155 homologs were found in PanDaTox collection
for query gene Svir_08450 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_08450  hypothetical protein  100 
 
 
422 aa  857    Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1362  hypothetical protein  53.68 
 
 
438 aa  466  9.999999999999999e-131  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0529728  normal  0.404278 
 
 
-
 
NC_014210  Ndas_2914  hypothetical protein  51.43 
 
 
432 aa  404  1e-111  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0970289 
 
 
-
 
NC_009831  Ssed_1941  hypothetical protein  41.78 
 
 
428 aa  345  1e-93  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0907  hypothetical protein  43.6 
 
 
433 aa  337  2.9999999999999997e-91  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.68427  normal 
 
 
-
 
NC_008345  Sfri_3838  hypothetical protein  42.12 
 
 
428 aa  336  5e-91  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1112  hypothetical protein  41.65 
 
 
433 aa  330  3e-89  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1497  hypothetical protein  39.86 
 
 
433 aa  310  2.9999999999999997e-83  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1253  hypothetical protein  41.13 
 
 
444 aa  309  5e-83  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.325224 
 
 
-
 
NC_008340  Mlg_1720  hypothetical protein  37.59 
 
 
432 aa  289  8e-77  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.26756  normal  0.377885 
 
 
-
 
NC_010718  Nther_1610  hypothetical protein  22.75 
 
 
423 aa  120  4.9999999999999996e-26  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00000000640568  unclonable  5.93437e-23 
 
 
-
 
NC_010524  Lcho_1717  hypothetical protein  28.88 
 
 
468 aa  120  7e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000202258 
 
 
-
 
NC_010718  Nther_0433  hypothetical protein  24.1 
 
 
426 aa  118  3e-25  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_1771  SMP-30/gluconolaconase/LRE-like region  26.2 
 
 
740 aa  88.6  2e-16  Trichodesmium erythraeum IMS101  Bacteria  normal  0.212253  normal 
 
 
-
 
NC_009953  Sare_0573  phosphoribosylglycinamide synthetase  26.39 
 
 
420 aa  68.6  0.0000000002  Salinispora arenicola CNS-205  Bacteria  normal  0.23534  normal  0.22349 
 
 
-
 
NC_013525  Tter_1164  protein of unknown function DUF201  27.13 
 
 
437 aa  58.5  0.0000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_005707  BCE_A0170  phosphoribosylglycinamide synthetase ATP-grasp domain-containing protein  22.65 
 
 
407 aa  55.5  0.000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011777  BCAH820_B0292  phosphoribosylglycinamide synthetase, ATP-grasp  22.65 
 
 
407 aa  55.5  0.000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010513  Xfasm12_0452  carbamoyl phosphate synthase large subunit  24.08 
 
 
1080 aa  53.5  0.000007  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0393  carbamoyl phosphate synthase large subunit  24.08 
 
 
1080 aa  53.5  0.000007  Xylella fastidiosa M23  Bacteria  normal  0.803496  n/a   
 
 
-
 
NC_011831  Cagg_2251  phosphoribosylglycinamide synthetase  26.79 
 
 
418 aa  53.1  0.00001  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000000511987 
 
 
-
 
NC_013159  Svir_33390  biotin carboxylase  24.73 
 
 
428 aa  50.8  0.00004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.465269 
 
 
-
 
NC_008578  Acel_1298  carbamoyl-phosphate synthase large subunit  37.21 
 
 
1093 aa  51.2  0.00004  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.0243124 
 
 
-
 
NC_011886  Achl_1999  carbamoyl phosphate synthase large subunit  32.33 
 
 
1109 aa  50.4  0.00006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000570089 
 
 
-
 
NC_010831  Cphamn1_0534  Carbamoyl-phosphate synthase L chain ATP-binding  23.67 
 
 
495 aa  49.7  0.00009  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.701669  normal 
 
 
-
 
NC_007512  Plut_1651  carbamoyl-phosphate synthase, medium subunit  30.17 
 
 
492 aa  49.3  0.0001  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2272  carbamoyl-phosphate synthase, large subunit  35.63 
 
 
1030 aa  49.3  0.0001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1812  carbamoyl phosphate synthase large subunit  27.59 
 
 
1080 aa  49.3  0.0001  Stenotrophomonas maltophilia R551-3  Bacteria  decreased coverage  0.00557421  normal  0.0258544 
 
 
-
 
NC_014151  Cfla_1846  carbamoyl-phosphate synthase, large subunit  40.58 
 
 
1111 aa  48.9  0.0002  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.422098 
 
 
-
 
NC_007514  Cag_0173  carbamoyl-phosphate synthase, medium subunit  29.31 
 
 
492 aa  48.5  0.0002  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_12690  carbamoyl-phosphate synthase large subunit  37.68 
 
 
1118 aa  48.5  0.0002  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0359466  normal  0.0639836 
 
 
-
 
NC_008541  Arth_2262  carbamoyl phosphate synthase large subunit  31.58 
 
 
1099 aa  48.9  0.0002  Arthrobacter sp. FB24  Bacteria  normal  0.133094  n/a   
 
 
-
 
NC_008639  Cpha266_0530  carbamoyl-phosphate synthase large subunit  30.17 
 
 
492 aa  48.9  0.0002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1712  carbamoyl-phosphate synthase, large subunit  39.13 
 
 
1126 aa  48.5  0.0002  Xylanimonas cellulosilytica DSM 15894  Bacteria  decreased coverage  0.00812238  n/a   
 
 
-
 
NC_009675  Anae109_2072  carbamoyl phosphate synthase large subunit  22.27 
 
 
1083 aa  48.5  0.0002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.471557 
 
 
-
 
NC_009921  Franean1_1710  carbamoyl phosphate synthase large subunit  39.13 
 
 
1136 aa  48.5  0.0002  Frankia sp. EAN1pec  Bacteria  normal  hitchhiker  0.00485747 
 
 
-
 
NC_010717  PXO_00086  carbamoyl phosphate synthase large subunit  27.59 
 
 
1080 aa  48.9  0.0002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0639  carbamoyl-phosphate synthase, large subunit  27.83 
 
 
1079 aa  48.1  0.0003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_1699  carbamoyl-phosphate synthase, large subunit  24.85 
 
 
1100 aa  48.1  0.0003  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.54095  n/a   
 
 
-
 
NC_011206  Lferr_0789  carbamoyl-phosphate synthase, large subunit  27.83 
 
 
1079 aa  48.1  0.0003  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008817  P9515_09001  carbamoyl-phosphate synthase, large subunit  41.38 
 
 
1100 aa  48.1  0.0003  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1432  hypothetical protein  24.53 
 
 
424 aa  48.1  0.0003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.502147  normal 
 
 
-
 
NC_013595  Sros_2808  carbamoyl-phosphate synthase, large subunit  37.68 
 
 
1097 aa  47.4  0.0004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007577  PMT9312_0975  carbamoyl-phosphate synthase large subunit  41.38 
 
 
1098 aa  47.4  0.0004  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_12580  carbamoyl phosphate synthase large subunit  31.71 
 
 
1101 aa  47.8  0.0004  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0991038  n/a   
 
 
-
 
NC_013174  Jden_1321  carbamoyl-phosphate synthase, large subunit  30.19 
 
 
1109 aa  47.8  0.0004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.149141 
 
 
-
 
NC_008312  Tery_2877  carbamoyl phosphate synthase large subunit  34.38 
 
 
1076 aa  47.4  0.0005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.1435 
 
 
-
 
NC_008816  A9601_10451  carbamoyl-phosphate synthase, large subunit  41.38 
 
 
1098 aa  47.4  0.0005  Prochlorococcus marinus str. AS9601  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_10451  carbamoyl-phosphate synthase, large subunit  41.38 
 
 
1098 aa  47.4  0.0005  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1864  carbamoyl-phosphate synthase, large subunit  29.31 
 
 
1082 aa  47.4  0.0005  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000611023  n/a   
 
 
-
 
NC_010483  TRQ2_0380  carbamoyl-phosphate synthase, large subunit  34.18 
 
 
1099 aa  47.4  0.0005  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1423  protein of unknown function DUF201  25.52 
 
 
424 aa  47.4  0.0005  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
NC_010803  Clim_0467  Carbamoyl-phosphate synthase L chain ATP-binding  29.31 
 
 
495 aa  47.4  0.0005  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2079  carbamoyl-phosphate synthase, large subunit  29.31 
 
 
1082 aa  47.4  0.0005  Geobacter lovleyi SZ  Bacteria  normal  0.0359545  n/a   
 
 
-
 
NC_011060  Ppha_0649  Carbamoyl-phosphate synthase L chain ATP-binding  29.31 
 
 
492 aa  47.4  0.0005  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1672  carbamoyl phosphate synthase large subunit  36.23 
 
 
1107 aa  47  0.0006  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0917  carbamoyl-phosphate synthase, large subunit  34.78 
 
 
1131 aa  47  0.0006  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_2038  carbamoyl-phosphate synthase, large subunit  33.02 
 
 
1109 aa  47.4  0.0006  Beutenbergia cavernae DSM 12333  Bacteria  normal  hitchhiker  0.00373357 
 
 
-
 
NC_002939  GSU1276  carbamoyl-phosphate synthase, large subunit  28.45 
 
 
1081 aa  47  0.0007  Geobacter sulfurreducens PCA  Bacteria  normal  0.104945  n/a   
 
 
-
 
NC_007517  Gmet_1774  carbamoyl-phosphate synthase large subunit  28.45 
 
 
1081 aa  47  0.0007  Geobacter metallireducens GS-15  Bacteria  decreased coverage  0.00000157385  normal  0.0854041 
 
 
-
 
NC_009486  Tpet_0363  carbamoyl-phosphate synthase, large subunit  34.18 
 
 
1099 aa  46.6  0.0007  Thermotoga petrophila RKU-1  Bacteria  normal  0.948928  n/a   
 
 
-
 
NC_009664  Krad_3001  carbamoyl-phosphate synthase, large subunit  29.31 
 
 
1104 aa  47  0.0007  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.105986  normal  0.458872 
 
 
-
 
NC_013161  Cyan8802_0645  carbamoyl phosphate synthase large subunit  29.31 
 
 
1081 aa  47  0.0007  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.796539 
 
 
-
 
NC_011726  PCC8801_0628  carbamoyl phosphate synthase large subunit  29.31 
 
 
1081 aa  47  0.0007  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_1893  carbamoyl phosphate synthase large subunit  34.78 
 
 
1097 aa  46.6  0.0008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.457655 
 
 
-
 
NC_011891  A2cp1_1518  protein of unknown function DUF201  25.22 
 
 
424 aa  46.6  0.0008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3153  carbamoyl-phosphate synthase large subunit  36.23 
 
 
1105 aa  45.8  0.001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00184389 
 
 
-
 
NC_011126  HY04AAS1_1120  Carbamoyl-phosphate synthase L chain ATP-binding  30.17 
 
 
554 aa  46.2  0.001  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2340  carbamoyl-phosphate synthase, large subunit  36.23 
 
 
1110 aa  45.8  0.001  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2440  biotin carboxylase-like  25.73 
 
 
424 aa  46.2  0.001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.459774  n/a   
 
 
-
 
NC_007777  Francci3_3198  carbamoyl phosphate synthase large subunit  37.68 
 
 
1130 aa  46.2  0.001  Frankia sp. CcI3  Bacteria  decreased coverage  0.00397433  normal 
 
 
-
 
NC_008025  Dgeo_2070  carbamoyl phosphate synthase large subunit  36.78 
 
 
1029 aa  46.2  0.001  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008599  CFF8240_0319  carbamoyl phosphate synthase large subunit  26.72 
 
 
1084 aa  46.2  0.001  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3102  carbamoyl-phosphate synthase, large subunit  37.68 
 
 
1100 aa  46.2  0.001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2611  carbamoyl-phosphate synthase large subunit  24.77 
 
 
1056 aa  46.2  0.001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.994048 
 
 
-
 
NC_014248  Aazo_0571  carbamoyl-phosphate synthase large subunit  27.59 
 
 
1094 aa  46.2  0.001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1147  carbamoyl-phosphate synthase, large subunit  25.23 
 
 
1089 aa  45.8  0.001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.382721  normal 
 
 
-
 
NC_013946  Mrub_0916  carbamoyl-phosphate synthase large subunit  33.33 
 
 
1038 aa  46.2  0.001  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.150361 
 
 
-
 
NC_009565  TBFG_11413  carbamoyl phosphate synthase large subunit  34.78 
 
 
1115 aa  45.8  0.001  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00750159  normal  0.0530566 
 
 
-
 
NC_011146  Gbem_1900  carbamoyl-phosphate synthase, large subunit  28.45 
 
 
1082 aa  46.2  0.001  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00662116  n/a   
 
 
-
 
NC_012918  GM21_2308  carbamoyl-phosphate synthase, large subunit  28.45 
 
 
1082 aa  46.2  0.001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011059  Paes_0489  Carbamoyl-phosphate synthase L chain ATP-binding  22.86 
 
 
495 aa  46.2  0.001  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1467  carbamoyl phosphate synthase large subunit  28.42 
 
 
1085 aa  45.4  0.002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2405  carbamoyl-phosphate synthase, large subunit  30.17 
 
 
1099 aa  45.4  0.002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_3085  carbamoyl-phosphate synthase large subunit  28.45 
 
 
1076 aa  45.1  0.002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_0811  carbamoyl phosphate synthase large subunit  24.26 
 
 
1084 aa  45.1  0.002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1292  carbamoyl phosphate synthase large subunit  24.26 
 
 
1084 aa  45.1  0.002  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4206  carbamoyl-phosphate synthase, large subunit  28.45 
 
 
1077 aa  45.4  0.002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.412079  normal 
 
 
-
 
NC_013757  Gobs_3132  carbamoyl-phosphate synthase, large subunit  36.23 
 
 
1101 aa  45.4  0.002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.288772  n/a   
 
 
-
 
NC_009380  Strop_1856  carbamoyl-phosphate synthase, large subunit  34.88 
 
 
1115 aa  45.4  0.002  Salinispora tropica CNB-440  Bacteria  normal  normal  0.977925 
 
 
-
 
NC_011729  PCC7424_5230  carbamoyl phosphate synthase large subunit  35.44 
 
 
1082 aa  45.1  0.002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009714  CHAB381_1350  carbamoyl phosphate synthase large subunit  31.88 
 
 
1086 aa  45.4  0.002  Campylobacter hominis ATCC BAA-381  Bacteria  normal  0.501423  n/a   
 
 
-
 
NC_009767  Rcas_3357  carbamoyl-phosphate synthase, large subunit  43.75 
 
 
1112 aa  45.1  0.002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0060  carbamoyl-phosphate synthase, large subunit  36.36 
 
 
1065 aa  45.4  0.002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4931  carbamoyl-phosphate synthase, large subunit  24.3 
 
 
1052 aa  45.1  0.002  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.324611 
 
 
-
 
NC_010508  Bcenmc03_1263  carbamoyl phosphate synthase large subunit  24.26 
 
 
1084 aa  45.1  0.002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.522789  normal  0.213082 
 
 
-
 
NC_010571  Oter_0679  carbamoyl-phosphate synthase, large subunit  28.45 
 
 
1095 aa  45.4  0.002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0085  carbamoylphosphate synthase large subunit  36.23 
 
 
1127 aa  45.4  0.002  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp2678  carbamoyl-phosphate synthase large subunit  25.86 
 
 
1067 aa  44.7  0.003  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_3012  carbamoyl-phosphate synthase, large subunit  36.23 
 
 
1107 aa  44.7  0.003  Thermomonospora curvata DSM 43183  Bacteria  normal  0.541011  n/a   
 
 
-
 
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