| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0438 |
|---|
| Symbol | carB |
|---|
| ID | 5197625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 463364 |
|---|
| End bp | 466696 |
|---|
| Gene Length | 3333 bp |
|---|
| Protein Length | 1110 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640579977 |
|---|
| Product | carbamoyl phosphate synthase large subunit |
|---|
| Protein accession | YP_001260944 |
|---|
| Protein GI | 148553362 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.561352 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAGC GCACTGATAT CTCCTCCATC CTCATTATCG GCGCGGGTCC GATCGTCATC
GGTCAGGCCT GCGAGTTCGA CTATTCGGGA ACGCAGGCCT GCAAGGCGCT GCGCGAGGAA
GGCTATCGCA TCGTCCTCGT CAACTCGAAC CCCGCCACGA TCATGACCGA TCCGGAGATG
GCGGACGCGA CCTATGTCGA GCCGATCACG CCCGAGATCG TCGCCCGGAT CATCGAGAAG
GAGCGGCCCG ACGCCGTCCT GCCGACGATG GGCGGGCAGA CCGCGCTCAA CACCGCGCTG
GCGCTGTTCA ACGACGGTAC GCTGGAGAAA TATGGCTGCC AGATGATCGG CGCCGACGCC
GAGGCGATCG ACAAGGCCGA GGACCGGCTG AAGTTCCGCC AGGCGATGGA CAAGATCGGC
CTGGAAAGCC CGCGCTCGGA CGTCGCCCAC ACGCTCGACG AGGCGCTGCG CGTGCTCGAC
TATGTCGGCC TGCCGGCGAT CATCCGCCCC AGCTTCACCA TGGGCGGCAC CGGCGGCGGC
ATCGCCTACA ACAAGGACGA GTTCGTCAAG ATCGTCACCG GCGGTCTCGA CGCGTCGCCG
ACCACCGAGG TGCTGATCGA GGAATCGGTG CTCGGCTGGA AGGAATATGA GATGGAGGTC
GTGCGCGATC GCGCCGACAA CTGCATCATC ATCTGCTCGA TCGAGAATGT CGATCCGATG
GGCGTCCACA CGGGCGATTC CATCACCGTC GCGCCGGCGC TGACGCTGAC CGACAAGGAA
TATCAGATCA TGCGCAACGC CTCGATCGCG GTGCTGCGCG AGATCGGCGT CGAGACCGGC
GGGTCGAACG TCCAGTTCGC GGTCAACCCG GCTGACGGCC GCCTGGTCGT GATCGAGATG
AACCCCCGCG TGTCGCGCTC CTCGGCGCTG GCGTCGAAGG CGACCGGCTT CCCGATCGCC
AAGGTCGCCG CCAAGCTGGC GGTCGGCTAC ACGCTCGACG AGATCATGAA CGACATCACC
GGCGCAACGC CGGCCTCGTT CGAGCCGACG ATCGACTATG TCGTCACCAA GATACCGCGC
TTCGCCTTCG AGAAGTTCAA GGGCGCCGAG CCGCTGCTGT CGACCGCGAT GAAGTCGGTC
GGCGAGACGA TGGCGATCGG CCGCAACATC CATGAATCGA TGCAGAAGGC GCTGCGCGGC
CTGGAGACCG GCCTCGCCGG CTTCAACGTG GTCGAGAACC TGAAGGGCGC GGCCCGCTCG
GTGATCGAGG AGGAACTGGC GCGGCCGACG CCGGACCGGC TGCTCGTCGC GGCGCAGGCG
CTGCGCGAGG GCTTCTCGGT CGACGACATC CACCGCATCG CCAAGTACGA ACCCTGGTTC
CTCGATCGGC TCGCCGAGAT CGTCGCGGCC GAGGAGGAAG TGTGCCGCGA AGGGCTGCCG
CAGGACGCGG CCGGCATGCG CCGGCTCAAG GCGATGGGCT TCTCCGACAA GCGGCTCGCC
TGGCTGGCGC TGCAATCGGC CAACCTGGCG GGCATGGCGC GCGAACAGGC GCGCGGCTCG
GGCATCGTCC ATGACGCGGC CAAGGCGATG ACCGGCGGCA TCACCGAGAA GGAGGTGCGC
GCGCACCGCC ACAAGCTGGG CGTCCGCCCG GTGTTCAAGC GGATCGACAC CTGCGCGGCC
GAGTTCGAGG CGAAGACGCC CTACATGTAC TCGACCTACG AGGCGCCGAG CTTCGGCGAG
CCCGAGTGCG AGAGCAACCC GAGCGACCGC GAGAAGATCG TCATCCTCGG CGGCGGCCCG
AACCGGATCG GGCAGGGGAT CGAGTTCGAT TATTGCTGCT GCCACGCCTG CTTCGCGCTG
GCCGACGCCG GCTATGAGAC GATCATGGTC AACTGCAACC CGGAGACGGT GTCGACCGAC
TATGACACGT CGGATCGCCT CTATTTCGAG CCGCTGACCG CCGAGGACGT GCTGGAGATC
CTGCATGTCG AACAGTCGAA GGGCACGCTC AAGGGCGTGA TCGTCCAGTT CGGCGGGCAG
ACCCCGCTCA AGCTGGCGCA GGAACTGGAG GATGCGGGCA TCCCGATCCT CGGCACCAGC
CCCGACGCGA TCGACCTGGC CGAGGACCGC GAGCGCTTCG CCGCGCTGGT CGGCGAGCTC
GGCCTCAGCC AGCCGCGCAA CGGCATCGCC CGCAGCCGCG AGGAGGCGCT GGCCGTCGCC
GAGCGGGTCG GCTATCCGGT GCTGATGCGG CCCTCCTACG TGCTCGGCGG CCGCGCGATG
GAGATCGTCG AGGATCCGTC ACAGCTCGAT CAGTATATCA GCACTGCGGT GCAAGTATCT
GGCGATTCAC CAGTTTTGAT CGACCAGTAT CTGCGCGACG CGATCGAGGT CGACGTCGAC
GCGATCTGCG ACGGCGACGA TGTCGTGGTC GCGGGCGTGC TCCAGCATAT CGAGGAAGCG
GGGGTCCATT CGGGCGACAG CGCCTGCACC CTGCCGCCCT ACAGCCTGCC GAAGGAGATC
ATCGCCGAGA TCGAGCGGCA GACCGACGCG CTGGCCCGCG CGCTCAAGGT GCGCGGCCTG
ATGAACGTCC AATATGCGGT CAAGGACGGC GAGGTCTACC TGATCGAGGT CAACCCGCGC
GCCAGCCGCA CCGTGCCGTT CGTCGCCAAG GCGATCGGCC AGCCGATCGC CAAGATCGCG
GCGCGGGTGA TGGCGGGCGA GCGCCTCAAG GCGCTGCCGC GCATCCGGCT CGACGTCGAC
TATATCGCCG TCAAGGAAGC CGTCTTCCCG TTCGCGCGCT TCCCCGGGGT CGATCCGGTG
TTAAGCCCGG AAATGAAATC TACCGGCGAA GTCATGGGAA TCGATAGTGA TTTTGCCACG
GCCTTCGCCA AGGCGCAGCT CGGCGCGGGA ACCAGGCTGC CGCTCGGCGG CACCGCCTTC
GTCTCGGTCA AGGACAGCGA CAAGGGGCAT ATCCTGCCGG CCGTGCGGCA ACTCATCGCG
ATGGACTTCA CCATTCTCGC GACCAGCGGC ACCGCGACCT TCCTGCGCGA GCAGGGGCTG
GAGGTGGAGA CCGTGCTCAA GAAGCGCGAG GGGCGGCCGA ACATCGTCGA CCGGATCGTC
GACGGCGACG TCGACCTGAT CTTCAACACG ACCGAAGGCT GGCAGTCGCT GCTGGATTCG
AAGGCGATCC GGACGTCGGC GCTCTACGGC CGCGTTCCCT ACTTCACCAC GGCGGCGGCC
AGCGTCGCCG CGGCGCAGGC GATCGGGGCG TTGCGGGAGC GGAAGCTTGA AGTGCGCGCG
CTTCAATCCT ATTATTCTCA TTCGCACGCC TGA
|
|---|
| Protein sequence | MPKRTDISSI LIIGAGPIVI GQACEFDYSG TQACKALREE GYRIVLVNSN PATIMTDPEM
ADATYVEPIT PEIVARIIEK ERPDAVLPTM GGQTALNTAL ALFNDGTLEK YGCQMIGADA
EAIDKAEDRL KFRQAMDKIG LESPRSDVAH TLDEALRVLD YVGLPAIIRP SFTMGGTGGG
IAYNKDEFVK IVTGGLDASP TTEVLIEESV LGWKEYEMEV VRDRADNCII ICSIENVDPM
GVHTGDSITV APALTLTDKE YQIMRNASIA VLREIGVETG GSNVQFAVNP ADGRLVVIEM
NPRVSRSSAL ASKATGFPIA KVAAKLAVGY TLDEIMNDIT GATPASFEPT IDYVVTKIPR
FAFEKFKGAE PLLSTAMKSV GETMAIGRNI HESMQKALRG LETGLAGFNV VENLKGAARS
VIEEELARPT PDRLLVAAQA LREGFSVDDI HRIAKYEPWF LDRLAEIVAA EEEVCREGLP
QDAAGMRRLK AMGFSDKRLA WLALQSANLA GMAREQARGS GIVHDAAKAM TGGITEKEVR
AHRHKLGVRP VFKRIDTCAA EFEAKTPYMY STYEAPSFGE PECESNPSDR EKIVILGGGP
NRIGQGIEFD YCCCHACFAL ADAGYETIMV NCNPETVSTD YDTSDRLYFE PLTAEDVLEI
LHVEQSKGTL KGVIVQFGGQ TPLKLAQELE DAGIPILGTS PDAIDLAEDR ERFAALVGEL
GLSQPRNGIA RSREEALAVA ERVGYPVLMR PSYVLGGRAM EIVEDPSQLD QYISTAVQVS
GDSPVLIDQY LRDAIEVDVD AICDGDDVVV AGVLQHIEEA GVHSGDSACT LPPYSLPKEI
IAEIERQTDA LARALKVRGL MNVQYAVKDG EVYLIEVNPR ASRTVPFVAK AIGQPIAKIA
ARVMAGERLK ALPRIRLDVD YIAVKEAVFP FARFPGVDPV LSPEMKSTGE VMGIDSDFAT
AFAKAQLGAG TRLPLGGTAF VSVKDSDKGH ILPAVRQLIA MDFTILATSG TATFLREQGL
EVETVLKKRE GRPNIVDRIV DGDVDLIFNT TEGWQSLLDS KAIRTSALYG RVPYFTTAAA
SVAAAQAIGA LRERKLEVRA LQSYYSHSHA
|
|---|
| |