Gene Ppha_0994 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0994 
Symbol 
ID6461494 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp1030236 
End bp1030919 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content44% 
IMG OID642727245 
Producttwo component transcriptional regulator, winged helix family 
Protein accessionYP_002017895 
Protein GI194336101 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.337893 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGATTAC TGATTATCGA AGATGAACCG GGAATAGCCG GATTCCTCAA GGATGGACTC 
GAAGAGGAGT ACTTTGCCGT TGATATTGCC TATGACGGAA AAAGTGGGCT CGACATGGCA
CTGATCAATG AATACGACCT GATTATCGTT GACTGGATGA TTCCCGCCAT CAGCGGTATT
GAGGTCTGCA GGCAGATTCG AAAAACAGGG AATGCCGTCC CGATACTTTT TTTAACCGCA
AAAGATACGC TTGAAGATGT GATTTTCGGA CTTGACGCCG GTGCCAATGA TTATATCAAA
AAACCCTTTG AGTTTGAAGA GTTGCTTGCC CGCATCAGAG TACAGCTCAG GAATAAAAAC
CGAAATGACG ATTCACTCAA CGCCGGAATC CTTAACATTA ACCCGGTAAC CCATCAGGTA
TTCTGTGCTT CAACTGAAGT GACCCTCACA CCGAAAGAAT TTGCCCTCCT TGAATATCTT
GTACGTAATA AAGATCGAGT CTGTACCAGA AGCAGAATAA TCGAGCATGT ATGGGATATC
CATTTTGATT CCGATACCTC CGTCATTGAT GTCTATATCA CCTTTCTGCG CAGAAAACTC
GAAGCTGCAG GTTGTGGAAA CATTATTCAG ACCATCCGGG GAGTGGGATA TATCGTTCGT
GAACCAGAGA TTTCAAAAAC ATGA
 
Protein sequence
MRLLIIEDEP GIAGFLKDGL EEEYFAVDIA YDGKSGLDMA LINEYDLIIV DWMIPAISGI 
EVCRQIRKTG NAVPILFLTA KDTLEDVIFG LDAGANDYIK KPFEFEELLA RIRVQLRNKN
RNDDSLNAGI LNINPVTHQV FCASTEVTLT PKEFALLEYL VRNKDRVCTR SRIIEHVWDI
HFDSDTSVID VYITFLRRKL EAAGCGNIIQ TIRGVGYIVR EPEISKT