More than 300 homologs were found in PanDaTox collection
for query gene Tpau_1270 on replicon NC_014158
Organism: Tsukamurella paurometabola DSM 20162



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014158  Tpau_1270  binding-protein-dependent transport systems inner membrane component  100 
 
 
308 aa  606  9.999999999999999e-173  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4240  binding-protein-dependent transport systems inner membrane component  56.52 
 
 
301 aa  311  7.999999999999999e-84  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
292 aa  145  1e-33  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  38.31 
 
 
307 aa  144  2e-33  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  38.31 
 
 
307 aa  144  2e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
295 aa  143  3e-33  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0905  transmembrane permease MsmF  32.5 
 
 
289 aa  140  3.9999999999999997e-32  Clostridium perfringens SM101  Bacteria  normal  0.0122469  n/a   
 
 
-
 
NC_013739  Cwoe_4882  binding-protein-dependent transport systems inner membrane component  34.13 
 
 
313 aa  139  6e-32  Conexibacter woesei DSM 14684  Bacteria  normal  0.115668  normal 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  34.11 
 
 
298 aa  137  2e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
317 aa  136  5e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  35.15 
 
 
316 aa  135  6.0000000000000005e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_013739  Cwoe_3956  binding-protein-dependent transport systems inner membrane component  39.09 
 
 
309 aa  135  7.000000000000001e-31  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0750  binding-protein-dependent transport systems inner membrane component  34.93 
 
 
290 aa  133  3e-30  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0827  binding-protein-dependent transport systems inner membrane component  31.88 
 
 
299 aa  133  3.9999999999999996e-30  Petrotoga mobilis SJ95  Bacteria  normal  0.175132  n/a   
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
310 aa  133  5e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_013526  Tter_2615  binding-protein-dependent transport systems inner membrane component  38.55 
 
 
307 aa  132  5e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000296099  n/a   
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  35.87 
 
 
311 aa  133  5e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  34.41 
 
 
314 aa  132  6.999999999999999e-30  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_014165  Tbis_2715  binding-protein-dependent transporter inner membrane component  32.1 
 
 
350 aa  132  6.999999999999999e-30  Thermobispora bispora DSM 43833  Bacteria  normal  0.392142  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
299 aa  132  6.999999999999999e-30  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  34.72 
 
 
314 aa  132  7.999999999999999e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  37.73 
 
 
313 aa  132  9e-30  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_012669  Bcav_1699  binding-protein-dependent transport systems inner membrane component  35.1 
 
 
315 aa  132  1.0000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.258357  normal 
 
 
-
 
NC_009972  Haur_1151  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
314 aa  131  1.0000000000000001e-29  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.59424  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  35.22 
 
 
321 aa  130  2.0000000000000002e-29  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3894  binding-protein-dependent transport systems inner membrane component  35.17 
 
 
326 aa  131  2.0000000000000002e-29  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  35.59 
 
 
316 aa  131  2.0000000000000002e-29  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  33.77 
 
 
316 aa  131  2.0000000000000002e-29  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  34.95 
 
 
294 aa  130  2.0000000000000002e-29  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_012669  Bcav_0555  binding-protein-dependent transport systems inner membrane component  34.13 
 
 
328 aa  130  3e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.913769 
 
 
-
 
NC_009654  Mmwyl1_2714  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
293 aa  130  3e-29  Marinomonas sp. MWYL1  Bacteria  normal  0.548655  normal 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
300 aa  129  5.0000000000000004e-29  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29410  carbohydrate ABC transporter membrane protein  37.55 
 
 
322 aa  129  6e-29  Brachybacterium faecium DSM 4810  Bacteria  normal  0.899558  n/a   
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  31.54 
 
 
320 aa  129  7.000000000000001e-29  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  35 
 
 
287 aa  128  1.0000000000000001e-28  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
320 aa  128  1.0000000000000001e-28  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_011830  Dhaf_2160  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
292 aa  128  1.0000000000000001e-28  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.07173  n/a   
 
 
-
 
NC_009664  Krad_2544  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
313 aa  128  1.0000000000000001e-28  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
308 aa  128  1.0000000000000001e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  35.61 
 
 
288 aa  127  2.0000000000000002e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
309 aa  127  3e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  32.03 
 
 
300 aa  127  3e-28  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0524  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
303 aa  127  3e-28  Petrotoga mobilis SJ95  Bacteria  normal  0.693678  n/a   
 
 
-
 
NC_013947  Snas_0204  binding-protein-dependent transport systems inner membrane component  31.15 
 
 
299 aa  126  4.0000000000000003e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.497209  normal  0.169553 
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
299 aa  126  5e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011370  Rleg2_6091  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
292 aa  125  7e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
299 aa  125  7e-28  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  31.16 
 
 
311 aa  125  8.000000000000001e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011661  Dtur_0507  binding-protein-dependent transport systems inner membrane component  30.46 
 
 
299 aa  125  9e-28  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000030377  n/a   
 
 
-
 
NC_009654  Mmwyl1_0774  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
293 aa  124  1e-27  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2484  binding-protein-dependent transport systems inner membrane component  27.21 
 
 
318 aa  124  1e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.575298  n/a   
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  34.32 
 
 
309 aa  124  2e-27  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_0563  binding-protein dependent transport system inner membrane protein  33.7 
 
 
294 aa  124  3e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  0.22835  normal  0.0558608 
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  28.72 
 
 
295 aa  124  3e-27  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_013131  Caci_2030  binding-protein-dependent transport systems inner membrane component  34.19 
 
 
297 aa  123  3e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.185813 
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  35.14 
 
 
316 aa  124  3e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4135  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
299 aa  124  3e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  33.22 
 
 
293 aa  124  3e-27  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0253  binding-protein-dependent transport systems inner membrane component  31.28 
 
 
293 aa  124  3e-27  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1315  ABC transporter, permease protein  34.2 
 
 
301 aa  123  4e-27  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_007513  Syncc9902_1051  lactose transport system permease protein  33 
 
 
306 aa  123  5e-27  Synechococcus sp. CC9902  Bacteria  normal  0.390377  n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  30.53 
 
 
315 aa  123  5e-27  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3142  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
325 aa  123  5e-27  Arthrobacter sp. FB24  Bacteria  normal  0.406302  n/a   
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  31.43 
 
 
318 aa  122  5e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_011884  Cyan7425_0944  binding-protein-dependent transport systems inner membrane component  34.88 
 
 
290 aa  122  6e-27  Cyanothece sp. PCC 7425  Bacteria  normal  0.120711  normal  0.307929 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
306 aa  122  6e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_014212  Mesil_2465  binding-protein-dependent transport systems inner membrane component  35.93 
 
 
296 aa  122  6e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  0.603266  normal  0.170133 
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  31.79 
 
 
318 aa  122  6e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_011886  Achl_3270  binding-protein-dependent transport systems inner membrane component  32.33 
 
 
321 aa  122  7e-27  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
308 aa  122  7e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_013131  Caci_3156  binding-protein-dependent transport systems inner membrane component  34.13 
 
 
304 aa  122  8e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.024116  normal  0.392098 
 
 
-
 
NC_011071  Smal_2682  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
293 aa  122  9e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.990678  normal 
 
 
-
 
NC_013526  Tter_2645  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
311 aa  121  9.999999999999999e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  32.88 
 
 
293 aa  121  9.999999999999999e-27  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  36.13 
 
 
322 aa  122  9.999999999999999e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_013205  Aaci_0914  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
310 aa  121  1.9999999999999998e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3898  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
324 aa  121  1.9999999999999998e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5026  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
296 aa  120  1.9999999999999998e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0515819  normal  0.562108 
 
 
-
 
NC_013093  Amir_2919  binding-protein-dependent transport systems inner membrane component  32.27 
 
 
310 aa  120  3e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0131  binding-protein-dependent transport systems inner membrane component  33.97 
 
 
319 aa  120  3e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.128042  n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
305 aa  120  3e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0898  binding-protein-dependent transport systems inner membrane component  32.96 
 
 
319 aa  120  3e-26  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.14469  n/a   
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  33.47 
 
 
314 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5709  ABC transporter membrane spanning protein (sugar)  32.87 
 
 
316 aa  120  3.9999999999999996e-26  Agrobacterium vitis S4  Bacteria  normal  0.673224  n/a   
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  37.5 
 
 
305 aa  119  3.9999999999999996e-26  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_0513  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
314 aa  119  6e-26  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
315 aa  119  6e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_008781  Pnap_0229  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
312 aa  119  6e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.772545  normal  0.492978 
 
 
-
 
NC_009436  Ent638_3289  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
296 aa  119  6e-26  Enterobacter sp. 638  Bacteria  normal  normal  0.243021 
 
 
-
 
NC_010159  YpAngola_A2645  oligogalacturonide ABC tansporter, permease  33.82 
 
 
296 aa  119  6e-26  Yersinia pestis Angola  Bacteria  normal  0.952468  normal  0.0439933 
 
 
-
 
NC_014165  Tbis_1885  binding-protein-dependent transporter inner membrane component  35.19 
 
 
317 aa  119  7e-26  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.44963 
 
 
-
 
NC_007493  RSP_1443  ABC sugar transporter, inner membrane subunit  35.11 
 
 
303 aa  119  7e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0903613  n/a   
 
 
-
 
NC_013172  Bfae_29440  permease component of ABC-type sugar transporter  32.56 
 
 
318 aa  119  7e-26  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0092  binding-protein-dependent transport systems inner membrane component  35.11 
 
 
296 aa  119  7e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3983  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
302 aa  118  9.999999999999999e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.159905  normal 
 
 
-
 
NC_009708  YpsIP31758_1691  oligogalacturonide ABC tansporter, permease protein  33.95 
 
 
296 aa  118  9.999999999999999e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.041328  n/a   
 
 
-
 
NC_010465  YPK_1801  binding-protein-dependent transport systems inner membrane component  33.95 
 
 
296 aa  118  9.999999999999999e-26  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.780468  n/a   
 
 
-
 
NC_011899  Hore_15550  binding-protein-dependent transport systems inner membrane component  31.07 
 
 
294 aa  117  1.9999999999999998e-25  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_07470  carbohydrate ABC transporter membrane protein  35.38 
 
 
304 aa  117  1.9999999999999998e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0290  binding-protein-dependent transport systems inner membrane component  33.72 
 
 
297 aa  117  1.9999999999999998e-25  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
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