More than 300 homologs were found in PanDaTox collection
for query gene Dde_3609 on replicon NC_007519
Organism: Desulfovibrio desulfuricans subsp. desulfuricans str. G20



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007519  Dde_3609  response regulator receiver domain-containing protein  100 
 
 
122 aa  241  1.9999999999999999e-63  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2332  response regulator receiver protein  77.87 
 
 
122 aa  191  2e-48  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_2829  response regulator receiver protein  76.27 
 
 
126 aa  181  3e-45  Desulfovibrio vulgaris DP4  Bacteria  normal  0.597834  normal 
 
 
-
 
NC_008554  Sfum_0187  response regulator receiver protein  61.16 
 
 
122 aa  140  4e-33  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.283319  normal 
 
 
-
 
NC_013173  Dbac_1110  response regulator receiver protein  59.48 
 
 
117 aa  130  3.9999999999999996e-30  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0458  response regulator receiver protein  42.98 
 
 
120 aa  112  1.0000000000000001e-24  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.000275929  n/a   
 
 
-
 
NC_009483  Gura_0854  response regulator receiver protein  46.9 
 
 
124 aa  98.6  3e-20  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0029  response regulator receiver protein  42.24 
 
 
126 aa  94.7  4e-19  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0406  response regulator receiver protein  41.88 
 
 
126 aa  94  7e-19  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2959  two component signal transduction response regulator  42.74 
 
 
128 aa  92.8  1e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.888929  n/a   
 
 
-
 
NC_011146  Gbem_3403  response regulator receiver protein  43.1 
 
 
124 aa  93.2  1e-18  Geobacter bemidjiensis Bem  Bacteria  normal  0.809384  n/a   
 
 
-
 
NC_002939  GSU3253  response regulator  44.83 
 
 
123 aa  92.4  2e-18  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3179  response regulator receiver domain-containing protein  45.3 
 
 
120 aa  92.4  2e-18  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.164981 
 
 
-
 
NC_012918  GM21_3466  response regulator receiver protein  42.24 
 
 
125 aa  91.7  3e-18  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011206  Lferr_0029  two component, sigma54 specific, transcriptional regulator, Fis family  38.71 
 
 
455 aa  87.8  5e-17  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.59486  normal  0.125276 
 
 
-
 
NC_011761  AFE_0027  sigma-54 dependent transcriptional regulator/response regulator  38.71 
 
 
455 aa  87.8  5e-17  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0460  response regulator receiver protein  44.07 
 
 
119 aa  86.3  1e-16  Thermosipho melanesiensis BI429  Bacteria  normal  0.903697  n/a   
 
 
-
 
NC_010003  Pmob_1627  response regulator receiver protein  40.35 
 
 
119 aa  85.9  2e-16  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1423  response regulator receiver protein  48.28 
 
 
116 aa  84  6e-16  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1469  response regulator receiver protein  48.28 
 
 
116 aa  84  6e-16  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1426  response regulator receiver protein  40.52 
 
 
118 aa  79.7  0.00000000000001  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_5048  nitrogen metabolism transcriptional regulator NtrC  38.02 
 
 
478 aa  77  0.00000000000009  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4923  nitrogen metabolism transcriptional regulator NtrC  38.02 
 
 
478 aa  77  0.00000000000009  Pseudomonas putida F1  Bacteria  normal  0.924842  normal 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  38.46 
 
 
470 aa  76.6  0.00000000000009  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_010501  PputW619_0415  nitrogen metabolism transcriptional regulator, NtrC, Fis family  38.02 
 
 
478 aa  76.6  0.0000000000001  Pseudomonas putida W619  Bacteria  normal  normal  0.855382 
 
 
-
 
NC_004578  PSPTO_0352  nitrogen regulation protein NR(I)  37.19 
 
 
478 aa  75.5  0.0000000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4822  helix-turn-helix, Fis-type:nitrogen regulation protein NR(I)  37.19 
 
 
478 aa  75.5  0.0000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0339  nitrogen metabolism transcriptional regulator, NtrC, Fis family  37.19 
 
 
478 aa  75.5  0.0000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  37.19 
 
 
457 aa  74.7  0.0000000000004  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5101  nitrogen metabolism transcriptional regulator NtrC  38.02 
 
 
478 aa  74.7  0.0000000000004  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0866  two component, sigma54 specific, Fis family transcriptional regulator  41.13 
 
 
496 aa  74.3  0.0000000000005  Acidovorax citrulli AAC00-1  Bacteria  normal  0.555974  normal  0.133337 
 
 
-
 
NC_011884  Cyan7425_1745  response regulator receiver protein  36.21 
 
 
126 aa  73.9  0.0000000000008  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_2406  response regulator receiver domain-containing protein  38.14 
 
 
124 aa  73.6  0.0000000000008  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2061  response regulator receiver modulated diguanylate cyclase  37.29 
 
 
318 aa  73.6  0.0000000000009  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000000365539  n/a   
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  36.36 
 
 
457 aa  72.4  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3345  two component, sigma54 specific, Fis family transcriptional regulator  38.46 
 
 
483 aa  72  0.000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_67680  two-component response regulator NtrC  36.36 
 
 
476 aa  72.4  0.000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000437551  normal 
 
 
-
 
NC_012560  Avin_45900  nitrogen regulation protein, sigma 54-dependent response regulator NtrC (NR(I))  35.54 
 
 
478 aa  72  0.000000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5859  two-component response regulator NtrC  36.36 
 
 
476 aa  72  0.000000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.421071  n/a   
 
 
-
 
NC_009565  TBFG_13797  two component transcriptional regulatory protein  37.04 
 
 
286 aa  71.2  0.000000000005  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.173423 
 
 
-
 
NC_007925  RPC_0827  acetoacetate metabolism regulatory protein AtoC  37.1 
 
 
460 aa  71.2  0.000000000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.158461 
 
 
-
 
NC_013947  Snas_5144  two component transcriptional regulator, winged helix family  32.76 
 
 
236 aa  70.5  0.000000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.204078  normal  0.858106 
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
448 aa  70.5  0.000000000008  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4144  nitrogen metabolism transcriptional regulator, NtrC, Fis family  36.07 
 
 
477 aa  70.5  0.000000000008  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  36.52 
 
 
454 aa  70.5  0.000000000008  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_21620  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  34.48 
 
 
238 aa  69.7  0.00000000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.019443  normal  0.0473518 
 
 
-
 
NC_007333  Tfu_0257  response regulator receiver  35.14 
 
 
241 aa  70.1  0.00000000001  Thermobifida fusca YX  Bacteria  normal  0.926332  n/a   
 
 
-
 
NC_013131  Caci_0904  two component transcriptional regulator, winged helix family  37.82 
 
 
254 aa  69.7  0.00000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.936287  normal  0.32173 
 
 
-
 
NC_011757  Mchl_0182  two component transcriptional regulator, winged helix family  38.53 
 
 
248 aa  69.3  0.00000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.745426 
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  35 
 
 
456 aa  70.1  0.00000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0237  response regulator receiver  38.53 
 
 
248 aa  70.1  0.00000000001  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2177  response regulator receiver protein  35.9 
 
 
120 aa  69.3  0.00000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2784  response regulator receiver protein  35.54 
 
 
125 aa  69.3  0.00000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.0945133  n/a   
 
 
-
 
NC_007513  Syncc9902_1771  two component transcriptional regulator  34.48 
 
 
244 aa  68.9  0.00000000002  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0751  two component, sigma54 specific, Fis family transcriptional regulator  35.54 
 
 
485 aa  68.9  0.00000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0880271  normal 
 
 
-
 
NC_008009  Acid345_3356  two component, sigma54 specific, Fis family transcriptional regulator  35.77 
 
 
484 aa  68.6  0.00000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2940  two component, sigma54 specific, transcriptional regulator, Fis family  37.07 
 
 
502 aa  68.9  0.00000000002  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1017  two component transcriptional regulator  35.54 
 
 
229 aa  69.3  0.00000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.957911  normal  0.735899 
 
 
-
 
NC_008782  Ajs_3630  two component, sigma54 specific, Fis family transcriptional regulator  37.07 
 
 
502 aa  68.9  0.00000000002  Acidovorax sp. JS42  Bacteria  normal  0.670707  normal 
 
 
-
 
NC_011658  BCAH187_A5433  DNA-binding response regulator  39.47 
 
 
223 aa  68.6  0.00000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5379  DNA-binding response regulator  39.47 
 
 
223 aa  68.2  0.00000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3178  response regulator receiver protein  36.21 
 
 
135 aa  68.6  0.00000000003  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00591737  n/a   
 
 
-
 
NC_011772  BCG9842_B5569  DNA-binding response regulator  40.18 
 
 
223 aa  68.6  0.00000000003  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_5353  DNA-binding response regulator  39.47 
 
 
223 aa  68.2  0.00000000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A5385  DNA-binding response regulator  40.18 
 
 
223 aa  68.6  0.00000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4944  DNA-binding response regulator  39.47 
 
 
223 aa  68.2  0.00000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0109954  n/a   
 
 
-
 
NC_006274  BCZK4959  DNA-binding response regulator  39.47 
 
 
223 aa  68.2  0.00000000004  Bacillus cereus E33L  Bacteria  hitchhiker  0.000160223  n/a   
 
 
-
 
NC_009050  Rsph17029_3815  two component transcriptional regulator  35.71 
 
 
219 aa  67.8  0.00000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.681737  normal  0.25062 
 
 
-
 
NC_011830  Dhaf_4841  response regulator receiver protein  34.48 
 
 
118 aa  67.8  0.00000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.202718  n/a   
 
 
-
 
NC_008528  OEOE_0105  DNA-binding response regulator  43.1 
 
 
237 aa  68.2  0.00000000004  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0628  two component, sigma54 specific, transcriptional regulator, Fis family  35.59 
 
 
446 aa  67.4  0.00000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5113  DNA-binding response regulator  39.47 
 
 
223 aa  67.4  0.00000000006  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.00211772  n/a   
 
 
-
 
NC_011899  Hore_13280  two component transcriptional regulator, winged helix family  41.38 
 
 
227 aa  67.4  0.00000000006  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000536961  n/a   
 
 
-
 
NC_007530  GBAA_5504  DNA-binding response regulator  39.47 
 
 
223 aa  67.4  0.00000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010644  Emin_1198  response regulator receiver sensor signal transduction histidine kinase  33.04 
 
 
375 aa  67.4  0.00000000006  Elusimicrobium minutum Pei191  Bacteria  normal  hitchhiker  0.00328285 
 
 
-
 
NC_008786  Veis_1498  two component, sigma54 specific, Fis family transcriptional regulator  34.96 
 
 
500 aa  67.4  0.00000000006  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1705  two component, sigma54 specific, Fis family transcriptional regulator  37.5 
 
 
502 aa  67.4  0.00000000007  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3088  two component transcriptional regulator  35.71 
 
 
219 aa  67.4  0.00000000007  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0732  two component transcriptional regulator, winged helix family  37.5 
 
 
231 aa  67  0.00000000007  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_5055  two component transcriptional regulator  39.29 
 
 
223 aa  67.4  0.00000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6752  two component transcriptional regulator, winged helix family  37.19 
 
 
230 aa  67  0.00000000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1215  nitrogen metabolism transcriptional regulator, NtrC, Fis family  33.05 
 
 
471 aa  67  0.00000000009  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0834  two component transcriptional regulator PhoB, winged helix family  38.52 
 
 
265 aa  66.6  0.0000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0108417 
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  33.33 
 
 
246 aa  66.2  0.0000000001  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_009012  Cthe_1394  two component transcriptional regulator  34.43 
 
 
236 aa  66.6  0.0000000001  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000024965  n/a   
 
 
-
 
NC_009654  Mmwyl1_0734  nitrogen metabolism transcriptional regulator, NtrC, Fis family  33.33 
 
 
477 aa  66.2  0.0000000001  Marinomonas sp. MWYL1  Bacteria  normal  0.942918  normal 
 
 
-
 
NC_007778  RPB_2882  nitrogen metabolism transcriptional regulator NtrC  33.61 
 
 
480 aa  66.6  0.0000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.173418  normal 
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  36.89 
 
 
236 aa  66.2  0.0000000001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2578  nitrogen metabolism transcriptional regulator NtrC  33.61 
 
 
480 aa  66.6  0.0000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.152448  normal  0.275348 
 
 
-
 
NC_009485  BBta_4070  nitrogen metabolism transcriptional regulator NtrC  33.61 
 
 
480 aa  66.6  0.0000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.131979  normal  0.446618 
 
 
-
 
NC_007958  RPD_2590  nitrogen metabolism transcriptional regulator NtrC  33.61 
 
 
480 aa  66.6  0.0000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.858566  normal  0.0152229 
 
 
-
 
NC_008043  TM1040_3373  two component transcriptional regulator  34.43 
 
 
238 aa  66.2  0.0000000001  Ruegeria sp. TM1040  Bacteria  normal  0.584151  normal  0.399207 
 
 
-
 
NC_008312  Tery_4025  two component LuxR family transcriptional regulator  35.2 
 
 
230 aa  66.6  0.0000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.236685 
 
 
-
 
NC_008578  Acel_1449  two component transcriptional regulator  35.09 
 
 
246 aa  66.6  0.0000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  0.566781  normal 
 
 
-
 
NC_007777  Francci3_1155  two component transcriptional regulator  35.24 
 
 
235 aa  65.5  0.0000000002  Frankia sp. CcI3  Bacteria  normal  0.503115  normal 
 
 
-
 
NC_007964  Nham_1837  nitrogen metabolism transcriptional regulator, NtrC, Fis family  32.79 
 
 
480 aa  65.9  0.0000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0949  two component transcriptional regulator, winged helix family  35.59 
 
 
229 aa  65.5  0.0000000002  Methylobacterium populi BJ001  Bacteria  normal  0.0140851  normal 
 
 
-
 
NC_008261  CPF_0226  DNA-binding response regulator  40.19 
 
 
223 aa  65.9  0.0000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.232655  n/a   
 
 
-
 
NC_011004  Rpal_2863  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  33.61 
 
 
480 aa  65.9  0.0000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1950  DNA-binding response regulator  42.02 
 
 
235 aa  65.9  0.0000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.100456  n/a   
 
 
-
 
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