Gene Avin_42930 details

Gene Information

• Locus tag: Avin_42930
• Symbol: carB
• ID: 7763167
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 4330755
• End bp: 4333976
• Gene Length: 3222 bp
• Protein Length: 1073 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643807149
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_002801390
• Protein GI: 226946317
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit; [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAAC GTACAGACAT CAAAAGCATC CTGATCCTCG GCGCCGGCCC CATCGTCATC 
GGTCAGGCCT GCGAGTTCGA CTACTCGGGC GCCCAGGCTT GCAAGGCACT GAAAGAAGAA 
GGCTTTCGCG TCATTTTGGT GAACTCCAAC CCGGCCACCA TCATGACTGA CCCGACCATG 
GCCGACGCCA CCTACATCGA GCCGATCAAG TGGCAGACCG TGGCCAAGAT CATCGAGAAG 
GAACGACCCG ACGCCCTGCT GCCGACCATG GGCGGCCAGA CCGCGCTGAA CTGCGCCCTG 
GCGCTGGAGA AACACGGCGT GTTGACCAAG TTCGGCGTCG AGATGATCGG TGCCAATGCC 
GATACCATCG ACAAGGCCGA GGACCGCTCG CGCTTCGACA AGGCCATGCG CGCCATCGGC 
CTGGAATGCC CGCGCTCCGG CATCGCCCAC AGCATGGACG AAGCCTATGG CGTATTGGAC 
AAGGTCGGCT TCCCCTGCAT CATCCGTCCG TCCTTCACCA TGGGTGGCAC CGGTGGCGGT 
ATCGCCTACA ACCGCGAAGA GTTCGAGGAA ATCTGTACCC GCGGCCTGGA CCTGTCGCCG 
ACCAGCGAGC TTTTGATCGA CGAATCCCTG ATCGGCTGGA AGGAGTACGA GATGGAGGTG 
GTCCGCGACA AGAAGGACAA CTGCATCATC GTCTGCTCGA TCGAGAACTT CGATCCGATG 
GGCGTGCATA CCGGTGACTC GATCACCGTG GCTCCGGCGC AGACCCTGAC CGACAAGGAA 
TACCAGATCA TGCGCAACGC ATCGCTTGCG GTGCTGCGCG AGATCGGCGT GGAGACCGGC 
GGCTCCAATG TGCAGTTCGG CATCAATCCG GTCGACGGCC GCATGGTGGT GATCGAGATG 
AACCCGCGCG TGTCGCGCTC CTCGGCGCTG GCCTCGAAGG CTACCGGCTT CCCGATCGCC 
AAGATCGCCG CCAAGCTGGC GGTGGGCTAT ACCCTCGACG AGTTGTCCAA CGACATCACC 
GGCGGCCGCA CGCCGGCCTC CTTCGAGCCG GCCATCGACT ACGTGGTTAC CAAGGTGCCA 
CGCTTCGCCT TCGAGAAGTT TCCCAAGGCC GACGCTCGCC TGACCACCCA GATGAAATCC 
GTGGGCGAGG TGATGGCCAT CGGTCGGACC TTCCAGGAGT CCGTACAGAA GGCCCTGCGT 
GGCCTGGAGG TTGGGGTCAG TGGTTTCGAT CCCAAACTGG ATCCGGGCAA CCCGGAAGCC 
GGGAGCATTC TCAAGCGCGA GCTGACCGTG CCGGGCGCCG AGCGCATTTG GTATGTGGCC 
GATGCCTTCC GTGCCGGCAA GAGCGTCGAC GATGTGTTCG CGATGACCAG GATCGACCCC 
TGGTTCCTGG TGCAGATCGA GGATCTGGTC AAGGAAGAGG AGCGGGTCAA GACTCTCGGC 
CTTTCCAGCA TCGATCGCAA CCTGATGTGG CGGCTCAAGC GCAAGGGCTT TTCCGACGCA 
CGCCTGGCCA AGCTGCTCGG CGTGACCGAG AAGAACCTGC GCAGCCACCG GCAGAAGCTC 
AAGGTGCAGC CGGTGTACAA GCGTGTCGAT ACCTGCGCCG CCGAGTTCGC CAGCGATACC 
GCCTACATGT ACTCGACTTA CGAGGAGGAG TGCGAGGCCA AGCCGTCCAG CCGCGACAAG 
ATCATGGTCA TCGGCGGCGG TCCGAACCGT ATCGGCCAGG GCATCGAGTT CGACTATTGC 
TGCGTGCATG CTGCACTGGC CATGCGCGAA GACGGTTACG AGACCATCAT GGTCAACTGC 
AACCCAGAAA CCGTCTCCAC CGACTACGAC ACGTCCGATC GCCTGTATTT CGAGCCGGTG 
ACCCTGGAGG ACGTGTTGGA AATCGTCCGT GTCGAACAGC CCAAGGGCGT CATCGTGCAG 
TACGGCGGTC AGACCCCGCT GAAGATCTGC CGCGCGCTGG AGGAAGCCGG TGTGCCGATC 
ATCGGCACCA GCCCGGACGC CATCGACCGC GCCGAGGACC GCGAGCGCTT CCAGCACATG 
GTCGAGCGCC TCAACCTGCG CCAGCCGCCG AACGCCACTG CCCGCAGCGA GGACGAGGCC 
ATCGCCGCCT CGAAGGCGAT CGGCTATCCG CTGGTGGTGC GCCCGTCTTA TGTGCTGGGT 
GGCCGGGCCA TGGAGATCGT CTATGAGGAA GACGAACTCA AGCGCTACAT GCGCGAGGCC 
GTGCAGGTCT CCAACGACAG CCCGGTACTG CTCGACCACT TCCTCAATTG CGCCATCGAG 
GTCGATATCG ATGCCGTCTG TGACGGCGAG GACGTAGTGA TCGGTGCGAT CATGCAGCAC 
ATCGAGCAGG CCGGCGTGCA TTCCGGCGAT TCTGCCTGTT CGCTGCCGCC CTATTCGCTG 
CCGGCGCACA TCCAGGACGA TATCCGCGAA CAGGTCAAGA AGATGGCCCT GGAGCTCGGC 
GTCGTCGGTC TGATGAACGT CCAGATGGCG GTGCAGGGCG AAGACATCTA CGTCCTGGAG 
GTGAACCCGC GCGCCTCGCG CACCGTGCCT TTCGTCTCCA AGTGCATCGG TCAGTCCTTG 
GCCAAGATCG CCGCGCGCGT GATGGCCGGC AAGACGCTCA AGGAGATCGG TTTCACCCGC 
GAGATCATCC CGACGTACTT CAGCGTGAAG GAAGCGGTGT TCCCGTTTGC CAAATTCCCC 
GGCGTCGACC CCATTCTCGG CCCGGAGATG AAGTCCACCG GCGAGGTGAT GGGGGTCGGC 
GACAGTTTCG CCGAGGCTTT TGCCAAGGCC CAACTGGGGG CCAGCGAGAC CCTGCCAGCC 
GGTGGTTGCG CCTTCATCAG CGTGCGAGAA GACGACAAGC CGTTCGTCGC CGAGGTGGCG 
CGCAACCTGG TCGCCCTCGG CTTCGAGGTG GTGGCCACTG CCGGTACCGC TCGAATAATC 
GAAGCGGCCG GCCTGCCGGT TCGCCGGGTG AACAAGGTGA CCGAGGGGCG TCCCCATGTG 
GTCGACATGA TCAAGAACGA TGAGGTCACC CTGATCATCA ACACTACCGA GGGGCGCCAG 
TCGATCGCCG ACTCCTTCTC GATCCGTCGC AACGCTCTGC AGCACAAGAT CTGCATCACC 
ACCACCATCG CCGGTGGCCA GGCGATCTGT GAGGCGCTCA GGTTCGGTCC CGAGAAGACC 
GTGCGCCGTC TGCAGGATCT CCATGCAGGA ATCAACGCAT GA 

 

Protein sequence

MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALKEE GFRVILVNSN PATIMTDPTM 
ADATYIEPIK WQTVAKIIEK ERPDALLPTM GGQTALNCAL ALEKHGVLTK FGVEMIGANA 
DTIDKAEDRS RFDKAMRAIG LECPRSGIAH SMDEAYGVLD KVGFPCIIRP SFTMGGTGGG 
IAYNREEFEE ICTRGLDLSP TSELLIDESL IGWKEYEMEV VRDKKDNCII VCSIENFDPM 
GVHTGDSITV APAQTLTDKE YQIMRNASLA VLREIGVETG GSNVQFGINP VDGRMVVIEM 
NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDELSNDIT GGRTPASFEP AIDYVVTKVP 
RFAFEKFPKA DARLTTQMKS VGEVMAIGRT FQESVQKALR GLEVGVSGFD PKLDPGNPEA 
GSILKRELTV PGAERIWYVA DAFRAGKSVD DVFAMTRIDP WFLVQIEDLV KEEERVKTLG 
LSSIDRNLMW RLKRKGFSDA RLAKLLGVTE KNLRSHRQKL KVQPVYKRVD TCAAEFASDT 
AYMYSTYEEE CEAKPSSRDK IMVIGGGPNR IGQGIEFDYC CVHAALAMRE DGYETIMVNC 
NPETVSTDYD TSDRLYFEPV TLEDVLEIVR VEQPKGVIVQ YGGQTPLKIC RALEEAGVPI 
IGTSPDAIDR AEDRERFQHM VERLNLRQPP NATARSEDEA IAASKAIGYP LVVRPSYVLG 
GRAMEIVYEE DELKRYMREA VQVSNDSPVL LDHFLNCAIE VDIDAVCDGE DVVIGAIMQH 
IEQAGVHSGD SACSLPPYSL PAHIQDDIRE QVKKMALELG VVGLMNVQMA VQGEDIYVLE 
VNPRASRTVP FVSKCIGQSL AKIAARVMAG KTLKEIGFTR EIIPTYFSVK EAVFPFAKFP 
GVDPILGPEM KSTGEVMGVG DSFAEAFAKA QLGASETLPA GGCAFISVRE DDKPFVAEVA 
RNLVALGFEV VATAGTARII EAAGLPVRRV NKVTEGRPHV VDMIKNDEVT LIINTTEGRQ 
SIADSFSIRR NALQHKICIT TTIAGGQAIC EALRFGPEKT VRRLQDLHAG INA