More than 300 homologs were found in PanDaTox collection
for query gene Ppha_0649 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU1276  carbamoyl-phosphate synthase, large subunit  66.6 
 
 
1081 aa  665    Geobacter sulfurreducens PCA  Bacteria  normal  0.104945  n/a   
 
 
-
 
NC_009483  Gura_1864  carbamoyl-phosphate synthase, large subunit  65.58 
 
 
1082 aa  659    Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000611023  n/a   
 
 
-
 
NC_009675  Anae109_2072  carbamoyl phosphate synthase large subunit  63.37 
 
 
1083 aa  634    Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.471557 
 
 
-
 
NC_014148  Plim_0334  carbamoyl-phosphate synthase, large subunit  64.2 
 
 
1090 aa  649    Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1893  carbamoyl phosphate synthase large subunit  63.04 
 
 
1097 aa  642    Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.457655 
 
 
-
 
NC_007484  Noc_2572  carbamoyl-phosphate synthase, large subunit, glutamine-dependent  63.14 
 
 
1073 aa  637    Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0164695  n/a   
 
 
-
 
NC_007512  Plut_1651  carbamoyl-phosphate synthase, medium subunit  92.87 
 
 
492 aa  927    Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0173  carbamoyl-phosphate synthase, medium subunit  93.89 
 
 
492 aa  933    Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1774  carbamoyl-phosphate synthase large subunit  66.26 
 
 
1081 aa  665    Geobacter metallireducens GS-15  Bacteria  decreased coverage  0.00000157385  normal  0.0854041 
 
 
-
 
NC_011146  Gbem_1900  carbamoyl-phosphate synthase, large subunit  65.24 
 
 
1082 aa  657    Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00662116  n/a   
 
 
-
 
NC_007604  Synpcc7942_0711  carbamoyl phosphate synthase large subunit  63.86 
 
 
1097 aa  641    Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2728  carbamoyl phosphate synthase large subunit  64.3 
 
 
1077 aa  637    Saccharophagus degradans 2-40  Bacteria  normal  0.523784  normal 
 
 
-
 
NC_014248  Aazo_0571  carbamoyl-phosphate synthase large subunit  63.45 
 
 
1094 aa  645    'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0649  Carbamoyl-phosphate synthase L chain ATP-binding  100 
 
 
492 aa  998    Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0467  Carbamoyl-phosphate synthase L chain ATP-binding  93.06 
 
 
495 aa  927    Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0489  Carbamoyl-phosphate synthase L chain ATP-binding  91.82 
 
 
495 aa  914    Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0121  carbamoyl-phosphate synthase, large subunit  63.24 
 
 
1075 aa  643    Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2877  carbamoyl phosphate synthase large subunit  62.42 
 
 
1076 aa  635    Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.1435 
 
 
-
 
NC_011884  Cyan7425_1672  carbamoyl phosphate synthase large subunit  63.24 
 
 
1107 aa  639    Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_0534  Carbamoyl-phosphate synthase L chain ATP-binding  90.02 
 
 
495 aa  909    Chlorobium phaeobacteroides BS1  Bacteria  normal  0.701669  normal 
 
 
-
 
NC_008609  Ppro_2524  carbamoyl-phosphate synthase, large subunit  66.87 
 
 
1078 aa  671    Pelobacter propionicus DSM 2379  Bacteria  normal  0.0237548  n/a   
 
 
-
 
NC_008639  Cpha266_0530  carbamoyl-phosphate synthase large subunit  93.47 
 
 
492 aa  905    Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2308  carbamoyl-phosphate synthase, large subunit  65.92 
 
 
1082 aa  658    Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_2079  carbamoyl-phosphate synthase, large subunit  66.73 
 
 
1082 aa  668    Geobacter lovleyi SZ  Bacteria  normal  0.0359545  n/a   
 
 
-
 
NC_011891  A2cp1_2208  carbamoyl phosphate synthase large subunit  64.12 
 
 
1077 aa  632  1e-180  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2886  carbamoyl phosphate synthase large subunit  64.48 
 
 
1082 aa  634  1e-180  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.827795  n/a   
 
 
-
 
NC_007760  Adeh_1729  carbamoyl phosphate synthase large subunit  64.2 
 
 
1077 aa  634  1e-180  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2118  carbamoyl phosphate synthase large subunit  63.99 
 
 
1077 aa  632  1e-180  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0628  carbamoyl phosphate synthase large subunit  62.09 
 
 
1081 aa  628  1e-179  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011206  Lferr_0789  carbamoyl-phosphate synthase, large subunit  62.32 
 
 
1079 aa  630  1e-179  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0639  carbamoyl-phosphate synthase, large subunit  62.32 
 
 
1079 aa  630  1e-179  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3018  carbamoyl-phosphate synthase large subunit  64.07 
 
 
1074 aa  628  1e-179  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3358  carbamoyl-phosphate synthase, large subunit  63.21 
 
 
1072 aa  628  1e-179  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1562  carbamoyl-phosphate synthase, large subunit  62.63 
 
 
1077 aa  626  1e-178  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0645  carbamoyl phosphate synthase large subunit  62.09 
 
 
1081 aa  627  1e-178  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.796539 
 
 
-
 
NC_009484  Acry_0911  carbamoyl phosphate synthase large subunit  63.24 
 
 
1081 aa  627  1e-178  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00086  carbamoyl phosphate synthase large subunit  64.2 
 
 
1080 aa  625  1e-178  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_5230  carbamoyl phosphate synthase large subunit  62.09 
 
 
1082 aa  624  1e-178  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_2456  carbamoyl-phosphate synthase, large subunit  62.14 
 
 
1096 aa  625  1e-178  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010655  Amuc_1251  carbamoyl-phosphate synthase, large subunit  62.58 
 
 
1067 aa  626  1e-178  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_13230  carbamoyl-phosphate synthase large subunit  62.35 
 
 
1093 aa  625  1e-178  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.94923  normal  0.975818 
 
 
-
 
NC_009511  Swit_0438  carbamoyl phosphate synthase large subunit  63.51 
 
 
1110 aa  622  1e-177  Sphingomonas wittichii RW1  Bacteria  normal  0.561352  normal 
 
 
-
 
NC_010577  XfasM23_0393  carbamoyl phosphate synthase large subunit  63.47 
 
 
1080 aa  624  1e-177  Xylella fastidiosa M23  Bacteria  normal  0.803496  n/a   
 
 
-
 
NC_007404  Tbd_1128  carbamoyl-phosphate synthase large subunit  63.17 
 
 
1068 aa  623  1e-177  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0767  carbamoyl phosphate synthase large subunit  63.6 
 
 
1073 aa  622  1e-177  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.256868  normal  0.1584 
 
 
-
 
NC_011071  Smal_1812  carbamoyl phosphate synthase large subunit  64.51 
 
 
1080 aa  622  1e-177  Stenotrophomonas maltophilia R551-3  Bacteria  decreased coverage  0.00557421  normal  0.0258544 
 
 
-
 
NC_010513  Xfasm12_0452  carbamoyl phosphate synthase large subunit  63.47 
 
 
1080 aa  624  1e-177  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1018  carbamoyl phosphate synthase large subunit  61.62 
 
 
1087 aa  624  1e-177  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3012  carbamoyl-phosphate synthase, large subunit  62.8 
 
 
1107 aa  619  1e-176  Thermomonospora curvata DSM 43183  Bacteria  normal  0.541011  n/a   
 
 
-
 
NC_011138  MADE_02243  carbamoyl phosphate synthase large subunit  62.78 
 
 
1073 aa  619  1e-176  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2306  carbamoyl-phosphate synthase, large subunit  61.96 
 
 
1078 aa  618  1e-176  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009523  RoseRS_4057  carbamoyl-phosphate synthase, large subunit  62.89 
 
 
1113 aa  620  1e-176  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_42930  carbamoyl phosphate synthase large subunit  63.19 
 
 
1073 aa  618  1e-176  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1879  carbamoyl phosphate synthase large subunit  62.73 
 
 
1110 aa  618  1e-176  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.99136 
 
 
-
 
NC_004347  SO_1142  carbamoyl phosphate synthase large subunit  61.99 
 
 
1074 aa  614  1e-175  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_4501  carbamoyl-phosphate synthase, large subunit  63.27 
 
 
1073 aa  615  1e-175  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3577  carbamoyl phosphate synthase large subunit  62.3 
 
 
1072 aa  615  1e-175  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.108884 
 
 
-
 
NC_007005  Psyr_4191  carbamoyl phosphate synthase large subunit  63.06 
 
 
1073 aa  615  1e-175  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.725714  normal 
 
 
-
 
NC_009656  PSPA7_5476  carbamoyl phosphate synthase large subunit  63.39 
 
 
1073 aa  614  1e-175  Pseudomonas aeruginosa PA7  Bacteria  normal  0.783479  n/a   
 
 
-
 
NC_009439  Pmen_3620  carbamoyl phosphate synthase large subunit  64.01 
 
 
1073 aa  616  1e-175  Pseudomonas mendocina ymp  Bacteria  normal  0.830394  normal 
 
 
-
 
NC_013456  VEA_004478  carbamoyl-phosphate synthase large chain  62.83 
 
 
1077 aa  615  1e-175  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0849  carbamoyl phosphate synthase large subunit  60.81 
 
 
1087 aa  615  1e-175  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.173852 
 
 
-
 
NC_009720  Xaut_2750  carbamoyl-phosphate synthase, large subunit  62.85 
 
 
1120 aa  615  1e-175  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008783  BARBAKC583_0975  carbamoyl phosphate synthase large subunit  58.23 
 
 
1161 aa  615  1e-175  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2838  carbamoyl phosphate synthase large subunit  61.79 
 
 
1073 aa  615  1e-175  Shewanella loihica PV-4  Bacteria  normal  0.144627  normal  0.047859 
 
 
-
 
NC_009505  BOV_1443  carbamoyl phosphate synthase large subunit  58.6 
 
 
1162 aa  615  1e-175  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2806  carbamoyl-phosphate synthase, large subunit  61.91 
 
 
1077 aa  614  1e-175  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3400  carbamoyl phosphate synthase large subunit  62.53 
 
 
1074 aa  616  1e-175  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3566  carbamoyl-phosphate synthase, large subunit  63.39 
 
 
1073 aa  612  9.999999999999999e-175  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4723  carbamoyl phosphate synthase large subunit  61.84 
 
 
1073 aa  612  9.999999999999999e-175  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00575089 
 
 
-
 
NC_002977  MCA1852  carbamoyl-phosphate synthase, large subunit  63.11 
 
 
1072 aa  613  9.999999999999999e-175  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00913  carbamoyl phosphate synthase large subunit  62.42 
 
 
1077 aa  611  9.999999999999999e-175  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013204  Elen_1670  carbamoyl-phosphate synthase, large subunit  61.15 
 
 
1078 aa  611  9.999999999999999e-175  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.00809225 
 
 
-
 
NC_004310  BR1488  carbamoyl phosphate synthase large subunit  58.41 
 
 
1162 aa  612  9.999999999999999e-175  Brucella suis 1330  Bacteria  normal  0.284371  n/a   
 
 
-
 
NC_010498  EcSMS35_0033  carbamoyl phosphate synthase large subunit  63.39 
 
 
1073 aa  612  9.999999999999999e-175  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1057  carbamoyl-phosphate synthase large subunit  62.12 
 
 
1103 aa  614  9.999999999999999e-175  Thermobifida fusca YX  Bacteria  normal  0.614826  n/a   
 
 
-
 
NC_011149  SeAg_B0074  carbamoyl phosphate synthase large subunit  63.39 
 
 
1075 aa  613  9.999999999999999e-175  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1679  carbamoyl phosphate synthase large subunit  58.41 
 
 
1161 aa  614  9.999999999999999e-175  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3304  carbamoyl phosphate synthase large subunit  62.53 
 
 
1074 aa  614  9.999999999999999e-175  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0071  carbamoyl phosphate synthase large subunit  63.19 
 
 
1075 aa  611  9.999999999999999e-175  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.423134  normal 
 
 
-
 
NC_011083  SeHA_C0071  carbamoyl phosphate synthase large subunit  63.39 
 
 
1075 aa  613  9.999999999999999e-175  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4724  carbamoyl phosphate synthase large subunit  61.84 
 
 
1073 aa  612  9.999999999999999e-175  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_0833  carbamoyl-phosphate synthase, large subunit  61.63 
 
 
1086 aa  613  9.999999999999999e-175  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.00324716  normal 
 
 
-
 
NC_011365  Gdia_3031  carbamoyl phosphate synthase large subunit  61.1 
 
 
1084 aa  612  9.999999999999999e-175  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.144026  decreased coverage  0.0049366 
 
 
-
 
NC_010468  EcolC_3622  carbamoyl phosphate synthase large subunit  63.39 
 
 
1073 aa  612  9.999999999999999e-175  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.443028 
 
 
-
 
NC_011094  SeSA_A0075  carbamoyl phosphate synthase large subunit  63.39 
 
 
1075 aa  613  9.999999999999999e-175  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1052  carbamoyl phosphate synthase large subunit  62.53 
 
 
1074 aa  614  9.999999999999999e-175  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000022294 
 
 
-
 
NC_009901  Spea_3074  carbamoyl phosphate synthase large subunit  61.79 
 
 
1073 aa  613  9.999999999999999e-175  Shewanella pealeana ATCC 700345  Bacteria  normal  0.581012  n/a   
 
 
-
 
NC_008048  Sala_0985  carbamoyl phosphate synthase large subunit  62.89 
 
 
1106 aa  614  9.999999999999999e-175  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.557617  normal 
 
 
-
 
NC_009438  Sputcn32_2939  carbamoyl phosphate synthase large subunit  62.53 
 
 
1074 aa  613  9.999999999999999e-175  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0679  carbamoyl-phosphate synthase, large subunit  62.35 
 
 
1095 aa  614  9.999999999999999e-175  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2095  carbamoyl phosphate synthase large subunit  58.96 
 
 
1162 aa  612  9.999999999999999e-175  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_62910  carbamoyl phosphate synthase large subunit  63.39 
 
 
1073 aa  614  9.999999999999999e-175  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3525  carbamoyl phosphate synthase large subunit  62.53 
 
 
1074 aa  614  9.999999999999999e-175  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0073  carbamoyl phosphate synthase large subunit  63.39 
 
 
1075 aa  612  9.999999999999999e-175  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.841404  normal 
 
 
-
 
NC_008789  Hhal_1775  carbamoyl-phosphate synthase, large subunit  62.11 
 
 
1073 aa  612  9.999999999999999e-175  Halorhodospira halophila SL1  Bacteria  normal  0.0103005  n/a   
 
 
-
 
NC_009831  Ssed_3403  carbamoyl phosphate synthase large subunit  61.89 
 
 
1072 aa  612  9.999999999999999e-175  Shewanella sediminis HAW-EB3  Bacteria  normal  decreased coverage  0.000056188 
 
 
-
 
CP001509  ECD_00037  carbamoyl-phosphate synthase large subunit  63.19 
 
 
1073 aa  610  1e-173  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0034  carbamoyl phosphate synthase large subunit  63.19 
 
 
1073 aa  610  1e-173  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3582  carbamoyl phosphate synthase large subunit  62.45 
 
 
1077 aa  608  1e-173  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
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