| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2405 |
|---|
| Symbol | |
|---|
| ID | 8333754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2722061 |
|---|
| End bp | 2725360 |
|---|
| Gene Length | 3300 bp |
|---|
| Protein Length | 1099 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644955558 |
|---|
| Product | carbamoyl-phosphate synthase, large subunit |
|---|
| Protein accession | YP_003113164 |
|---|
| Protein GI | 256391600 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAGC GTGAAGACCT CAAGTCCGTC CTGGTCGTCG GCTCCGGCCC GATCGTCATC
GGCCAGGCCG CCGAGTTCGA CTACTCCGGG ACCCAGGCCT GCCGCGTGCT GCGCAGCGAG
GGCCTGCGGG TCATCCTGGT GAACTCCAAC CCGGCGACGA TCATGACCGA CCCGGAGGTC
GCCGACGCCA CCTACGTCGA GCCGATCACC CCGGAGTTCG TCGAGAAGAT CATCGCCAAG
GAGCGCCCCG ACGCGCTGCT GCCGACATTG GGCGGCCAGA CCGCGCTGAA CACCGCGGTC
GCGCTCGCCG AGAACGGCGT CCTGGAGAAG TACAACGTCG AGCTGATCGG CGCCAACATC
GCGGCGATCC AGTCTGGCGA GGACCGCGAG AAGTTCAAGC GGATCGTGGA GACTATCGGC
GCCGAATCCG CGCGCTCGGT CATCTGCCAC TCCATGGAGG ACTGCCTGGC CGGCGTCGAG
GAACTCGGCG GCTACCCGGT CGTGGTCCGG CCCTCCTTCA CGATGGGCGG CGCCGGCTCC
GGCTTCGCGC ACAACGAGGA GGAGCTGCGC CGGATCGCCG GCACGGGCCT GGCGCTCTCG
CCGACCACCG AGGTGCTCCT GGAGGAGTCC ATCCTCGGCT GGAAGGAGTA CGAGCTGGAG
CTGATGCGCG ACAAGAACGA CAACGTCGTC GTGGTCTGCT CCATCGAGAA CTTCGACCCG
ATGGGCGTGC ACACCGGCGA CTCGATCACC GTCGCGCCGT CGATGACCCT GACCGACCGG
GAGTACCAGG AGCTGCGGGA CATCGGCATC GCGGTGATCC GCGCGGTCGG CGTCGACACC
GGCGGCTGCA ACATCCAGTT CGCGGTGAAC CCGGCCGACG GCCGCATCAT CGTGATCGAG
ATGAACCCGC GGGTCTCGCG CTCCTCGGCG CTGGCGTCCA AGGCGACCGG CTTCCCGATC
GCCAAGATCG CCGCGCGCCT GGCCGTCGGC TACACCCTGG ACGAGATCCC CAACGACATC
ACGCAGCAGA CCCCGGCCTC CTTCGAGCCG GCGCTGGACT ACGTGGTCGT GAAGGTGCCG
CGGTTCGCCT TCGAGAAGTT CCCGGCCGCC GACAGCACCC TGACGACCAC CATGAAGTCG
GTCGGCGAGG CCATGGCGAT CGGCCGCTCC TTCCCCGAGG CGCTGCAGAA GGCGCTGCGC
TCGCTGGAGA AGAAGGGCTC GGAGTTCACC TGGGTCGGTC CGGTCCGCGA CAAGGCGACC
GTGCTGACCG AGGCCGCGCG CCCCACCGAC GGCCGGGTCA ACCTGCTCGT CGAGGCCTAC
CGGGCCGGCG CGTCGATCTC CGAGCTGCAC GAGGCGACCA AGATCGACCC CTGGTTCCTG
GACCAGGTGC TGCTGATCCA CGAGACCGCC TGCGAGCTGC GCGACGCCGA GCGGCTCTCC
CCGGAGCTGC TGCACCGCGT GAAGCGGACC GGCTTCTCCG ACAAGCAGAT CGCCGACATC
CGGAACCTGG GCGAGTCGGT GGTCCGGGAG CTGCGGCACT CCCTGGGCGT GCGGCCGGTC
TACAAGACGG TCGACACCTG CGCAGCGGAG TTCGCCGCGC GCACGCCCTA CCACTACTCG
TCCTACGACG AGGAGACCGA GGTCGAGCCG CGCGCCAAGC CCGCGGTGAT CATCCTGGGC
TCCGGGCCCA ACCGGATCGG GCAGGGCATC GAGTTCGACT ACTCCTGCGT GCACGCCTCC
TTCGCGCTGC GGGACGCCGG CTACGAGACC ATCATGGTCA ACTGCAACCC CGAGACCGTC
TCCACCGACT ACGACACCTC CGACCGGCTG TACTTCGAGC CGCTGACGCT GGAGGACGTG
CTGGAGATCG TGGACGCCGA GCGCGCCGCG GGCCCGCTGG CCGGCGTCAT CGTGCAGCTC
GGCGGGCAGA CCCCGCTGGG TCTGGCGCAG GCGCTGAAGG ACGCCGGCGT GCCGGTGGTC
GGCACTTCGC CGGAGGCCAT CCACCTGGCC GAGGACCGGG GCGCCTTCGG GCGCGTGCTG
GCCGAGGCCG GGCTGCCGGC ACCCAAGCAC GGCACCGCGT TCTCCTTCGC CGAGGCCAAG
GCGATCGCCG ACGAGATCGG CTACCCGGTG CTGGTCCGGC CCTCCTACGT GCTGGGCGGG
CGGGGCATGG AGATCGTCTA CGACGAGACC ATGCTCCACG GCTACATCGA GCGCGCCACC
CAGATCTCCC CGGAGCACCC GGTGCTGGTC GACCGGTTCC TGGACGACGC GATCGAGATC
GACGTGGACG CCCTGTTCGA CGGCGAGGAG CTCTACCTCG GCGGCGTGAT GGAGCACATC
GAGGAGGCCG GCATCCACTC CGGGGACTCG GCGTGCGCGC TCCCCCCGAT CACCCTCGGC
GGGCACGACA TCAAGCGGCT GCGCGCCTCC ACCGAGGCGA TCGCCCGCGG CGTCGGGGTG
CGGGGTCTGA TCAACATCCA GTACGCGCTG GCCGGCGACA TCCTGTACGT CCTGGAGGCC
AACCCGCGCG CCTCGCGCAC GGTGCCGTTC GTGGCCAAGG CCACCGCGGT CCCGCTGGCC
AAGGCCGCGG CGCGCATCGG GCTGGGCGCC ACCGTCGCCG AGCTGCGCGC CGAAGGACTG
CTGCCCAGGG AGGGCGACGG CGGCACGCTG CCCCCGGACT CGCCGATCTC GGTGAAGGAA
GCGGTCATGC CGTGGTCCCG GTTCCGGACC CCGGACGGCC AGGGCGTGGA CGTCATCCTC
GGCCCGGAGA TGCGCTCGAC CGGTGAGGTC ATGGGCATCG ACGCGGACTT CGGCAAGGCC
TTCGCCAAGT CCCAGGCCGG CGCCTACGGC TCGCTGCCGC TGAAGGGCAA GGCGTTCGTC
TCGGTGGCCA ACCGGGACAA GCGCTCGATG GTCTTCCCGG TCAAGGCGCT GCACGACCTG
GGCTTCGAGA TCCTCGCCAC CGACGGCACC GCCGACGTGC TGCGCCGCAA CGGCATCCCG
GCCACCACGG TGCGCAAGCA CTCCCAGGGC ACCGGTCCGA ACGGCGAGCC GACGATCGTG
CAGATGATCA TCGACGGCGG CATCGACCTG ATCGTGAACA CGCCCTTCGG GGTGGGCTCG
CGGCTGGACG GCTACGAGAT CCGGACCGCG GCGGTGCAGG CCGGCAAGCC GTGCATCACC
ACGGTCCAGG GCTTCGCGGC CGCCGTGCAC GGGATCGAGG CGCTCCAGCG CGGCGAGATC
GGGATCGGCT CGCTGCAGGA GTACGCGGAC AAGATCAACG CCTCCCGCGC CGCGAGCTGA
|
|---|
| Protein sequence | MPKREDLKSV LVVGSGPIVI GQAAEFDYSG TQACRVLRSE GLRVILVNSN PATIMTDPEV
ADATYVEPIT PEFVEKIIAK ERPDALLPTL GGQTALNTAV ALAENGVLEK YNVELIGANI
AAIQSGEDRE KFKRIVETIG AESARSVICH SMEDCLAGVE ELGGYPVVVR PSFTMGGAGS
GFAHNEEELR RIAGTGLALS PTTEVLLEES ILGWKEYELE LMRDKNDNVV VVCSIENFDP
MGVHTGDSIT VAPSMTLTDR EYQELRDIGI AVIRAVGVDT GGCNIQFAVN PADGRIIVIE
MNPRVSRSSA LASKATGFPI AKIAARLAVG YTLDEIPNDI TQQTPASFEP ALDYVVVKVP
RFAFEKFPAA DSTLTTTMKS VGEAMAIGRS FPEALQKALR SLEKKGSEFT WVGPVRDKAT
VLTEAARPTD GRVNLLVEAY RAGASISELH EATKIDPWFL DQVLLIHETA CELRDAERLS
PELLHRVKRT GFSDKQIADI RNLGESVVRE LRHSLGVRPV YKTVDTCAAE FAARTPYHYS
SYDEETEVEP RAKPAVIILG SGPNRIGQGI EFDYSCVHAS FALRDAGYET IMVNCNPETV
STDYDTSDRL YFEPLTLEDV LEIVDAERAA GPLAGVIVQL GGQTPLGLAQ ALKDAGVPVV
GTSPEAIHLA EDRGAFGRVL AEAGLPAPKH GTAFSFAEAK AIADEIGYPV LVRPSYVLGG
RGMEIVYDET MLHGYIERAT QISPEHPVLV DRFLDDAIEI DVDALFDGEE LYLGGVMEHI
EEAGIHSGDS ACALPPITLG GHDIKRLRAS TEAIARGVGV RGLINIQYAL AGDILYVLEA
NPRASRTVPF VAKATAVPLA KAAARIGLGA TVAELRAEGL LPREGDGGTL PPDSPISVKE
AVMPWSRFRT PDGQGVDVIL GPEMRSTGEV MGIDADFGKA FAKSQAGAYG SLPLKGKAFV
SVANRDKRSM VFPVKALHDL GFEILATDGT ADVLRRNGIP ATTVRKHSQG TGPNGEPTIV
QMIIDGGIDL IVNTPFGVGS RLDGYEIRTA AVQAGKPCIT TVQGFAAAVH GIEALQRGEI
GIGSLQEYAD KINASRAAS
|
|---|
| |