
290 aa  68.2  0.0000000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1033  formate dehydrogenase family accessory protein FdhD  33.33 
 
 
266 aa  68.2  0.0000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0364714  n/a   
 
 
-
 
NC_010682  Rpic_2580  formate dehydrogenase subunit FdhD  30.83 
 
 
291 aa  68.6  0.0000000001  Ralstonia pickettii 12J  Bacteria  normal  0.437396  normal  0.264505 
 
 
-
 
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