Gene Rpal_0131 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0131 
Symbol 
ID6407774 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp144550 
End bp145509 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content65% 
IMG OID642710040 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001989169 
Protein GI192288564 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.128042 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGAGG TGGCGATGTC TGACGCTGCC GTCTCGCTGC GCGATCTCGA TGCGCTCACA 
ACCGCGCGCG CGTCGGCCAA GCCGCGTCGC CGTGGCCGCG GCACCGTCGC CTACGGTCTG
GTCGCGCCGG CGTTCACGCT GATGCTGCTG ATGCTGCTCG GCCCACTCGC CGGCGTGATC
GCGCTGTCGT TCACCGATTA TCAGCTCGGC GCGCCGTCGT TCGCCTGGAT TGGCCTTGCC
AATTATCAGC AGCTGTTCGC CGACCGGGTG TTCTGGATCT CGCTGATCAA TACGTTGACC
TATGCGGTGA TCGTGGTGCC GGGCTCGGTC GCGCTCGGCC TCGGCGTGGC GATGCTGATC
GAGAGTGGCA CGCATCTTCG TGCCTTCTAT CGCACCATCT ACTTTCTGCC GGTGATGGCG
ACCCTGATCG CGATGGCGAT CGTCTGGGAG TTCATGCTGC ACCCGCAGTT CGGCCTGGTG
AACGGGCTGA TCAAGATGGT CGGCCTCGCG CCGCATCCCT GGCTGCAGGA TCGTGGCACC
GCGCTGTATG CACTGTGCGC GATCGGGATC TGGCAGGCGG TCGGTTTCAA CATGGTGCTG
TTCCTCGCCG GGCTGATGTC GATCCCCAAG CATCTCTATG ACGCCGCCGA GATCGATGGC
GCCGCGAGTG CGTGGTCGCG GTTCCGGCTG GTGACCTGGC CGATGCTCGG ACCGGTGACG
CTGTTCGTGG TGGTGATCAC CGGCATCCGG TCGTTCCAGG TGTTCGACAC TGTGCACGTC
CTCACCAAGG GCGGCCCGTC GAAATCCACC GAGGTGCTGA TCCACACCAT GTACATGGAG
GGCTTCGAGT TCTTCCGCTC CGGCTATGCC GCCGCGGTGA CCGTGGTGTT CCTCGGCCTG
GTGCTGCTGC TGACCCTGGT GAAATCGCGG CTCGCCGCCA AGCAGGTGCA CTACGCATGA
 
Protein sequence
MSEVAMSDAA VSLRDLDALT TARASAKPRR RGRGTVAYGL VAPAFTLMLL MLLGPLAGVI 
ALSFTDYQLG APSFAWIGLA NYQQLFADRV FWISLINTLT YAVIVVPGSV ALGLGVAMLI
ESGTHLRAFY RTIYFLPVMA TLIAMAIVWE FMLHPQFGLV NGLIKMVGLA PHPWLQDRGT
ALYALCAIGI WQAVGFNMVL FLAGLMSIPK HLYDAAEIDG AASAWSRFRL VTWPMLGPVT
LFVVVITGIR SFQVFDTVHV LTKGGPSKST EVLIHTMYME GFEFFRSGYA AAVTVVFLGL
VLLLTLVKSR LAAKQVHYA