| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3620 |
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| Symbol | carB |
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| ID | 5106167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3992440 |
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| End bp | 3995661 |
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| Gene Length | 3222 bp |
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| Protein Length | 1073 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640504875 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_001189100 |
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| Protein GI | 146308635 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.830394 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACAGATAT CAAAAGCATC CTGATCCTCG GCGCCGGCCC CATCGTCATC
GGCCAGGCCT GCGAGTTCGA CTACTCCGGC GCCCAGGCGT GCAAGGCGCT GAAGGAAGAA
GGTTTCCGCG TCATCCTGGT GAACTCCAAC CCGGCCACCA TCATGACCGA CCCGGCCATG
GCCGACGCCA CCTACATCGA GCCGATCAAG TGGGCCACCG TGGCCAAGAT CATCGAGAAG
GAGCGTCCGG ACGCGCTGCT GCCGACCATG GGCGGCCAGA CCGCGCTGAA CTGCGCCCTG
GACCTGGAGC GCCACGGCGT GCTGGAAAAG TTCGGCGTCG AGATGATCGG TGCCAACGCC
GACACCATCG ACAAGGCCGA AGACCGCTCG CGCTTCGACA AGGCCATGAA GGACATCGGC
CTGGCCTGCC CGCGTTCGGG TATCGCCCAC AGCATGGAAG AAGCCTACGG CGTGCTGGAG
ATGGTGGGCT TCCCCTGCAT CATCCGCCCC AGCTTCACCA TGGGCGGCAC CGGCGGCGGC
ATCGCCTACA ACCGTGAAGA ATTCGAGGAA ATCTGCGCCC GCGGTCTGGA CCTGTCGCCG
ACCAACGAGC TGCTGATCGA CGAATCGCTG ATCGGCTGGA AGGAATACGA GATGGAGGTG
GTCCGCGACA AGAAGGACAA CTGCATCATC GTCTGCTCCA TCGAGAACTT CGACCCGATG
GGCGTGCACA CCGGCGACTC CATCACCGTC GCCCCGGCGC AGACCCTGAC CGACAAGGAA
TACCAGATCA TGCGCAACGC CTCGCTGGCG GTGCTGCGTG AGATCGGCGT GGAAACCGGC
GGCTCCAACG TGCAGTTCGG CATCTGCCCG AACACCGGGC GCATGGTGGT GATCGAGATG
AACCCGCGCG TGTCGCGTTC CTCGGCGCTG GCCTCCAAGG CCACCGGCTT CCCCATCGCC
AAGATCGCCG CCAAGCTGGC CGTCGGTTAC ACCCTCGACG AGCTGTCCAA CGACATCACC
GGCGGCCGCA CTCCGGCCTC GTTCGAGCCG GCCATCGACT ACGTGGTGAC CAAGGTTCCG
CGCTTCGCCT TCGAGAAATT CCCCAAGGCC GACGCTCGCC TGACCACCCA GATGAAGTCC
GTCGGTGAAG TCATGGCCAT CGGCCGTACC TTCCAGGAGT CGGTGCAGAA AGCCCTGCGC
GGCCTGGAAG TCGGCGTTGC CGGCTTCGAT CCGAAGCTCG ACCTGAACGA TCCGGAAGCC
GAAAGCACCC TGCGCCGCGA GCTGACCGTA CCCAGTGCCG ACCGCATCTG GTACGTAGCC
GATGCCTTCC GTGCCGGCAA GACCGTCGCC GAAGTGTTCG AGCTGACCCG CATCGACGAG
TGGTTCCTGG TGCAGATCGA GGATCTGGTC AAGGACGAGG AGAAGGTCAA GACCCTCGGC
CTGTCCGCCA TCGATTACGA CCTGATGTTC AAGCTCAAGC GCAAGGGCTT CTCCGATGCG
CGTCTGGCCA AGCTGCTGGG CGTTTCCGAG AAGAGCCTGC GCGCGCACCG CCACAAGCTG
AAAGTACTGC CGGTGTACAA GCGCGTGGAC ACCTGCGCCG CCGAATTCGC CACCGACACC
GCCTACATGT ACTCGACCTA CGAGGAAGAG TGCGAGGCCA ACCCGTCGAG CCGCGACAAG
ATCATGATCC TCGGCGGCGG CCCCAACCGT ATCGGCCAGG GTATCGAGTT CGACTACTGC
TGCGTACACG CCGCGCTGGC CATGCGTGAA GACGGTTACG AGACCATCAT GGTCAACTGC
AACCCGGAAA CCGTCTCCAC CGACTACGAC ACCTCCGACC GCCTGTACTT CGAGCCGGTG
ACCCTGGAAG ACGTGCTGGA AATCGTCCGC GTCGAGCAGC CGAAAGGCGT GATCGTGCAG
TATGGCGGCC AGACCCCGCT GAAGATCTGC CGTGCGCTGG AAGAAGCTGG CGTGCCGATC
ATCGGCACCA GCCCCGAGGC CATCGACCGC GCCGAAGACC GCGAGCGCTT CCAGCAGATG
GTGCAGCGCC TGAACCTGCG TCAGCCGGCC AACGCCACTG CACGCAGCGA AGACGAAGCC
CTGGCGCTGT CCAAGGGCAT CGGTTACCCG ATGGTGGTGC GTCCGTCCTA CGTGCTGGGC
GGTCGGGCGA TGGAAATCGT CTACCAGGAA GAAGAGCTCA AGCGCTACAT GCGCGAAGCG
GTGAAGGTGT CCAACGACAG CCCGGTACTG CTGGATCGCT TCCTCAACTG CGCCATCGAA
GTGGACGTGG ACGCGGTCAG CGACGGCGAG ACCGTGGTGA TCGGTGCGAT CATGCAGCAT
ATCGAACAGG CCGGCGTGCA CTCCGGTGAC TCCGCCTGCT CGCTGCCGCC GTACTCGCTG
CCGGCGCATA TCCAGGACGA GATTCGCGAG CAGGTCAAGA AGATGGCTCT GGAGCTCGGC
GTGGTCGGCC TGATGAACGT GCAGATGGCC GTGCAGGGCG AGGACATCTA CGTCATCGAA
GTGAACCCGC GCGCCTCGCG TACCGTGCCG TTCGTTTCCA AGTGCGTCGG CGAGTCGCTG
GCCAAGGTGG CGGCGCGCGT CATGGCCGGC AAGACCCTGG CCGAAGTCGG CTACACCCAG
GAAATCATCC CGCCGTTCTT CAGCGTCAAG GAAGCGGTGT TCCCCTTCGC CAAGTTCCCG
GGCGTCGACC CGATCCTCGG CCCGGAGATG AAGTCCACCG GTGAAGTCAT GGGCGTCGGC
GACAGCTTCG GCGAAGCCTT CGCCAAGGCC CAGCTGGGTG CCAGCGAGAT CCTGCCGAAC
TCCGGTTGCG CCTTCATCAG CGTGCGTGAG GACGACAAGG CCGAGGCCGT TCAGGTCGCG
CGTGATCTGG TCAGCCTGGG CTTCGAGGTC GTCGCCACTG CCGGTACCGC CAAGGTGATC
GAGGCTGCCG GTCTGCCGGT ACGCCGCGTG AACAAGGTGA CCGAAGGTCG TCCGCACGTG
GTCGACATGA TCAAGAACGA CGAAGTCACC CTGATCATCA ATACCACCGA GGGGCGTCAA
TCCATCGCTG ACTCCTACTC GATCCGTCGT AACGCTCTGC AGCACAAGAT CTACTGCACC
ACCACCATCG CGGCGGGTCA GGCGGTCTGT GAGGCGCTCA AGTTCGGTCC CGAGAAGACC
GTGCGCCGGC TGCAGGATCT GCATGCAGGA ATCAAGGCAT GA
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| Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALKEE GFRVILVNSN PATIMTDPAM
ADATYIEPIK WATVAKIIEK ERPDALLPTM GGQTALNCAL DLERHGVLEK FGVEMIGANA
DTIDKAEDRS RFDKAMKDIG LACPRSGIAH SMEEAYGVLE MVGFPCIIRP SFTMGGTGGG
IAYNREEFEE ICARGLDLSP TNELLIDESL IGWKEYEMEV VRDKKDNCII VCSIENFDPM
GVHTGDSITV APAQTLTDKE YQIMRNASLA VLREIGVETG GSNVQFGICP NTGRMVVIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDELSNDIT GGRTPASFEP AIDYVVTKVP
RFAFEKFPKA DARLTTQMKS VGEVMAIGRT FQESVQKALR GLEVGVAGFD PKLDLNDPEA
ESTLRRELTV PSADRIWYVA DAFRAGKTVA EVFELTRIDE WFLVQIEDLV KDEEKVKTLG
LSAIDYDLMF KLKRKGFSDA RLAKLLGVSE KSLRAHRHKL KVLPVYKRVD TCAAEFATDT
AYMYSTYEEE CEANPSSRDK IMILGGGPNR IGQGIEFDYC CVHAALAMRE DGYETIMVNC
NPETVSTDYD TSDRLYFEPV TLEDVLEIVR VEQPKGVIVQ YGGQTPLKIC RALEEAGVPI
IGTSPEAIDR AEDRERFQQM VQRLNLRQPA NATARSEDEA LALSKGIGYP MVVRPSYVLG
GRAMEIVYQE EELKRYMREA VKVSNDSPVL LDRFLNCAIE VDVDAVSDGE TVVIGAIMQH
IEQAGVHSGD SACSLPPYSL PAHIQDEIRE QVKKMALELG VVGLMNVQMA VQGEDIYVIE
VNPRASRTVP FVSKCVGESL AKVAARVMAG KTLAEVGYTQ EIIPPFFSVK EAVFPFAKFP
GVDPILGPEM KSTGEVMGVG DSFGEAFAKA QLGASEILPN SGCAFISVRE DDKAEAVQVA
RDLVSLGFEV VATAGTAKVI EAAGLPVRRV NKVTEGRPHV VDMIKNDEVT LIINTTEGRQ
SIADSYSIRR NALQHKIYCT TTIAAGQAVC EALKFGPEKT VRRLQDLHAG IKA
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