More than 300 homologs were found in PanDaTox collection
for query gene Acry_1830 on replicon NC_009484
Organism: Acidiphilium cryptum JF-5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009484  Acry_1830  two component transcriptional regulator  100 
 
 
250 aa  508  1e-143  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0574  two component transcriptional regulator  67.37 
 
 
250 aa  338  7e-92  Acidiphilium cryptum JF-5  Bacteria  normal  0.821306  n/a   
 
 
-
 
NC_007802  Jann_2505  two component transcriptional regulator  40.54 
 
 
238 aa  169  3e-41  Jannaschia sp. CCS1  Bacteria  normal  0.791438  normal  0.178168 
 
 
-
 
NC_009719  Plav_2174  two component transcriptional regulator  40.47 
 
 
235 aa  169  4e-41  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.77199  normal 
 
 
-
 
NC_008254  Meso_2213  two component transcriptional regulator / cell cycle transcriptional regulator CtrA  41.67 
 
 
249 aa  168  8e-41  Chelativorans sp. BNC1  Bacteria  normal  0.88155  n/a   
 
 
-
 
NC_009511  Swit_4854  two component transcriptional regulator  41.79 
 
 
231 aa  167  1e-40  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0563  two component transcriptional regulator  40.69 
 
 
235 aa  167  1e-40  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.621979  normal  0.422433 
 
 
-
 
NC_009667  Oant_1569  two component transcriptional regulator  43.01 
 
 
232 aa  167  2e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2605  two component transcriptional regulator  43 
 
 
233 aa  166  2.9999999999999998e-40  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1026  two component transcriptional regulator  41.92 
 
 
231 aa  165  5e-40  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3079  two component transcriptional regulator, winged helix family  43.01 
 
 
233 aa  165  5e-40  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.457382 
 
 
-
 
NC_012850  Rleg_3336  two component transcriptional regulator, winged helix family  43.01 
 
 
233 aa  165  5e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.523001 
 
 
-
 
NC_011989  Avi_3527  two component response regulator  41.67 
 
 
233 aa  165  6.9999999999999995e-40  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1599  cell cycle transcriptional regulator CtrA  42.49 
 
 
232 aa  164  1.0000000000000001e-39  Brucella suis 1330  Bacteria  normal  0.0123641  n/a   
 
 
-
 
NC_011757  Mchl_0784  two component transcriptional regulator, winged helix family  41.58 
 
 
233 aa  164  1.0000000000000001e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.182528 
 
 
-
 
NC_010172  Mext_0824  response regulator receiver  41.58 
 
 
233 aa  164  1.0000000000000001e-39  Methylobacterium extorquens PA1  Bacteria  normal  0.788002  normal  0.224481 
 
 
-
 
NC_009505  BOV_1542  cell cycle transcriptional regulator CtrA  42.49 
 
 
232 aa  164  1.0000000000000001e-39  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_007643  Rru_A0525  two component transcriptional regulator / cell cycle transcriptional regulator CtrA  41.18 
 
 
239 aa  164  2.0000000000000002e-39  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0303  two component transcriptional regulator  40.51 
 
 
233 aa  163  3e-39  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0747  two component transcriptional regulator, winged helix family  41.09 
 
 
233 aa  163  3e-39  Methylobacterium populi BJ001  Bacteria  normal  0.485257  normal  0.934966 
 
 
-
 
NC_009952  Dshi_1508  cell cycle transcriptional regulator ctrA  41.58 
 
 
237 aa  162  4.0000000000000004e-39  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.469708  normal  0.710734 
 
 
-
 
NC_008044  TM1040_1399  two component transcriptional regulator  40.91 
 
 
239 aa  162  4.0000000000000004e-39  Ruegeria sp. TM1040  Bacteria  normal  normal  0.365128 
 
 
-
 
NC_007406  Nwi_0525  transcriptional regulatory protein  39.6 
 
 
233 aa  162  5.0000000000000005e-39  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.369528  normal  0.420949 
 
 
-
 
NC_011894  Mnod_3622  two component transcriptional regulator, winged helix family  40.59 
 
 
233 aa  162  7e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0114155  n/a   
 
 
-
 
NC_009720  Xaut_3488  two component transcriptional regulator  41.06 
 
 
233 aa  161  7e-39  Xanthobacter autotrophicus Py2  Bacteria  normal  0.487721  normal  0.120653 
 
 
-
 
NC_007925  RPC_4233  two component transcriptional regulator  39.6 
 
 
233 aa  161  8.000000000000001e-39  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0736222  normal 
 
 
-
 
NC_007964  Nham_3371  two component transcriptional regulator  39.6 
 
 
233 aa  161  8.000000000000001e-39  Nitrobacter hamburgensis X14  Bacteria  normal  0.442318  n/a   
 
 
-
 
NC_010511  M446_3946  two component transcriptional regulator  40.59 
 
 
233 aa  161  8.000000000000001e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.26309  normal  0.0241191 
 
 
-
 
NC_011004  Rpal_1822  two component transcriptional regulator, winged helix family  39.11 
 
 
233 aa  160  1e-38  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.077619  n/a   
 
 
-
 
NC_007493  RSP_2621  two component transcriptional regulator  38.33 
 
 
237 aa  160  1e-38  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.75303  n/a   
 
 
-
 
NC_009049  Rsph17029_1279  two component transcriptional regulator  38.33 
 
 
237 aa  160  1e-38  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.461363  normal  0.257738 
 
 
-
 
NC_007778  RPB_3912  two component transcriptional regulator  39.11 
 
 
233 aa  160  1e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3672  winged helix family two component transcriptional regulator  39.11 
 
 
233 aa  160  1e-38  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1903  two component transcriptional regulator  38.33 
 
 
237 aa  160  2e-38  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5573  two component transcriptional regulator  40.1 
 
 
233 aa  160  2e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.30933  normal 
 
 
-
 
NC_010581  Bind_0344  two component transcriptional regulator  40.2 
 
 
233 aa  160  3e-38  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.348132 
 
 
-
 
NC_010510  Mrad2831_6127  two component transcriptional regulator  40.93 
 
 
233 aa  159  4e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008783  BARBAKC583_1019  cell cycle transcriptional regulator CtrA  39.71 
 
 
233 aa  158  1e-37  Bartonella bacilliformis KC583  Bacteria  normal  0.736916  n/a   
 
 
-
 
NC_008347  Mmar10_0669  transcription regulator CtrA  41.54 
 
 
231 aa  157  1e-37  Maricaulis maris MCS10  Bacteria  normal  0.7626  normal 
 
 
-
 
NC_009485  BBta_6533  cell cycle transcriptional regulator CtrA  39.9 
 
 
233 aa  157  1e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.1191  normal 
 
 
-
 
NC_011666  Msil_2529  two component transcriptional regulator, winged helix family  39.9 
 
 
233 aa  156  4e-37  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009507  Swit_5319  cell cycle transcriptional regulator CtrA  39.9 
 
 
233 aa  155  8e-37  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0983847 
 
 
-
 
NC_011365  Gdia_1202  two component transcriptional regulator, winged helix family  38.64 
 
 
244 aa  154  1e-36  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_002978  WD0732  cell cycle transcriptional regulator  39.23 
 
 
256 aa  134  9.999999999999999e-31  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_1012  DNA-binding response regulator  39.18 
 
 
265 aa  132  6.999999999999999e-30  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.0213425  n/a   
 
 
-
 
NC_007354  Ecaj_0817  response regulator receiver: C terminal  38.66 
 
 
266 aa  130  1.0000000000000001e-29  Ehrlichia canis str. Jake  Bacteria  normal  0.0415499  n/a   
 
 
-
 
NC_011365  Gdia_3447  two component transcriptional regulator, winged helix family  39.31 
 
 
266 aa  122  5e-27  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.652082 
 
 
-
 
NC_009802  CCC13826_1969  response regulator receiver domain-containing protein  32.43 
 
 
219 aa  112  8.000000000000001e-24  Campylobacter concisus 13826  Bacteria  normal  0.478098  n/a   
 
 
-
 
NC_007912  Sde_3353  response regulator receiver domain-containing protein  33.49 
 
 
225 aa  111  1.0000000000000001e-23  Saccharophagus degradans 2-40  Bacteria  decreased coverage  0.000000000371413  normal  0.100473 
 
 
-
 
NC_009439  Pmen_2976  two component transcriptional regulator  32.29 
 
 
225 aa  109  3e-23  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.176642 
 
 
-
 
NC_008463  PA14_49180  two-component response regulator PhoP  31.84 
 
 
225 aa  109  4.0000000000000004e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.000831037 
 
 
-
 
NC_009656  PSPA7_4200  two-component response regulator PhoP  31.84 
 
 
225 aa  108  7.000000000000001e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  0.238609  n/a   
 
 
-
 
NC_007413  Ava_4085  two component transcriptional regulator  32.35 
 
 
225 aa  107  1e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.320847 
 
 
-
 
NC_011729  PCC7424_4548  multi-component transcriptional regulator, winged helix family  30.2 
 
 
614 aa  106  3e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010501  PputW619_1198  two component transcriptional regulator  31.39 
 
 
225 aa  106  4e-22  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_1842  response regulator receiver protein  28.44 
 
 
227 aa  104  1e-21  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4988  two component transcriptional regulator  29.86 
 
 
225 aa  105  1e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000131605 
 
 
-
 
NC_010577  XfasM23_1773  two component transcriptional regulator  28.44 
 
 
227 aa  104  1e-21  Xylella fastidiosa M23  Bacteria  normal  0.894508  n/a   
 
 
-
 
NC_010322  PputGB1_4230  two component transcriptional regulator  30.94 
 
 
241 aa  104  1e-21  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0229  two component transcriptional regulator, winged helix family  28.9 
 
 
227 aa  103  2e-21  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.069189  normal 
 
 
-
 
NC_011757  Mchl_1685  two component transcriptional regulator, winged helix family  30.77 
 
 
225 aa  103  3e-21  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00118059  normal 
 
 
-
 
NC_002947  PP_1186  winged helix family two component transcriptional regulator  30.49 
 
 
225 aa  103  3e-21  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1411  response regulator receiver  30.77 
 
 
225 aa  103  3e-21  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.110033 
 
 
-
 
NC_007005  Psyr_3709  response regulator receiver:transcriptional regulatory protein, C-terminal  30.94 
 
 
225 aa  102  4e-21  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00140607 
 
 
-
 
NC_004578  PSPTO_1679  transcriptional regulatory protein PhoP, putative  30.94 
 
 
225 aa  102  5e-21  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3187  two component transcriptional regulator  33.33 
 
 
229 aa  102  5e-21  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4240  two component transcriptional regulator  30.04 
 
 
225 aa  102  6e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.735778  normal 
 
 
-
 
NC_010725  Mpop_1407  two component transcriptional regulator, winged helix family  30.32 
 
 
225 aa  102  7e-21  Methylobacterium populi BJ001  Bacteria  normal  0.440596  normal  0.126744 
 
 
-
 
NC_010717  PXO_02836  two-component system regulatory protein (response regulator) required for AvrXa21 activity R2 (raxR2)  29.61 
 
 
223 aa  101  9e-21  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2505  two component transcriptional regulator  30 
 
 
226 aa  101  1e-20  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.457878  normal 
 
 
-
 
NC_014212  Mesil_3146  two component transcriptional regulator, winged helix family  30.77 
 
 
218 aa  100  2e-20  Meiothermus silvanus DSM 9946  Bacteria  normal  0.149495  normal 
 
 
-
 
NC_011884  Cyan7425_2941  multi-component transcriptional regulator, winged helix family  28.44 
 
 
652 aa  100  2e-20  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4628  two component transcriptional regulator, winged helix family  30 
 
 
224 aa  100  3e-20  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.000289587 
 
 
-
 
NC_009512  Pput_1216  two component transcriptional regulator  30.04 
 
 
225 aa  100  3e-20  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1416  two component transcriptional regulator, winged helix family  30.93 
 
 
225 aa  100  3e-20  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1445  two component transcriptional regulator, winged helix family  30.93 
 
 
225 aa  100  3e-20  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3067  two component transcriptional regulator  30.32 
 
 
224 aa  99.8  4e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.43316  normal 
 
 
-
 
NC_010511  M446_4436  two component transcriptional regulator  29.86 
 
 
227 aa  99.8  4e-20  Methylobacterium sp. 4-46  Bacteria  normal  0.177006  normal  0.889846 
 
 
-
 
NC_007798  NSE_0234  DNA-binding response regulator  30.94 
 
 
265 aa  99.4  5e-20  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_0003  response regulator receiver  31.67 
 
 
235 aa  99  6e-20  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4171  two component transcriptional regulator, winged helix family  29.41 
 
 
225 aa  99  6e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_4261  two component transcriptional regulator, winged helix family  30.24 
 
 
224 aa  99  7e-20  Cyanothece sp. PCC 8802  Bacteria  normal  0.906422  normal  0.0109867 
 
 
-
 
NC_008228  Patl_2840  two component transcriptional regulator  30.93 
 
 
226 aa  99  7e-20  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2695  two component transcriptional regulator  30.28 
 
 
226 aa  98.6  8e-20  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000000581772  normal  0.101861 
 
 
-
 
NC_010803  Clim_1291  two component transcriptional regulator, winged helix family  30.09 
 
 
222 aa  98.2  1e-19  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_4222  two component transcriptional regulator, winged helix family  30.24 
 
 
224 aa  97.8  1e-19  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_02297  response regulator in two-component regulatory system with PhoQ  28.29 
 
 
224 aa  98.2  1e-19  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5339  two component transcriptional regulator, winged helix family  27.73 
 
 
222 aa  97.4  2e-19  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0238  multi-component transcriptional regulator  29.82 
 
 
1629 aa  97.4  2e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  30.3 
 
 
225 aa  97.4  2e-19  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0699  two component transcriptional regulator  30.35 
 
 
220 aa  97.1  2e-19  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2348  two component transcriptional regulator  35.22 
 
 
224 aa  97.1  2e-19  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000162881  normal 
 
 
-
 
NC_007517  Gmet_1026  two component transcriptional regulator  28.18 
 
 
224 aa  96.7  3e-19  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000442073 
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  31.58 
 
 
233 aa  97.1  3e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008639  Cpha266_1205  two component transcriptional regulator  30.53 
 
 
222 aa  96.7  3e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1187  two component transcriptional regulatory protein  30.45 
 
 
223 aa  96.3  4e-19  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_0994  two component transcriptional regulator, winged helix family  29.44 
 
 
227 aa  96.3  5e-19  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.337893  n/a   
 
 
-
 
NC_004116  SAG2122  DNA-binding response regulator  28.96 
 
 
223 aa  95.5  7e-19  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5059  two component transcriptional regulator, winged helix family  27.73 
 
 
222 aa  95.5  7e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.118223  normal 
 
 
-
 
NC_008700  Sama_1542  response regulator receiver protein  35.85 
 
 
224 aa  95.5  8e-19  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
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