Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02243 |
Symbol | carB |
ID | 6775679 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 2402241 |
End bp | 2405462 |
Gene Length | 3222 bp |
Protein Length | 1073 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642755677 |
Product | carbamoyl phosphate synthase large subunit |
Protein accession | YP_002126533 |
Protein GI | 196157044 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism |
COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAAAC GTACCGACAT AAAAAGTATT CTTATCATTG GTGCTGGCCC TATTGTAATC GGCCAGGCTT GTGAATTCGA CTATTCAGGC GCGCAAGCGT GTAAAGCCCT TCGCGAAGAA GGCTACCGTG TTATTTTGGT TAACTCTAAC CCAGCAACCA TCATGACCGA CCCAGAAATG GCAGATGCGA CTTACATCGA GCCTATTCAC TGGGAAGTAG TACGCAAAAT TATCGAAAAA GAACGTCCAG ACGCCATTCT TCCTACTATG GGTGGGCAAA CAGCCCTTAA CTGTGCGCTA GAGCTTGATA AGCACGGTGT ACTAGAAGAA TTTGGCTGTG AGCTTATTGG CGCAACGGCT GACGCTATCG ATAAGGCGGA AAACCGTGAA CGCTTTGACC AAGCGATGAA AAACATTGGC CTTGAGTGTC CACGTGCGGA AATCGCCCAC AGCATGGACG AAGCGCACGA TGTGCTAAGT CGCATCGGCT TCCCATGTAT CATTCGTCCT TCATTCACCA TGGGCGGAAC CGGCGGTGGT ATTGCCTACA ACATTGATGA GTTCAATGAA ATTTGTACCC GCGGCCTCGA CCTTTCCCCC ACCAACGAAC TTCTTATTGA TGAGTCGTTA CTTGGCTGGA AAGAATACGA GATGGAAGTA GTACGCGATA AGGCAGATAA CTGCATTATT GTTTGTACAA TTGAAAACTT CGATCCAATG GGGGTTCATA CGGGCGACTC TATCACTGTT GCCCCAGCGC AAACCCTTAC CGACAAAGAA TTCCAGATTA TGCGTAATGC AGCGATGGCT GTACTACGTG AAATTGGTGT TGAAACCGGT GGTTCAAACG TACAGTTTGG CGTAGACCCT AAAACCGGTC GTATGGTTAT CATCGAAATG AACCCGCGTG TATCGCGTTC ATCGGCGCTA GCCTCTAAAG CAACGGGCTT CCCGATTGCG AAAGTGGCTG CGAAGTTAGC AGTAGGTTAC ACCCTAGATG AGCTAGCTAA CGACATCACT GGCGGTTTAA CGCCGGCGTC GTTTGAACCG TCAATCGATT ACGTTGTCAC TAAGATCCCT CGCTTCAACT TTGAAAAGTT TGCCGGTGCT AACGACCGTC TCACCACACA GATGAAGTCA GTGGGCGAGG TGATGGCGAT TGGTCGTAAC CAACAAGAGT CGTTACAAAA AGCCCTTCGT GGTCTTGAAG TTGGTGCGTC AGGTTTGAAC CCAATGGTTG ACCTTGAAGA CCCTGAGTCG CGCAATAAAG TCGTTTACGA ACTTCGCCAG CCGGGTGCAG AGCGTATTTG GTACATTGGC GATGCATTCC GTATGGGCAT GAGCGTTGAA GAAGTGTTCA ACCTTACCAA TATTGACCGC TGGTATTTAG TGCAGCTAGA AGATCTTATT CTTCTTGAAG CGAAAGTGGC AGAACTTGGT TTGCCGGGTA TTGATGCTGA CTTTATGCGC GCGCTAAAGC GCAAAGGTTT CTCAGATGCA CGTCTTGCTG AGCTGACCAA AGTGGCAGAA AGCGATATTC GTGAAGCTCG TCGCGGTTTT GGCATTTCTC CAGTGTACAA GCGCGTAGAT ACGTGTGCCG CAGAGTTCTC TACCAGCACG GCTTATATGT ATTCGACCTA TGACGAAGAG TGTGAAGCTG CGCCAACCGA TAAAGAGAAA ATCATGGTAT TGGGCGGTGG CCCTAACCGT ATCGGTCAAG GCATTGAATT CGATTATTGC TGCGTTCACG CGGCGCTTTC AATGCGTGAA GACGGTTACG AGACCATTAT GGTTAACTGT AACCCTGAAA CGGTGTCTAC TGACTACGAC ACGTCAGATC GCTTGTATTT CGAACCAGTA ACGCTGGAAG ATGTACTTGA AATCGTTGCT AAAGAGCAGC CAAAAGGCGT TATCGTACAG TACGGTGGTC AAACGCCTCT TAAACTTGCT CGTGCCCTAG AAGCAGCAGG CGTACCGGTT ATCGGTACCT CACCTGAAGC GATTGACCGT GCTGAAGACC GTGAGCGTTT CCAGCAAATG GTGAACAAGC TTAATCTTAA GCAGCCTGCG AATGCGACAG TAACTAACGT CGAGCAAGCG CTAACTATGG CTGAAGAGAT TGGCTTCCCG CTGGTTGTTC GTCCAAGCTA CGTGTTAGGT GGACGTGCGA TGGAAATCGT TTACGACATT AAAGACCTTA AGCGTTATCT AAACGAAGCG GTTAAAGTGT CTAACGACGC GCCCGTATTG CTAGACCGTT TCCTAGATGA CGCTATCGAA GTGGATATCG ATGCTATATG CGACGGTAAA GAGGTTGTGA TTGGCGGTAT CATGGAACAC ATCGAACAAG CGGGTGTTCA CTCTGGTGAC TCTGCATGTT CACTGCCTCC GCATTCACTC CCCAAAGACA TCCAGGACGT GATGCGCGAG CAGGTAAAAG CCATGGCGCT AGAGCTTGGC GTAGTGGGGC TAATGAATAC CCAGTTTGCG ATAAAAGACG GCGAAGTTTA CCTAATCGAG GTTAACCCGC GTGCAGCGCG TACGGTACCT TTCGTATCAA AAGCCACGGG CATTCCTCTT GCTAAAGTTG CGGCACGTGC AATGGCGGGC GTAAGCTTGG CAGAGCAGGG CGTAACTGAA GAAGTGATCC CACCTTTCTA CTCGGTGAAA GAAGTGGTAC TTCCGTTTGC TAAGTTCCAA GGTGTTGACC CACTGTTAGG CCCAGAAATG CGCTCAACTG GTGAAGTTAT GGGTGTTGGC GATACGTTTG AAGAAGCGTA CGCTAAAGCG AACCTTGGCG CAGGCGCGCC ACTGCCGAAA GAAGGTAAAG CACTTATCTC TGTGCGTGAA ACTGACAAGC CGAAAATTAT CGAGCTAGCT AAGGCCCTTG TTGCGGCTGG GTTCAGTATT GAAGCCACGC GCGGTACAGC AACGACCTTG TACGATGCAG GTATAATGAG CACGGTGGTG AATAAGCTAT CTGAAGGCCG ACCTAACATT GTTGATGCTA TCAAAAACGG TGAATACGCT TATTTGATAA ATACAACAGA AGGTCGCCAA GCGATTACCG ATTCAGTTTA CATACGTCGT GAAGCCTTGG TGAACAAGGT TACCTATACC ACCACGATGA ATGCAGCGTT TGCAACTATT CGCGCTAAGT CTGCTGATGA CCGCAATAAA GTGGCTTCAG TTCAAGAACT GCACGCTAGG CTTAAACACT GA
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Protein sequence | MPKRTDIKSI LIIGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM ADATYIEPIH WEVVRKIIEK ERPDAILPTM GGQTALNCAL ELDKHGVLEE FGCELIGATA DAIDKAENRE RFDQAMKNIG LECPRAEIAH SMDEAHDVLS RIGFPCIIRP SFTMGGTGGG IAYNIDEFNE ICTRGLDLSP TNELLIDESL LGWKEYEMEV VRDKADNCII VCTIENFDPM GVHTGDSITV APAQTLTDKE FQIMRNAAMA VLREIGVETG GSNVQFGVDP KTGRMVIIEM NPRVSRSSAL ASKATGFPIA KVAAKLAVGY TLDELANDIT GGLTPASFEP SIDYVVTKIP RFNFEKFAGA NDRLTTQMKS VGEVMAIGRN QQESLQKALR GLEVGASGLN PMVDLEDPES RNKVVYELRQ PGAERIWYIG DAFRMGMSVE EVFNLTNIDR WYLVQLEDLI LLEAKVAELG LPGIDADFMR ALKRKGFSDA RLAELTKVAE SDIREARRGF GISPVYKRVD TCAAEFSTST AYMYSTYDEE CEAAPTDKEK IMVLGGGPNR IGQGIEFDYC CVHAALSMRE DGYETIMVNC NPETVSTDYD TSDRLYFEPV TLEDVLEIVA KEQPKGVIVQ YGGQTPLKLA RALEAAGVPV IGTSPEAIDR AEDRERFQQM VNKLNLKQPA NATVTNVEQA LTMAEEIGFP LVVRPSYVLG GRAMEIVYDI KDLKRYLNEA VKVSNDAPVL LDRFLDDAIE VDIDAICDGK EVVIGGIMEH IEQAGVHSGD SACSLPPHSL PKDIQDVMRE QVKAMALELG VVGLMNTQFA IKDGEVYLIE VNPRAARTVP FVSKATGIPL AKVAARAMAG VSLAEQGVTE EVIPPFYSVK EVVLPFAKFQ GVDPLLGPEM RSTGEVMGVG DTFEEAYAKA NLGAGAPLPK EGKALISVRE TDKPKIIELA KALVAAGFSI EATRGTATTL YDAGIMSTVV NKLSEGRPNI VDAIKNGEYA YLINTTEGRQ AITDSVYIRR EALVNKVTYT TTMNAAFATI RAKSADDRNK VASVQELHAR LKH
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