Gene Gura_0876 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGura_0876 
Symbol 
ID5162742 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter uraniireducens Rf4 
KingdomBacteria 
Replicon accessionNC_009483 
Strand
Start bp1040188 
End bp1042317 
Gene Length2130 bp 
Protein Length709 aa 
Translation table11 
GC content52% 
IMG OID640548372 
Productresponse regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001229655 
Protein GI148262949 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0730078 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATCC CGGATGGTTT GACAACCGCT CCGACACTTT TATATGTGGA AGATGACAGG 
GCAACCAGAG AGCTGATCTC ACTGGTGATA ACCAATAAAT TCCCCGATGT GACTTTATTG
CAGGCGAGCA ACGGTCAAGA GGGGCTCGCA TTGTTTAAAA AACATGCACC GGATATTGTC
CTTACCGATA TGCAGATGCC GGTCATGGAC GGTATCACGA TGGCAAAGGA AATCAAGCAG
CTGAACAAAG AAGCCAAGAT CATCGTCATT TCCGCACACA ACGACACAGG CCACATCATT
GACGCCATCG ACATCGGCAT CAATCACTAC GTGCTGAAAC CGATCAACCA CAACAAGCTC
CGGGCGGTAA TCGGACAATG CATGACCAGC ATCAAGTGGG AACGGCAGAT CCGTGAACAG
GAAAAATTCA TCCGCAAATT GTCCCGCGCC GTTGAACAGA GTCCGGTAGC CATTATCATC
ACCGACACTT CCGGCACAAT TGAGTATGTA AACCCCCGGT TTACGCAGTT GACCGGTTAT
ACCTCCGCAG AAACGATCGG CAAAAAGCCG CATATTTTGA AGTCAGGTGA AACTCCACCG
GAAGAATACC GCAAATTATG GGAAATCATA AGTGGCGGCG GGGAGTGGTG GGGTGAATTT
CATAACCGGA AAAAGAACGG CGAACTCTAC TGGGCTTCAG CCTCCATCTC GCCGATTACC
AACGGAAACG AACAGATCAC CCACTTCATA GCCTTTCAGG AAGACATAAC CGAACGAAAA
CAGGCAGAAG AAACCATAAA GCAGATGGCA TACTACGATA CCCTCACAGG CCTCCCCAAT
CGCCATCTGT TCAACGAACT GATGCATCTT GCCCTGGCTC AGGCCCATCG GCACAACCGG
CTTCTCGCCG TGCTTTTCCT CGACCTCGAC CGATTCAAGC ATATCAACGA CACTCTCGGC
CATACCGTAG GCGATCAGCT TCTCCAGGCT TCAGCCCATC GTCTCAAGGA ATGCTGCCGG
CGTGACCGGG ATACCGTTGC CCGACGCGGC GGTGATGAAT TCATCATCCT CCTCCCCGAC
ATCGATGATG TGCAAGAGGC GGTCAGGGTC GCACAGAAGA TCATCGACGC CTTCACCCAG
GTCTTCGTCC TCCCGGACAT CGAGCTTTTC ATCAGCACCT GCATCGGGAT CAGCATTTTC
CCCAATGACG GCAGAGACAC GGAAACCCTG ATAAAAAACG CCGACATGGC CATGTACCGC
GCCAAGGAAC AAGGTCGGAG CAGGTACCAC CTTTACACAT CTTCCATGGA TGAGCAGGCA
TTCCGCCGGC TGACAATGGA GAACAGCCTG CGTAAGGCCC TTCAACGTGA GGAATTTTCC
CTCTACTATC AACCGAAGGT CAATATCAAA ACCGGCCAGA TCGTCTGTCT CGAAGCGCTC
GTCCGCTGGC AGAACCCGGA GATGGGACTT ATCCTGCCAA ATCAGTTCAT CCCCCTGGCT
GAAGACACCG GACTGATCAT TCCCCTCGGC GAATGGGTGC TTCGCACCGC CTGCGCCCAA
AACAAAACAT GGCAGCTGCT AAATTATCCC CCCATGCGCG TCGCCGTGAA CTTTTCGCCG
CGGCAATTCC AGCAGCCAAG GCTGACGGAT ATGGTCGAGC AGATATTGGG TGAAGCAGAT
CTCGCTCCCT GCTGGCTTGA ACTGGAACTG ACCGAAAACG TCATGCTGCA GAATGTGGAA
AAAACCGTAC AGACGCTAAA TAGATTGAGC AATCTGGGGA TACATATCTC CATCGACGAC
TTCGGCACGG GTTATTCGTC GCTTTCCTAT ATAAAAAAGC TTCCCATCCA GACATTGAAA
ATCGATCGCT CCTTTGTCCA TGACATAAAT ACCAACGCCG ACGATGCGGC CATTGCCATA
GCGGTCATTA CCATGGCACA AAGCCTCAGG CTCAACGTCA TAGCCGAAGG GGTCGAAACC
CTGGAGCAAA TGAAGCTGCT CGACGGCCTC AACTGCCCGG AAATGCAAGG TTATTTATTC
AGCAAGCCCC TTCCGGTAGC CGAGATGACC ACACTCCTTT CCAACATAAA ATGGCCGGAC
ATGACCTGGA AAGATCCAAC GCTGCACTAA
 
Protein sequence
MNIPDGLTTA PTLLYVEDDR ATRELISLVI TNKFPDVTLL QASNGQEGLA LFKKHAPDIV 
LTDMQMPVMD GITMAKEIKQ LNKEAKIIVI SAHNDTGHII DAIDIGINHY VLKPINHNKL
RAVIGQCMTS IKWERQIREQ EKFIRKLSRA VEQSPVAIII TDTSGTIEYV NPRFTQLTGY
TSAETIGKKP HILKSGETPP EEYRKLWEII SGGGEWWGEF HNRKKNGELY WASASISPIT
NGNEQITHFI AFQEDITERK QAEETIKQMA YYDTLTGLPN RHLFNELMHL ALAQAHRHNR
LLAVLFLDLD RFKHINDTLG HTVGDQLLQA SAHRLKECCR RDRDTVARRG GDEFIILLPD
IDDVQEAVRV AQKIIDAFTQ VFVLPDIELF ISTCIGISIF PNDGRDTETL IKNADMAMYR
AKEQGRSRYH LYTSSMDEQA FRRLTMENSL RKALQREEFS LYYQPKVNIK TGQIVCLEAL
VRWQNPEMGL ILPNQFIPLA EDTGLIIPLG EWVLRTACAQ NKTWQLLNYP PMRVAVNFSP
RQFQQPRLTD MVEQILGEAD LAPCWLELEL TENVMLQNVE KTVQTLNRLS NLGIHISIDD
FGTGYSSLSY IKKLPIQTLK IDRSFVHDIN TNADDAAIAI AVITMAQSLR LNVIAEGVET
LEQMKLLDGL NCPEMQGYLF SKPLPVAEMT TLLSNIKWPD MTWKDPTLH