Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gura_0876 |
Symbol | |
ID | 5162742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter uraniireducens Rf4 |
Kingdom | Bacteria |
Replicon accession | NC_009483 |
Strand | - |
Start bp | 1040188 |
End bp | 1042317 |
Gene Length | 2130 bp |
Protein Length | 709 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640548372 |
Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001229655 |
Protein GI | 148262949 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0730078 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATCC CGGATGGTTT GACAACCGCT CCGACACTTT TATATGTGGA AGATGACAGG GCAACCAGAG AGCTGATCTC ACTGGTGATA ACCAATAAAT TCCCCGATGT GACTTTATTG CAGGCGAGCA ACGGTCAAGA GGGGCTCGCA TTGTTTAAAA AACATGCACC GGATATTGTC CTTACCGATA TGCAGATGCC GGTCATGGAC GGTATCACGA TGGCAAAGGA AATCAAGCAG CTGAACAAAG AAGCCAAGAT CATCGTCATT TCCGCACACA ACGACACAGG CCACATCATT GACGCCATCG ACATCGGCAT CAATCACTAC GTGCTGAAAC CGATCAACCA CAACAAGCTC CGGGCGGTAA TCGGACAATG CATGACCAGC ATCAAGTGGG AACGGCAGAT CCGTGAACAG GAAAAATTCA TCCGCAAATT GTCCCGCGCC GTTGAACAGA GTCCGGTAGC CATTATCATC ACCGACACTT CCGGCACAAT TGAGTATGTA AACCCCCGGT TTACGCAGTT GACCGGTTAT ACCTCCGCAG AAACGATCGG CAAAAAGCCG CATATTTTGA AGTCAGGTGA AACTCCACCG GAAGAATACC GCAAATTATG GGAAATCATA AGTGGCGGCG GGGAGTGGTG GGGTGAATTT CATAACCGGA AAAAGAACGG CGAACTCTAC TGGGCTTCAG CCTCCATCTC GCCGATTACC AACGGAAACG AACAGATCAC CCACTTCATA GCCTTTCAGG AAGACATAAC CGAACGAAAA CAGGCAGAAG AAACCATAAA GCAGATGGCA TACTACGATA CCCTCACAGG CCTCCCCAAT CGCCATCTGT TCAACGAACT GATGCATCTT GCCCTGGCTC AGGCCCATCG GCACAACCGG CTTCTCGCCG TGCTTTTCCT CGACCTCGAC CGATTCAAGC ATATCAACGA CACTCTCGGC CATACCGTAG GCGATCAGCT TCTCCAGGCT TCAGCCCATC GTCTCAAGGA ATGCTGCCGG CGTGACCGGG ATACCGTTGC CCGACGCGGC GGTGATGAAT TCATCATCCT CCTCCCCGAC ATCGATGATG TGCAAGAGGC GGTCAGGGTC GCACAGAAGA TCATCGACGC CTTCACCCAG GTCTTCGTCC TCCCGGACAT CGAGCTTTTC ATCAGCACCT GCATCGGGAT CAGCATTTTC CCCAATGACG GCAGAGACAC GGAAACCCTG ATAAAAAACG CCGACATGGC CATGTACCGC GCCAAGGAAC AAGGTCGGAG CAGGTACCAC CTTTACACAT CTTCCATGGA TGAGCAGGCA TTCCGCCGGC TGACAATGGA GAACAGCCTG CGTAAGGCCC TTCAACGTGA GGAATTTTCC CTCTACTATC AACCGAAGGT CAATATCAAA ACCGGCCAGA TCGTCTGTCT CGAAGCGCTC GTCCGCTGGC AGAACCCGGA GATGGGACTT ATCCTGCCAA ATCAGTTCAT CCCCCTGGCT GAAGACACCG GACTGATCAT TCCCCTCGGC GAATGGGTGC TTCGCACCGC CTGCGCCCAA AACAAAACAT GGCAGCTGCT AAATTATCCC CCCATGCGCG TCGCCGTGAA CTTTTCGCCG CGGCAATTCC AGCAGCCAAG GCTGACGGAT ATGGTCGAGC AGATATTGGG TGAAGCAGAT CTCGCTCCCT GCTGGCTTGA ACTGGAACTG ACCGAAAACG TCATGCTGCA GAATGTGGAA AAAACCGTAC AGACGCTAAA TAGATTGAGC AATCTGGGGA TACATATCTC CATCGACGAC TTCGGCACGG GTTATTCGTC GCTTTCCTAT ATAAAAAAGC TTCCCATCCA GACATTGAAA ATCGATCGCT CCTTTGTCCA TGACATAAAT ACCAACGCCG ACGATGCGGC CATTGCCATA GCGGTCATTA CCATGGCACA AAGCCTCAGG CTCAACGTCA TAGCCGAAGG GGTCGAAACC CTGGAGCAAA TGAAGCTGCT CGACGGCCTC AACTGCCCGG AAATGCAAGG TTATTTATTC AGCAAGCCCC TTCCGGTAGC CGAGATGACC ACACTCCTTT CCAACATAAA ATGGCCGGAC ATGACCTGGA AAGATCCAAC GCTGCACTAA
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Protein sequence | MNIPDGLTTA PTLLYVEDDR ATRELISLVI TNKFPDVTLL QASNGQEGLA LFKKHAPDIV LTDMQMPVMD GITMAKEIKQ LNKEAKIIVI SAHNDTGHII DAIDIGINHY VLKPINHNKL RAVIGQCMTS IKWERQIREQ EKFIRKLSRA VEQSPVAIII TDTSGTIEYV NPRFTQLTGY TSAETIGKKP HILKSGETPP EEYRKLWEII SGGGEWWGEF HNRKKNGELY WASASISPIT NGNEQITHFI AFQEDITERK QAEETIKQMA YYDTLTGLPN RHLFNELMHL ALAQAHRHNR LLAVLFLDLD RFKHINDTLG HTVGDQLLQA SAHRLKECCR RDRDTVARRG GDEFIILLPD IDDVQEAVRV AQKIIDAFTQ VFVLPDIELF ISTCIGISIF PNDGRDTETL IKNADMAMYR AKEQGRSRYH LYTSSMDEQA FRRLTMENSL RKALQREEFS LYYQPKVNIK TGQIVCLEAL VRWQNPEMGL ILPNQFIPLA EDTGLIIPLG EWVLRTACAQ NKTWQLLNYP PMRVAVNFSP RQFQQPRLTD MVEQILGEAD LAPCWLELEL TENVMLQNVE KTVQTLNRLS NLGIHISIDD FGTGYSSLSY IKKLPIQTLK IDRSFVHDIN TNADDAAIAI AVITMAQSLR LNVIAEGVET LEQMKLLDGL NCPEMQGYLF SKPLPVAEMT TLLSNIKWPD MTWKDPTLH
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