More than 300 homologs were found in PanDaTox collection
for query gene Cpin_2386 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_2386  transcriptional regulator, Crp/Fnr family  100 
 
 
230 aa  482  1e-135  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0267635  normal  0.395563 
 
 
-
 
NC_009441  Fjoh_4632  CRP/FNR family transcriptional regulator  36.87 
 
 
234 aa  143  2e-33  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  37.17 
 
 
236 aa  140  9.999999999999999e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_008255  CHU_1971  transcriptional regulator  36.84 
 
 
237 aa  133  1.9999999999999998e-30  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.644199 
 
 
-
 
NC_009441  Fjoh_2535  CRP/FNR family transcriptional regulator  33.67 
 
 
226 aa  117  9.999999999999999e-26  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4234  transcriptional regulator, Crp/Fnr family  31.09 
 
 
248 aa  103  3e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  33.85 
 
 
225 aa  102  6e-21  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  29.13 
 
 
354 aa  101  1e-20  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  28.64 
 
 
224 aa  100  3e-20  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  29.65 
 
 
226 aa  100  3e-20  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  29.61 
 
 
224 aa  100  3e-20  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  31.96 
 
 
239 aa  99.8  3e-20  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  28.16 
 
 
224 aa  95.5  6e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  28.64 
 
 
224 aa  94.4  1e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  28.36 
 
 
355 aa  94.4  1e-18  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  25.87 
 
 
225 aa  93.6  2e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG0396  Crp/FNR family transcriptional regulator  29.38 
 
 
232 aa  93.2  3e-18  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  28.64 
 
 
224 aa  93.2  3e-18  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  28.64 
 
 
224 aa  93.2  3e-18  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  28.64 
 
 
224 aa  93.2  3e-18  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  28.16 
 
 
224 aa  92.8  4e-18  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  28.64 
 
 
224 aa  92.8  4e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  27.18 
 
 
225 aa  92.8  4e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.57 
 
 
225 aa  92.4  5e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.85 
 
 
224 aa  92.4  6e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  27.18 
 
 
224 aa  92  7e-18  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  30.77 
 
 
257 aa  91.7  8e-18  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  28.07 
 
 
244 aa  91.3  1e-17  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  28.32 
 
 
244 aa  90.9  1e-17  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  27.37 
 
 
352 aa  91.3  1e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  28.19 
 
 
244 aa  91.3  1e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  28.51 
 
 
253 aa  91.3  1e-17  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  28.19 
 
 
244 aa  91.3  1e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_007005  Psyr_3425  cyclic nucleotide-binding: regulatory protein, Crp  27.63 
 
 
244 aa  90.1  2e-17  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0533041 
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  28.27 
 
 
244 aa  89.7  3e-17  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  28.51 
 
 
244 aa  89.4  4e-17  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  28.51 
 
 
244 aa  89.4  4e-17  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  28.51 
 
 
244 aa  89  5e-17  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  31.31 
 
 
236 aa  89.4  5e-17  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  31.53 
 
 
236 aa  89  5e-17  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  28.18 
 
 
261 aa  89  6e-17  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  28.18 
 
 
261 aa  89  6e-17  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  31.53 
 
 
236 aa  89  6e-17  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  28.51 
 
 
244 aa  89  6e-17  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  28.44 
 
 
242 aa  88.6  7e-17  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  29.41 
 
 
245 aa  88.6  7e-17  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  28.33 
 
 
352 aa  88.6  8e-17  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  28.28 
 
 
228 aa  87.8  1e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  30.81 
 
 
236 aa  87.4  2e-16  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  26.27 
 
 
246 aa  87.4  2e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  25.43 
 
 
266 aa  86.7  3e-16  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  29.35 
 
 
225 aa  86.7  3e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_010086  Bmul_4265  Crp/FNR family transcriptional regulator  27.43 
 
 
259 aa  86.3  3e-16  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.367581  normal  0.892156 
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  29.56 
 
 
227 aa  86.3  3e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1991  transcriptional activator Anr  26.91 
 
 
244 aa  85.5  6e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.695719  n/a   
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  26.48 
 
 
232 aa  85.5  6e-16  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  26.73 
 
 
232 aa  85.5  6e-16  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  28.5 
 
 
348 aa  85.5  6e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_002977  MCA2120  Crp/FNR family transcriptional regulator  27.56 
 
 
245 aa  85.5  7e-16  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4762  Crp/FNR family transcriptional regulator  28.16 
 
 
225 aa  85.5  7e-16  Salinispora arenicola CNS-205  Bacteria  normal  0.900483  hitchhiker  0.0000929699 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  27.18 
 
 
224 aa  85.1  8e-16  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  27.98 
 
 
256 aa  85.1  9e-16  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4322  cyclic nucleotide-binding  27.67 
 
 
225 aa  85.1  9e-16  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0230513 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  30.26 
 
 
231 aa  84.7  0.000000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  27.31 
 
 
259 aa  84.3  0.000000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  27.31 
 
 
259 aa  84.3  0.000000000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0394  transcriptional regulator, Crp/Fnr family  35.71 
 
 
237 aa  84.7  0.000000000000001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  27.31 
 
 
259 aa  84.3  0.000000000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_010501  PputW619_3034  Crp/FNR family transcriptional regulator  27.23 
 
 
269 aa  84.7  0.000000000000001  Pseudomonas putida W619  Bacteria  normal  0.369454  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  28.14 
 
 
241 aa  83.6  0.000000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  29.47 
 
 
231 aa  84  0.000000000000002  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  27.11 
 
 
257 aa  83.6  0.000000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  26.41 
 
 
250 aa  84  0.000000000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  29.47 
 
 
231 aa  84  0.000000000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  29.41 
 
 
226 aa  84  0.000000000000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  27.43 
 
 
259 aa  84.3  0.000000000000002  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  26.92 
 
 
254 aa  84  0.000000000000002  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  28.42 
 
 
234 aa  83.6  0.000000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  28.63 
 
 
254 aa  83.6  0.000000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3287  Crp/FNR family transcriptional regulator  26.2 
 
 
265 aa  83.2  0.000000000000003  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3455  Crp/FNR family transcriptional regulator  24 
 
 
237 aa  83.2  0.000000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.063385 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  27.89 
 
 
249 aa  83.2  0.000000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  26.41 
 
 
242 aa  83.2  0.000000000000003  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  26.67 
 
 
259 aa  83.2  0.000000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  26.5 
 
 
250 aa  82.4  0.000000000000006  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  26.5 
 
 
250 aa  82  0.000000000000006  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  26.5 
 
 
250 aa  82  0.000000000000006  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  25.23 
 
 
225 aa  82.4  0.000000000000006  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  26.5 
 
 
250 aa  82.4  0.000000000000006  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  26.5 
 
 
250 aa  82.4  0.000000000000006  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.02 
 
 
242 aa  82  0.000000000000006  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  26.5 
 
 
250 aa  82.4  0.000000000000006  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  26.5 
 
 
250 aa  82.4  0.000000000000006  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  26.5 
 
 
250 aa  82.4  0.000000000000006  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  26.5 
 
 
250 aa  82.4  0.000000000000006  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  26.5 
 
 
250 aa  82  0.000000000000008  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  26.67 
 
 
242 aa  81.6  0.000000000000008  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  27.98 
 
 
256 aa  81.6  0.000000000000009  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  26.5 
 
 
250 aa  81.6  0.00000000000001  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  26.07 
 
 
250 aa  81.3  0.00000000000001  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
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