More than 300 homologs were found in PanDaTox collection
for query gene Dret_1071 on replicon NC_013223
Organism: Desulfohalobium retbaense DSM 5692



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013223  Dret_1071  carbamoyl-phosphate synthase, small subunit  100 
 
 
369 aa  770    Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0749952  normal  0.228018 
 
 
-
 
NC_008751  Dvul_0268  carbamoyl phosphate synthase small subunit  62.33 
 
 
375 aa  477  1e-133  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.583908 
 
 
-
 
NC_013173  Dbac_0133  carbamoyl-phosphate synthase, small subunit  59.95 
 
 
378 aa  473  1e-132  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2370  carbamoyl phosphate synthase small subunit  60.81 
 
 
376 aa  466  9.999999999999999e-131  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.82733 
 
 
-
 
NC_007519  Dde_3646  carbamoyl phosphate synthase small subunit  59.89 
 
 
375 aa  464  1e-129  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1097  carbamoyl phosphate synthase small subunit  57.14 
 
 
376 aa  426  1e-118  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.643284  n/a   
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  54.93 
 
 
380 aa  422  1e-117  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  56.84 
 
 
376 aa  419  1e-116  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  54.55 
 
 
373 aa  406  1.0000000000000001e-112  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  55.35 
 
 
374 aa  402  1e-111  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  54.28 
 
 
374 aa  402  1e-111  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  54.2 
 
 
391 aa  402  1e-111  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  52.67 
 
 
374 aa  398  9.999999999999999e-111  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  55.08 
 
 
373 aa  400  9.999999999999999e-111  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  52.41 
 
 
374 aa  397  1e-109  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  54.81 
 
 
373 aa  388  1e-106  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  52.83 
 
 
386 aa  381  1e-104  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  52.57 
 
 
373 aa  379  1e-104  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  52.57 
 
 
373 aa  378  1e-103  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  52.57 
 
 
373 aa  376  1e-103  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  52.43 
 
 
386 aa  378  1e-103  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  52.86 
 
 
383 aa  374  1e-102  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  50.95 
 
 
377 aa  372  1e-102  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  52.69 
 
 
369 aa  369  1e-101  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  50.68 
 
 
372 aa  370  1e-101  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  51.89 
 
 
373 aa  369  1e-101  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  50.82 
 
 
372 aa  365  1e-100  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  50.54 
 
 
359 aa  365  1e-100  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_009972  Haur_4242  carbamoyl-phosphate synthase, small subunit  51.08 
 
 
376 aa  367  1e-100  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  51.75 
 
 
379 aa  365  1e-100  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  51.88 
 
 
369 aa  364  1e-99  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  50.82 
 
 
391 aa  363  3e-99  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_010424  Daud_1303  carbamoyl-phosphate synthase, small subunit  50.14 
 
 
359 aa  363  4e-99  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0780078  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  48.92 
 
 
381 aa  362  4e-99  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  49.47 
 
 
381 aa  362  7.0000000000000005e-99  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  50.82 
 
 
359 aa  361  1e-98  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  52.69 
 
 
366 aa  361  1e-98  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  49.73 
 
 
389 aa  359  5e-98  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  46.12 
 
 
392 aa  358  6e-98  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  46.12 
 
 
392 aa  358  9.999999999999999e-98  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  48.66 
 
 
384 aa  358  9.999999999999999e-98  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  51.08 
 
 
369 aa  357  9.999999999999999e-98  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  50.41 
 
 
377 aa  358  9.999999999999999e-98  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  51.08 
 
 
367 aa  357  1.9999999999999998e-97  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  48.5 
 
 
356 aa  356  2.9999999999999997e-97  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  51.49 
 
 
374 aa  356  3.9999999999999996e-97  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  49.87 
 
 
401 aa  355  5.999999999999999e-97  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  50.41 
 
 
378 aa  355  6.999999999999999e-97  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1361  carbamoyl phosphate synthase small subunit  48.81 
 
 
376 aa  354  1e-96  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0950  carbamoyl-phosphate synthase small subunit  49.18 
 
 
357 aa  354  2e-96  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  48.78 
 
 
358 aa  353  2.9999999999999997e-96  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  50.13 
 
 
386 aa  353  2.9999999999999997e-96  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  50 
 
 
390 aa  353  2.9999999999999997e-96  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  50 
 
 
396 aa  351  8.999999999999999e-96  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  48.67 
 
 
385 aa  351  8.999999999999999e-96  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  47.98 
 
 
380 aa  351  1e-95  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  47.98 
 
 
380 aa  351  1e-95  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  48.31 
 
 
397 aa  351  1e-95  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  49.6 
 
 
386 aa  350  2e-95  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  50.27 
 
 
383 aa  350  2e-95  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  48.15 
 
 
393 aa  349  4e-95  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  49.87 
 
 
385 aa  348  6e-95  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  49.59 
 
 
378 aa  348  6e-95  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  49.59 
 
 
393 aa  348  7e-95  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  48.37 
 
 
440 aa  348  9e-95  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  49.19 
 
 
371 aa  348  1e-94  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  48.79 
 
 
379 aa  347  2e-94  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  47.87 
 
 
381 aa  347  2e-94  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  48.91 
 
 
378 aa  347  2e-94  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_009997  Sbal195_3526  carbamoyl phosphate synthase small subunit  50.4 
 
 
386 aa  346  4e-94  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3305  carbamoyl phosphate synthase small subunit  50.13 
 
 
386 aa  346  4e-94  Shewanella baltica OS155  Bacteria  normal  0.314757  n/a   
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  48.78 
 
 
361 aa  346  5e-94  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  48.82 
 
 
398 aa  345  6e-94  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  49.06 
 
 
378 aa  345  6e-94  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  49.33 
 
 
379 aa  345  6e-94  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  47.44 
 
 
379 aa  345  7e-94  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_009665  Shew185_3401  carbamoyl phosphate synthase small subunit  50.13 
 
 
391 aa  345  8e-94  Shewanella baltica OS185  Bacteria  hitchhiker  0.00720177  n/a   
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  48.41 
 
 
388 aa  345  8.999999999999999e-94  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_011663  Sbal223_1051  carbamoyl phosphate synthase small subunit  50.13 
 
 
387 aa  345  1e-93  Shewanella baltica OS223  Bacteria  normal  0.098868  hitchhiker  0.0000017806 
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  48.41 
 
 
416 aa  344  1e-93  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  47.89 
 
 
382 aa  344  1e-93  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  48.27 
 
 
382 aa  344  2e-93  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  48.27 
 
 
391 aa  344  2e-93  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1915  carbamoyl-phosphate synthase, small subunit  46.32 
 
 
390 aa  344  2e-93  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0878  carbamoyl-phosphate synthase, small subunit  48.63 
 
 
378 aa  343  2e-93  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3203  carbamoyl-phosphate synthase, small subunit  50.4 
 
 
368 aa  344  2e-93  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  48.92 
 
 
387 aa  344  2e-93  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_009455  DehaBAV1_1011  carbamoyl phosphate synthase small subunit  45.75 
 
 
364 aa  343  2e-93  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0965  carbamoyl phosphate synthase small subunit  50.13 
 
 
386 aa  343  2e-93  Shewanella sp. MR-4  Bacteria  normal  0.0738044  normal 
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  49.33 
 
 
386 aa  343  2.9999999999999997e-93  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  48.27 
 
 
382 aa  343  2.9999999999999997e-93  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  47.73 
 
 
382 aa  343  2.9999999999999997e-93  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_008322  Shewmr7_1003  carbamoyl phosphate synthase small subunit  50.13 
 
 
386 aa  343  2.9999999999999997e-93  Shewanella sp. MR-7  Bacteria  normal  0.0354323  normal 
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  50.4 
 
 
386 aa  343  2.9999999999999997e-93  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  47.73 
 
 
382 aa  343  2.9999999999999997e-93  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  48.96 
 
 
394 aa  343  2.9999999999999997e-93  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  47.73 
 
 
382 aa  342  4e-93  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  49.06 
 
 
378 aa  342  4e-93  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  48.14 
 
 
381 aa  343  4e-93  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_012892  B21_00035  hypothetical protein  47.73 
 
 
382 aa  342  4e-93  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
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