More than 300 homologs were found in PanDaTox collection
for query gene CPR_2056 on replicon NC_008262
Organism: Clostridium perfringens SM101



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008261  CPF_2344  AraC family DNA-binding response regulator  98.42 
 
 		 507 aa  982    Clostridium perfringens ATCC 13124  Bacteria  normal  0.627636  n/a   
 
 
-
 
NC_008262  CPR_2056  AraC family DNA-binding response regulator  100 
 
 		 507 aa  997    Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_1722  two component AraC family transcriptional regulator  40.35 
 
 		 508 aa  350  4e-95  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0995  two component transcriptional regulator, AraC family  33.52 
 
 		 542 aa  204  2e-51  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_2055  two component transcriptional regulator, AraC family  30.89 
 
 		 519 aa  198  2.0000000000000003e-49  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_0314  two component transcriptional regulator, AraC family  31.36 
 
 		 494 aa  191  2.9999999999999997e-47  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_1138  two component transcriptional regulator, AraC family  28.49 
 
 		 519 aa  189  1e-46  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0147  two component transcriptional regulator, AraC family  29.04 
 
 		 525 aa  183  5.0000000000000004e-45  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0149  two component transcriptional regulator, AraC family  28.22 
 
 		 525 aa  182  1e-44  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0944  two component transcriptional regulator, AraC family  29.27 
 
 		 539 aa  181  2e-44  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  28.99 
 
 		 538 aa  178  2e-43  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_012034  Athe_2550  two component transcriptional regulator, AraC family  31.15 
 
 		 502 aa  176  9.999999999999999e-43  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  27.2 
 
 		 530 aa  174  2.9999999999999996e-42  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_010001  Cphy_3211  two component AraC family transcriptional regulator  29.85 
 
 		 548 aa  171  3e-41  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_012034  Athe_0600  two component transcriptional regulator, AraC family  28.28 
 
 		 546 aa  165  2.0000000000000002e-39  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_1394  two component AraC family transcriptional regulator  27.12 
 
 		 523 aa  159  1e-37  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_011898  Ccel_1645  two component transcriptional regulator, AraC family  26.42 
 
 		 526 aa  155  1e-36  Clostridium cellulolyticum H10  Bacteria  normal  0.168722  n/a   
 
 
-
 
NC_011898  Ccel_1228  two component transcriptional regulator, AraC family  28.44 
 
 		 532 aa  147  3e-34  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_2007  two component AraC family transcriptional regulator  28 
 
 		 529 aa  147  5e-34  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_1111  AraC family transcriptional regulator  28.57 
 
 		 506 aa  147  5e-34  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.0000128485  n/a   
 
 
-
 
NC_011898  Ccel_0198  two component transcriptional regulator, AraC family  26.32 
 
 		 534 aa  146  7.0000000000000006e-34  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3282  two component AraC family transcriptional regulator  26.04 
 
 		 535 aa  146  9e-34  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3034  two component AraC family transcriptional regulator  26.17 
 
 		 556 aa  144  3e-33  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00618221  n/a   
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  23.54 
 
 		 548 aa  142  9.999999999999999e-33  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009012  Cthe_3164  two component AraC family transcriptional regulator  25.41 
 
 		 544 aa  142  1.9999999999999998e-32  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0633186  n/a   
 
 
-
 
NC_012793  GWCH70_3156  two component transcriptional regulator, AraC family  23.7 
 
 		 515 aa  135  1.9999999999999998e-30  Geobacillus sp. WCH70  Bacteria  normal  0.949308  n/a   
 
 
-
 
NC_010001  Cphy_0496  two component AraC family transcriptional regulator  27.36 
 
 		 543 aa  131  3e-29  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0579  two component AraC family transcriptional regulator  23.55 
 
 		 531 aa  129  1.0000000000000001e-28  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  23.74 
 
 		 513 aa  126  8.000000000000001e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  44.29 
 
 		 365 aa  122  1.9999999999999998e-26  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_2123  two component AraC family transcriptional regulator  23.94 
 
 		 414 aa  121  3.9999999999999996e-26  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.331776  n/a   
 
 
-
 
NC_011898  Ccel_1251  two component transcriptional regulator, AraC family  24.64 
 
 		 566 aa  110  5e-23  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3887  two component AraC family transcriptional regulator  37.5 
 
 		 252 aa  110  6e-23  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_4591  two component transcriptional regulator, AraC family  37.12 
 
 		 265 aa  109  1e-22  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0618  two component AraC family transcriptional regulator  41.07 
 
 		 258 aa  107  7e-22  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.00000605397  n/a   
 
 
-
 
NC_010001  Cphy_2141  two component AraC family transcriptional regulator  40.46 
 
 		 260 aa  106  1e-21  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_2452  two component transcriptional regulator, AraC family  37.35 
 
 		 509 aa  105  3e-21  Clostridium cellulolyticum H10  Bacteria  normal  0.0693402  n/a   
 
 
-
 
NC_009487  SaurJH9_0207  response regulator receiver protein  35.33 
 
 		 252 aa  104  3e-21  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_009632  SaurJH1_0213  response regulator receiver  35.33 
 
 		 252 aa  104  3e-21  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_2253  two component AraC family transcriptional regulator  37.98 
 
 		 532 aa  103  8e-21  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_1982  two component transcriptional regulator, AraC family  38.76 
 
 		 544 aa  103  1e-20  Clostridium cellulolyticum H10  Bacteria  normal  0.184696  n/a   
 
 
-
 
NC_010320  Teth514_0224  response regulator receiver protein  37.5 
 
 		 537 aa  99  2e-19  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_2718  two component transcriptional regulator, AraC family  37.8 
 
 		 259 aa  98.2  3e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_3249  two component transcriptional regulator, AraC family  39.2 
 
 		 531 aa  97.8  4e-19  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1584  two component AraC family transcriptional regulator  37.76 
 
 		 259 aa  97.1  7e-19  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3861  two component AraC family transcriptional regulator  38.79 
 
 		 259 aa  96.7  1e-18  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_2373  two component transcriptional regulator, AraC family  41.44 
 
 		 252 aa  96.3  1e-18  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0771  two component AraC family transcriptional regulator  37.42 
 
 		 355 aa  95.1  2e-18  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000862622  n/a   
 
 
-
 
NC_010001  Cphy_1583  two component AraC family transcriptional regulator  38.52 
 
 		 533 aa  94.7  3e-18  Clostridium phytofermentans ISDg  Bacteria  normal  0.160886  n/a   
 
 
-
 
NC_010001  Cphy_3405  two component AraC family transcriptional regulator  40.8 
 
 		 253 aa  94.4  4e-18  Clostridium phytofermentans ISDg  Bacteria  normal  0.100445  n/a   
 
 
-
 
NC_002976  SERP2406  AraC family DNA-binding response regulator  33.56 
 
 		 251 aa  94  5e-18  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  38.14 
 
 		 224 aa  92.8  1e-17  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal  1 
 
 
-
 
NC_009012  Cthe_1824  two component AraC family transcriptional regulator  40.37 
 
 		 362 aa  92.8  1e-17  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000196685  n/a   
 
 
-
 
NC_004116  SAG1946  DNA-binding response regulator  37.69 
 
 		 257 aa  89.7  1e-16  Streptococcus agalactiae 2603V/R  Bacteria  normal  1  n/a   
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  32.77 
 
 		 215 aa  89.7  1e-16  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  32.77 
 
 		 215 aa  89.7  1e-16  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  32.77 
 
 		 215 aa  89.7  1e-16  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  40.35 
 
 		 218 aa  89.7  1e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A0919  two component AraC family transcriptional regulator  33.59 
 
 		 356 aa  88.6  2e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  35.65 
 
 		 472 aa  89  2e-16  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_19910  response regulator receiver protein  37.5 
 
 		 386 aa  89.4  2e-16  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  38.46 
 
 		 216 aa  87.4  5e-16  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_010001  Cphy_0293  two component AraC family transcriptional regulator  35.71 
 
 		 532 aa  87  6e-16  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_0845  response regulator receiver modulated metal dependent phosphohydrolase  29.69 
 
 		 508 aa  86.7  9e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.903712  hitchhiker  0.00198769 
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  36.36 
 
 		 210 aa  86.3  0.000000000000001  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  36.36 
 
 		 210 aa  86.3  0.000000000000001  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010001  Cphy_0864  two component AraC family transcriptional regulator  35.71 
 
 		 503 aa  86.7  0.000000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  37.61 
 
 		 216 aa  85.9  0.000000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  33.93 
 
 		 215 aa  85.5  0.000000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011899  Hore_10620  response regulator receiver protein  37.5 
 
 		 122 aa  85.9  0.000000000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00212992  n/a   
 
 
-
 
NC_012034  Athe_1885  response regulator receiver protein  38.26 
 
 		 1066 aa  85.1  0.000000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.166704  n/a   
 
 
-
 
NC_013235  Namu_5079  two component transcriptional regulator, LuxR family  31.93 
 
 		 217 aa  85.9  0.000000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  0.525358 
 
 
-
 
NC_009483  Gura_0876  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  38.54 
 
 		 709 aa  85.9  0.000000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.0730078  n/a   
 
 
-
 
NC_007925  RPC_1179  two component AraC family transcriptional regulator  32.03 
 
 		 359 aa  85.1  0.000000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_2098  multi-sensor signal transduction histidine kinase  31.17 
 
 		 547 aa  85.1  0.000000000000003  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000413163 
 
 
-
 
NC_011146  Gbem_2120  multi-sensor signal transduction histidine kinase  31.17 
 
 		 547 aa  85.1  0.000000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_1905  response regulator receiver sensor hybrid histidine kinase  40.82 
 
 		 668 aa  84  0.000000000000005  Spirosoma linguale DSM 74  Bacteria  normal  0.0295515  normal  0.210974 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  39.32 
 
 		 219 aa  84.3  0.000000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_008312  Tery_0615  response regulator receiver sensor signal transduction histidine kinase  30.39 
 
 		 395 aa  84.3  0.000000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  1  hitchhiker  0.00858549 
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  33.61 
 
 		 219 aa  84.3  0.000000000000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  0.92254 
 
 
-
 
NC_012034  Athe_0853  two component transcriptional regulator, AraC family  40.2 
 
 		 509 aa  84  0.000000000000006  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_0555  AraC family DNA-binding response regulator  35.96 
 
 		 529 aa  84  0.000000000000006  Clostridium perfringens ATCC 13124  Bacteria  normal  1  n/a   
 
 
-
 
NC_011059  Paes_1430  multi-sensor signal transduction histidine kinase  27.94 
 
 		 737 aa  82.8  0.00000000000001  Prosthecochloris aestuarii DSM 271  Bacteria  normal  1  normal  0.224344 
 
 
-
 
NC_011146  Gbem_2024  multi-sensor signal transduction histidine kinase  30.77 
 
 		 517 aa  82.8  0.00000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_0102  two component transcriptional regulator, AraC family  38.38 
 
 		 519 aa  82.8  0.00000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_4377  multi-sensor signal transduction histidine kinase  38 
 
 		 636 aa  83.2  0.00000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  39.17 
 
 		 213 aa  82.4  0.00000000000002  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010003  Pmob_0297  response regulator receiver/ANTAR domain-containing protein  41.8 
 
 		 195 aa  82.4  0.00000000000002  Petrotoga mobilis SJ95  Bacteria  normal  0.719259  n/a   
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  34.48 
 
 		 223 aa  82.4  0.00000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  35.45 
 
 		 213 aa  82.4  0.00000000000002  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  33.04 
 
 		 220 aa  82.4  0.00000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_0583  response regulator receiver protein  34.75 
 
 		 394 aa  82  0.00000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  34.75 
 
 		 222 aa  82  0.00000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
NC_009441  Fjoh_1987  two component LuxR family transcriptional regulator  39.32 
 
 		 213 aa  82  0.00000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.429674  n/a   
 
 
-
 
NC_009511  Swit_0716  AraC family transcriptional regulator  31.45 
 
 		 296 aa  82  0.00000000000002  Sphingomonas wittichii RW1  Bacteria  normal  1  hitchhiker  0.00193737 
 
 
-
 
NC_003909  BCE_1102  LuxR family DNA-binding response regulator  36.97 
 
 		 214 aa  81.6  0.00000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_013173  Dbac_1884  two component transcriptional regulator, LuxR family  33.33 
 
 		 219 aa  81.6  0.00000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_007519  Dde_3536  two component Fis family transcriptional regulator  31.88 
 
 		 447 aa  81.6  0.00000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  34.38 
 
 		 513 aa  81.6  0.00000000000003  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.102838 
 
 
-
 
NC_008554  Sfum_1396  PAS/PAC sensor hybrid histidine kinase  33.07 
 
 		 721 aa  81.6  0.00000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.814379  normal  0.333041 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>