Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3357 |
Symbol | |
ID | 5540856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4383722 |
End bp | 4387060 |
Gene Length | 3339 bp |
Protein Length | 1112 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640895475 |
Product | carbamoyl-phosphate synthase, large subunit |
Protein accession | YP_001433425 |
Protein GI | 156743296 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism |
COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACGAC GAACTGATAT TCAGACGATT TTGATCATCG GCTCTGGCCC GATAGTTATC GGTCAGGCAT GCGAATTCGA CTATTCTGGC GTTCAGGCGT GCAAGGTGCT GCGCCGCGAG GGGTTTCGCG TCGTGCTCGT CAATTCCAAT CCGGCGACAA TCATGACCGA CCCGCAGATG GCAGACGCCA CCTATATTGA ACCGTTGACC CCGGAGATCG TCGAGAAAAT TATCGAGCGC GAACGACCCG ACGCGCTGCT CCCGACCGTC GGCGGGCAGA CGGGTCTCAA CCTGGCGATG AAACTGGCAG AGCGCGGCGT GCTCGATCGG TACGGCGTGC AGTTGATTGG CGCTTCGCCG AAAGCCATTG CGCTTGCCGA GGATCGCGAG TTGTTCAAGC GCGCGATGAT TGACGCCGGG CTGCGCGTGC CGCTCGGCGA AACAGTTTCG ACCGTCGATC AGGCGCTGGA GGCGGCGGCG CGGATCGGCT ACCCGGTGCT GGTGCGTCCC TCCTTTACCC TCGGTGGCAG TGGCGGTGGT GTGGCGTATA GTGAGGCGCA ATTGCGCGAG ATTGCGGATC GCGGTCTACG CGCCTCGCCG GTGACGCAGG TGCTCATCGA ACAGTCGGTG CTCGGATGGA AGGAGTACGA ACTTGAGGTG ATGCGCGATC GGATGGACAA CTTCGTTGTT GTCTGTTCTA TCGAGAACCT CGACCCGATG GGCGTCCATA CCGGCGACTC GATCACCATT GCTCCGACGA TGACGCTGAC CGACCGCGAG TATCAGCGGC TGCGCGAGAT GGCGAAGATC GTCATTCGCA CGGTCGGCGT CGAAACCGGT GGCTCGAACA TCCAGTTTGC CGTTGATCCA CGCGATGGCA CGCCGCTCGT GATCGAGATG AACCCGCGCG TCAGCCGCTC GTCGGCGCTG GCGTCCAAAG CCACCGGCTT CCCAATCGCC AAGATCGCGG CGCTGCTCGC CGTCGGTTAT ACCCTCGACG AAATCCCGAA CGATATTACG CGCGTGACGC CTGCGTCGTT CGAGCCAAGC CTGGACTATG TGGTGGTCAA AATCCCACGC TGGGCGTTCG AGAAGTTCCC CGGCGTCGAT CCGACTCTCG GACCACAGAT GAAGAGCGTG GGCGAGGTTA TGGCGATTGG TGCGACGTTC AGCGAGGCGT TGCAGAAGGC GATCCGCGGG CTGGAGATCG GCGCTGTCGG GTTCGGTGTG TTCGCCGGGA AACGCGTGAA CGCTGAAATG ACGCCTGAGC CATCGGACGA TGACCTGCGC ACTCCGACGG CACAGCGTAT CTTTCACGTT GCCAATGCGC TGCGCGCTGG ATGGGACATC GAGCGGATCG CGGCGCTGAC CGGCTATGAT CCCTGGTTTG TGGCGCAGAT GCGCGCGATC ATCGACATCG AAACGGCGCT TGCGCGTTAT TCGCTTGCAA CGCTCCCTGT CGATCTGCTA CGTGAGGCGA AGGAACATGG CTTCTCCGAC GCGCAGATCG CACTCATTCT GCAACCGGAC CTTCGTAATG GTACGTTTCA CGTTCCGACT GAGATGGATG TGCGCGCGCG TCGTAAGGCG CTCGGCATTC TGCCGGTCTA TCATCGGATC GACACCTGCG CCGCTGAGTT TGAAGCCTAC ACCCCCTACC TCTATAGCAC CTATGCGACA TCCGATGAGT CGGCGGTGAC CGACCGCCCG AAGGTGGTCA TTCTCGGCGG TGGACCCAAT CGCATTGGTC AGGGGATCGA GTTCGACTAC TGCTGCGTCC ACGCCAGTTT TGCGCTGCGC GACCTCGGCT ACGAGACGAT CATGATCAAC TGCAACCCGG AAACGGTCTC AACCGACTAT GATACCAGTG ATCGCCTCTA CTTCGAGCCG CTGACTCTCG AAGATGTGCT TAATGTCTGG GAGAACGAGT CGGGCATGCG GGACGGCAGG GCAGGAACGC CTGTGCCAAT GCTCGTGCAG TTTGGCGGTC AGACGCCGCT CAATCTGGCG AAAGGGCTGG CAGCGGCTGG TGTGCCGATC TGGGGCACCT CGCAAGACTC GATTGATCTG GCAGAGGATC GCGGGCGCTT TAGCGAACTG CTCCGGCAGT TGGACATGAT GCAACCGGAG AGCGGCATGG CTGCCGACCT TCAGACTGCC CGGCGAGTGG CGCAGCGGAT TGGCTACCCG GTGCTGGTGC GTCCCAGTTA TGTGCTCGGC GGGCGGGCAA TGGCAATTGC CTACGATGAT GAAGGACTGG CGCAGTATAT CCACGAAGCG ACACAGATCA GCGCCGGTCA ACCGGTGTTG ATCGACCGCT ACCTGGAGGA TGCTTTCGAA CTCGATGTCG ATGCTGTCGG TGATGGCGAG CGCGTGGTGA TCGGCGGCAT TATGGAGCAT ATTGAGGAGG CTGGCGTCCA CTCTGGCGAC TCGGCAATGG TCATGCCGCC GTTCAAGGTC AGCGCCTATC ACCTTTCGAT CATCCGCGAC GAAACGATCC GCATTGGTGA GGCGCTGCGC GTCAAGGGGT TGATGAATAT TCAATTCGCC ATCAAGGACG ACGAGGTCTA TGTGCTCGAA GTCAATCCAC GCGCCTCGCG CACCGTGCCG TTCGTCGCCA AAGCCACCGG CGTGCCGCTG GCGCGTCTTG CTGCGCAGGC GTGTGCTGGC AAGACGCTGA TCGAACTCGG ATTGACGCGC GAGCCGCCGC TCAATGGCTT CTTCGTCAAG GAAGCCGTTT TGCCATTCGA TAAGTTCCCC GGCGCTGCCG TCTTCCTCAG CCCTGAGATG CGCTCCACCG GTGAGGTAAT GGGGCATGCT TCGACCTTCG GGCATGCCTT CGCCAAAGCC GAAATGGGCG CCAACCAGCG CATTCCTGTC AGCGGCGGCG CGCTGCTGAC GGTTAACGAC TACGATAAGG GTGCTATCGG GCGGATTGCC CGCGATCTGG TGAAATTCGG TTTTACTATC TACGCTACAC GCGGCACAGC AGCCTGGCTC CACCAGCTTG GTCTGCCCGC CATCGTTGTC AACAAGGTTT CCGAAGGCTC ACCCCATACC GTCGACCTGA TTGCGTCGGG CAAGGTGGGA TTGGTGATCA GTACCCCCCT CGGTCCACGC GCCTATGCCG ATGGTCAGGC GCTACGCTCG GCTGCCATTC GCTACGGGGT GATGCTGGTG ACGACCCTCA CCGGCGCAGC GGCGACGGTG AGCGCCATCA AGGCGTTGCG TCAGAAGGAA TTGCGCGTCC GTTCTTTGCA GGAACACTAT CGTCTGACAA TGACGGCAGA CAGCACGATA GTGAGCACAT CTCTGAAGAT CAATAAGGAA CTATCATGA
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Protein sequence | MPRRTDIQTI LIIGSGPIVI GQACEFDYSG VQACKVLRRE GFRVVLVNSN PATIMTDPQM ADATYIEPLT PEIVEKIIER ERPDALLPTV GGQTGLNLAM KLAERGVLDR YGVQLIGASP KAIALAEDRE LFKRAMIDAG LRVPLGETVS TVDQALEAAA RIGYPVLVRP SFTLGGSGGG VAYSEAQLRE IADRGLRASP VTQVLIEQSV LGWKEYELEV MRDRMDNFVV VCSIENLDPM GVHTGDSITI APTMTLTDRE YQRLREMAKI VIRTVGVETG GSNIQFAVDP RDGTPLVIEM NPRVSRSSAL ASKATGFPIA KIAALLAVGY TLDEIPNDIT RVTPASFEPS LDYVVVKIPR WAFEKFPGVD PTLGPQMKSV GEVMAIGATF SEALQKAIRG LEIGAVGFGV FAGKRVNAEM TPEPSDDDLR TPTAQRIFHV ANALRAGWDI ERIAALTGYD PWFVAQMRAI IDIETALARY SLATLPVDLL REAKEHGFSD AQIALILQPD LRNGTFHVPT EMDVRARRKA LGILPVYHRI DTCAAEFEAY TPYLYSTYAT SDESAVTDRP KVVILGGGPN RIGQGIEFDY CCVHASFALR DLGYETIMIN CNPETVSTDY DTSDRLYFEP LTLEDVLNVW ENESGMRDGR AGTPVPMLVQ FGGQTPLNLA KGLAAAGVPI WGTSQDSIDL AEDRGRFSEL LRQLDMMQPE SGMAADLQTA RRVAQRIGYP VLVRPSYVLG GRAMAIAYDD EGLAQYIHEA TQISAGQPVL IDRYLEDAFE LDVDAVGDGE RVVIGGIMEH IEEAGVHSGD SAMVMPPFKV SAYHLSIIRD ETIRIGEALR VKGLMNIQFA IKDDEVYVLE VNPRASRTVP FVAKATGVPL ARLAAQACAG KTLIELGLTR EPPLNGFFVK EAVLPFDKFP GAAVFLSPEM RSTGEVMGHA STFGHAFAKA EMGANQRIPV SGGALLTVND YDKGAIGRIA RDLVKFGFTI YATRGTAAWL HQLGLPAIVV NKVSEGSPHT VDLIASGKVG LVISTPLGPR AYADGQALRS AAIRYGVMLV TTLTGAAATV SAIKALRQKE LRVRSLQEHY RLTMTADSTI VSTSLKINKE LS
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