Gene Caci_5026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5026 
Symbol 
ID8336380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5757444 
End bp5758334 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content67% 
IMG OID644958125 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003115727 
Protein GI256394163 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0515819 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.562108 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCTC CGGCACTCCG GCAGCGCGGC GAGAGCGCCC TGGGCGCGAT CGCCGTGCTG 
GCCCTCGGTT TGTACGCGCT GTTCATCGTC GTGCCGGTGA TCATGAGCGC GTGGAAGAGC
CTGACCGACG AGAACCCGCT GCTGGCGCAC GCGAAGTTCG TCGGCGTGTC CAACTACACC
GACATGCTGC ACGACGACGC CTTGACGGCG AGTCTCACCT TCACGCTGGT CACCGCGCTG
ACGGTGACGC TCGTCGCCAA CGTCGCGGGC ATCGGGTTCG CGATGCTGCT GAACAAGACT
TCGCTGAGTT TCCGCATGAT GCGCACGGTC GCATTCCTGC CGCAGGTGCT GTCCGGCGTC
ATCGTCGGCT TCGTCTGGCG CTACATCCTG GCGCAGGACG GCATCCTCAA TCATCTGCTG
CTCAGCGCCG GGATCATCGG GCGCCCGATC ACCTGGCTGG GCAGCCCGCA CCTGGCGATG
TTCTCTGTCG GGCTGGTCGC CGCGTGGGTG CTGACCGGGT TCACCACGGT CGTGCACCTG
GCGGCGCTGC AGTCGGTTCC GGTCGAGCTG TACCAGGCGG CCACGGTCGA CGGCGCGGGG
CGCTGGCAGC GGTTCCGCCA GATCACGCTG CCGATGGTGG CTCCCGGTAC GACAATCAGC
GTCACGATCT CGCTGATCAC GACGCTGAAG CTGTACGACA TCATCGCGGC GCTGACGTCC
GGTGGTCCGG CGAACTCCAC GCAGTCCACT GCGTTGTACA TCGTCAATCT CGCGTTCACA
GACGACCGGT TCGGCTATGC CTCGGCGGTG GCGATGCTGC TGCTGGTGGT CTCGGCGGCG
ATCGCGCTCA GCGTGACCGG GTTGCTTCGG CGCCGGGAGG TGGACCTGTG A
 
Protein sequence
MTSPALRQRG ESALGAIAVL ALGLYALFIV VPVIMSAWKS LTDENPLLAH AKFVGVSNYT 
DMLHDDALTA SLTFTLVTAL TVTLVANVAG IGFAMLLNKT SLSFRMMRTV AFLPQVLSGV
IVGFVWRYIL AQDGILNHLL LSAGIIGRPI TWLGSPHLAM FSVGLVAAWV LTGFTTVVHL
AALQSVPVEL YQAATVDGAG RWQRFRQITL PMVAPGTTIS VTISLITTLK LYDIIAALTS
GGPANSTQST ALYIVNLAFT DDRFGYASAV AMLLLVVSAA IALSVTGLLR RREVDL